View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_533 (Length: 238)
Name: NF10145A_low_533
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_533 |
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Alignment Details
Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 20 - 199
Target Start/End: Original strand, 1629779 - 1629958
Alignment:
| Q |
20 |
atgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgatatggcacaccgatagaaaactgagagatcggaggctg |
119 |
Q |
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| T |
1629779 |
atgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgatatggcacaccgatagaaaactgagagatcggacgctg |
1629878 |
T |
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| Q |
120 |
atcttagcgccacagcttgacccttgtgtggaccggcggtgttttggggggttatgtttcgtgcaatgaagggatgtcca |
199 |
Q |
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| T |
1629879 |
atcttagcgccacagcttgacccttgtgtggaccggcggtattttggaaggttatgtctcgtgcaatgaagtgaagtcca |
1629958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 20 - 199
Target Start/End: Original strand, 1606481 - 1606660
Alignment:
| Q |
20 |
atgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgatatggcacaccgatagaaaactgagagatcggaggctg |
119 |
Q |
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| T |
1606481 |
atgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgatatggcacaccgatagaaaactgagagatcggaggctg |
1606580 |
T |
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| Q |
120 |
atcttagcgccacagcttgacccttgtgtggaccggcggtgttttggggggttatgtttcgtgcaatgaagggatgtcca |
199 |
Q |
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| T |
1606581 |
atcttagcgccactgcttgacccttgtgtggaccggcggtattttggaaggttatgtcacgtgcaatgaagtgaagtcca |
1606660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 20 - 199
Target Start/End: Complemental strand, 10820919 - 10820740
Alignment:
| Q |
20 |
atgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgatatggcacaccgatagaaaactgagagatcggaggctg |
119 |
Q |
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| T |
10820919 |
atgaagcattgtctgtaaaattgacgttgtgcatgagccatgagggtgtcttggtaacccgatattgtacaccggtagaagacggagagatcagaggctg |
10820820 |
T |
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| Q |
120 |
atcttagcgccacagcttgacccttgtgtggaccggcggtgttttggggggttatgtttcgtgcaatgaagggatgtcca |
199 |
Q |
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||| |||||||| |||||||||||||||||||||||||| |||||| |||||||| |||||||||||| || ||||| |
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| T |
10820819 |
atcggagcgccactgcttgacccttgtgtggaccggcggtattttggaaggttatgtcacgtgcaatgaagtgaagtcca |
10820740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 20 - 189
Target Start/End: Original strand, 1623603 - 1623772
Alignment:
| Q |
20 |
atgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgatatggcacaccgatagaaaactgagagatcggaggctg |
119 |
Q |
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|||||||||||||| || |||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| || |||||||||||||||| |
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| T |
1623603 |
atgaagcattgtcggtagaattgacgttgtgcatgagccatcagagtgtcttgatagcccgatatagcacaccgatagaagacagagagatcggaggctg |
1623702 |
T |
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| Q |
120 |
atcttagcgccacagcttgacccttgtgtggaccggcggtgttttggggggttatgtttcgtgcaatgaa |
189 |
Q |
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||| |||||||||||||| || ||||| ||||| || || ||||| ||| |||| ||||||||||| |
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| T |
1623703 |
atcggagcgccacagcttggcctttgtgaggaccagcagtattttgaaaggtaatgtcacgtgcaatgaa |
1623772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 189
Target Start/End: Original strand, 18781297 - 18781466
Alignment:
| Q |
20 |
atgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgatatggcacaccgatagaaaactgagagatcggaggctg |
119 |
Q |
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||||||||||||| |||||||||||||| ||||| ||||| || |||||||| || || ||||| |||||||||||||| || |||||||||||||||| |
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| T |
18781297 |
atgaagcattgtctgtaaaattgacgttgcgcatgggccataagggtgtcttggtagcccgatatagcacaccgatagaagacagagagatcggaggctg |
18781396 |
T |
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| Q |
120 |
atcttagcgccacagcttgacccttgtgtggaccggcggtgttttggggggttatgtttcgtgcaatgaa |
189 |
Q |
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||| ||||||||||||||||| || || ||||| || || |||||| |||||||| || |||||||| |
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| T |
18781397 |
atcggagcgccacagcttgacctttatgaggaccagcagtattttggaaggttatgtcgcgggcaatgaa |
18781466 |
T |
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