View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_537 (Length: 237)
Name: NF10145A_low_537
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_537 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 8 - 237
Target Start/End: Original strand, 5034409 - 5034638
Alignment:
| Q |
8 |
ataccaattttaaattaggagctattttcaattattgtgaagcatcacnnnnnnnnnncttccaaactttaagataagttctattaggcgataagcaaat |
107 |
Q |
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| T |
5034409 |
ataccaattttaaattaggagctattttcaattattgtgaagcatcacttttttttt-cttccaaaccttaagataagttctattaggcgataagcaaat |
5034507 |
T |
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| Q |
108 |
aatatgactcatttgttagcaagggcttcattgtcatatggtagttaccattgtcatggtcccatgtcat-ttgcatttaacatgttgttataactgaaa |
206 |
Q |
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| T |
5034508 |
aatatgactcatttgttagcaagggcttcattgtcatatgatagttaccattgtcatgatcacatgtcatcttgcatttagcatgatgttataactgaaa |
5034607 |
T |
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| Q |
207 |
tgagttaatttggttcttgtcaacaagacat |
237 |
Q |
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| T |
5034608 |
tgagttaatttggttcttgtcaaaaagacat |
5034638 |
T |
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Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 69 - 147
Target Start/End: Original strand, 36359619 - 36359697
Alignment:
| Q |
69 |
ccaaactttaagataagttctattaggcgataagcaaataatatgactcatttgttagcaagggcttcattgtcatatg |
147 |
Q |
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| T |
36359619 |
ccaaactttaagataagttttatcagacgacaagcaaacaatgtggctaatttgttagcaagggcttcattgtcatatg |
36359697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 43000528 - 43000475
Alignment:
| Q |
71 |
aaactttaagataagttctattaggcgataagcaaataatatgactcatttgtt |
124 |
Q |
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| T |
43000528 |
aaactttaatataagttttattaggagacaagcaaacaatattactcatttgtt |
43000475 |
T |
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