View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_546 (Length: 235)
Name: NF10145A_low_546
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_546 |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 217
Target Start/End: Original strand, 31306341 - 31306542
Alignment:
| Q |
16 |
agcacagaaatattctcttgaacacaagggggaaagcaacctctttgaccatttatttgagcttttaaactcttccggtgacaatgatgaaagtttccga |
115 |
Q |
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| T |
31306341 |
agcacagacatattctcttgaacacaagggggaaagcaacctctttgaccatttatttgagcttttaaactcttccggtgacaatgatgaaagtttccga |
31306440 |
T |
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| Q |
116 |
agggagttagcatcctgcacaggagctctgcagacatctgttagccaacacatggctaaggagcagcagcaagtaagtttattcaatatatctttccttg |
215 |
Q |
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| T |
31306441 |
agggagttagcatcctgcacaggagctctgcagacatctgttagccaacacatggctaaggagcagcagcaagtaagtttattcaatatatctttccttg |
31306540 |
T |
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| Q |
216 |
at |
217 |
Q |
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|| |
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| T |
31306541 |
at |
31306542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 26 - 177
Target Start/End: Original strand, 43982639 - 43982790
Alignment:
| Q |
26 |
tattctcttgaacacaagggggaaagcaacctctttgaccatttatttgagcttttaaactcttccggtgacaatgatgaaagtttccgaagggagttag |
125 |
Q |
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| T |
43982639 |
tattctcttgagcacaagggtgaaagcaatctttttgatcatctatttgagctcttaaattcttccaccaagaatgatgagggttttccaagagaattgg |
43982738 |
T |
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| Q |
126 |
catcctgcacaggagctctgcagacatctgttagccaacacatggctaagga |
177 |
Q |
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| T |
43982739 |
catcttgcacaggagctttacagacatcagttagtcaacacctggcaaagga |
43982790 |
T |
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