View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_547 (Length: 235)

Name: NF10145A_low_547
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_547
NF10145A_low_547
[»] scaffold0503 (1 HSPs)
scaffold0503 (15-222)||(11775-11983)
[»] chr3 (25 HSPs)
chr3 (15-222)||(53070798-53071006)
chr3 (121-222)||(49390052-49390153)
chr3 (73-204)||(45796785-45796916)
chr3 (124-222)||(18440232-18440331)
chr3 (124-222)||(19485306-19485405)
chr3 (122-219)||(20630472-20630570)
chr3 (82-204)||(23413630-23413752)
chr3 (73-219)||(1465747-1465891)
chr3 (122-204)||(14497131-14497213)
chr3 (167-219)||(11886855-11886908)
chr3 (167-219)||(5206700-5206753)
chr3 (167-219)||(13026710-13026763)
chr3 (167-219)||(14507806-14507859)
chr3 (167-219)||(15932551-15932604)
chr3 (167-219)||(17520067-17520120)
chr3 (167-219)||(17534864-17534917)
chr3 (167-219)||(17538032-17538085)
chr3 (167-219)||(17548612-17548665)
chr3 (167-219)||(30175611-30175664)
chr3 (167-219)||(40806898-40806951)
chr3 (167-219)||(40811713-40811766)
chr3 (167-219)||(41173416-41173469)
chr3 (167-219)||(43890081-43890134)
chr3 (168-219)||(13031823-13031875)
chr3 (15-47)||(22110453-22110485)
[»] chr4 (12 HSPs)
chr4 (23-222)||(6190274-6190474)
chr4 (15-180)||(21815730-21815895)
chr4 (101-222)||(21815865-21815987)
chr4 (73-204)||(3514829-3514960)
chr4 (73-204)||(15869083-15869214)
chr4 (73-204)||(32850999-32851130)
chr4 (113-219)||(15098989-15099096)
chr4 (113-219)||(19857222-19857329)
chr4 (73-219)||(13844243-13844387)
chr4 (113-219)||(361895-362002)
chr4 (167-219)||(35812534-35812587)
chr4 (167-219)||(10357578-10357631)
[»] scaffold0034 (1 HSPs)
scaffold0034 (15-222)||(51984-52192)
[»] chr2 (9 HSPs)
chr2 (23-222)||(32452038-32452238)
chr2 (15-92)||(22413239-22413315)
chr2 (167-219)||(6478347-6478400)
chr2 (167-219)||(9974827-9974880)
chr2 (167-219)||(19202301-19202354)
chr2 (15-92)||(20520294-20520370)
chr2 (167-219)||(24435955-24436008)
chr2 (167-219)||(24782002-24782055)
chr2 (167-218)||(5032461-5032513)
[»] chr8 (10 HSPs)
chr8 (15-220)||(19801526-19801731)
chr8 (122-222)||(39833623-39833723)
chr8 (113-219)||(38550365-38550472)
chr8 (73-204)||(20982962-20983090)
chr8 (113-219)||(27472662-27472769)
chr8 (124-219)||(13428427-13428523)
chr8 (122-219)||(1323458-1323558)
chr8 (167-222)||(19801719-19801775)
chr8 (167-219)||(19127893-19127946)
chr8 (167-219)||(39937107-39937160)
[»] chr6 (11 HSPs)
chr6 (15-222)||(18456517-18456736)
chr6 (15-222)||(18461677-18461896)
chr6 (15-180)||(18821945-18822111)
chr6 (117-222)||(18822097-18822203)
chr6 (73-219)||(25956958-25957102)
chr6 (135-204)||(18319551-18319620)
chr6 (113-204)||(27850833-27850924)
chr6 (167-219)||(31733650-31733703)
chr6 (167-222)||(23017252-23017308)
chr6 (167-219)||(17742991-17743044)
chr6 (167-219)||(18708361-18708413)
[»] scaffold0056 (1 HSPs)
scaffold0056 (15-222)||(79429-79637)
[»] chr7 (17 HSPs)
chr7 (15-177)||(12756816-12756978)
chr7 (73-219)||(37727874-37728018)
chr7 (73-219)||(17232269-17232413)
chr7 (113-219)||(9390070-9390177)
chr7 (73-222)||(6170439-6170586)
chr7 (113-217)||(45847997-45848102)
chr7 (140-219)||(14270435-14270515)
chr7 (141-204)||(1543467-1543530)
chr7 (167-219)||(18075582-18075634)
chr7 (162-219)||(8468133-8468191)
chr7 (15-92)||(15008600-15008677)
chr7 (167-219)||(8852262-8852315)
chr7 (167-219)||(13150633-13150686)
chr7 (167-219)||(32434728-32434781)
chr7 (167-219)||(38227286-38227339)
chr7 (168-219)||(11066328-11066380)
chr7 (167-218)||(32300904-32300956)
[»] scaffold0031 (2 HSPs)
scaffold0031 (15-180)||(20523-20688)
scaffold0031 (117-222)||(20674-20780)
[»] scaffold0716 (1 HSPs)
scaffold0716 (73-204)||(4516-4647)
[»] scaffold0235 (2 HSPs)
scaffold0235 (73-204)||(13180-13311)
scaffold0235 (73-204)||(24882-25012)
[»] scaffold0098 (1 HSPs)
scaffold0098 (73-204)||(34767-34898)
[»] scaffold0075 (1 HSPs)
scaffold0075 (73-204)||(8669-8800)
[»] scaffold0192 (1 HSPs)
scaffold0192 (102-204)||(9701-9803)
[»] chr1 (14 HSPs)
chr1 (113-222)||(28194823-28194933)
chr1 (73-219)||(43542758-43542902)
chr1 (73-219)||(41305924-41306068)
chr1 (113-222)||(20636542-20636652)
chr1 (73-219)||(35982016-35982160)
chr1 (124-219)||(46382940-46383036)
chr1 (124-218)||(43697015-43697110)
chr1 (167-219)||(41227790-41227843)
chr1 (167-219)||(48300765-48300818)
chr1 (167-219)||(431541-431594)
chr1 (15-92)||(16368387-16368463)
chr1 (16-92)||(26064881-26064957)
chr1 (15-92)||(50686555-50686631)
chr1 (15-47)||(41050137-41050169)
[»] chr5 (4 HSPs)
chr5 (73-222)||(5889496-5889643)
chr5 (68-222)||(21741873-21742025)
chr5 (167-219)||(19920617-19920670)
chr5 (159-222)||(29915436-29915500)
[»] scaffold0116 (1 HSPs)
scaffold0116 (73-219)||(44121-44265)
[»] scaffold0029 (1 HSPs)
scaffold0029 (73-204)||(74469-74600)
[»] scaffold0810 (1 HSPs)
scaffold0810 (113-219)||(2685-2792)
[»] scaffold0045 (1 HSPs)
scaffold0045 (113-204)||(47049-47140)
[»] scaffold1792 (1 HSPs)
scaffold1792 (122-204)||(52-134)
[»] scaffold0230 (2 HSPs)
scaffold0230 (122-204)||(23766-23848)
scaffold0230 (73-204)||(20790-20918)
[»] scaffold0035 (1 HSPs)
scaffold0035 (118-219)||(106205-106307)
[»] scaffold0117 (1 HSPs)
scaffold0117 (167-219)||(41286-41339)
[»] scaffold0064 (1 HSPs)
scaffold0064 (167-219)||(57702-57755)
[»] scaffold0047 (1 HSPs)
scaffold0047 (167-219)||(77988-78041)
[»] scaffold0036 (1 HSPs)
scaffold0036 (167-219)||(78449-78502)
[»] scaffold0737 (2 HSPs)
scaffold0737 (15-47)||(1899-1931)
scaffold0737 (168-219)||(6786-6838)
[»] scaffold0010 (1 HSPs)
scaffold0010 (15-79)||(60817-60880)


Alignment Details
Target: scaffold0503 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: scaffold0503
Description:

Target: scaffold0503; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 15 - 222
Target Start/End: Complemental strand, 11983 - 11775
Alignment:
Q  15 agatgaaggatgatgttccaatttattggatttgtattaagaagttaatgttctaaaatgttaagaagttgagtccattgcatatgcataatacgaggtg 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  11983 agatgaaggatgatgttccaatttattggatttgtattaagaagtcgatgttctaaaatgttaagaagttgagtccattgcatatgcataatacgagatg 11884  T
Q  115 ggagagagcttgatgctttgtaatgtatatttatacataatacgcgatgggagagggattgatgctatgagagcctatttacgctcaatacg-tgggggc 213  Q
    |||||||||||||| || |||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||| |||||||    
T  11883 ggagagagcttgattctctgtaatgtatatttatacataatacgcgatggtagagggcttgatgctctgagagcctatttacgctcaatacgatgggggc 11784  T
Q  214 ttgatgtcc 222  Q
    |||||||||    
T  11783 ttgatgtcc 11775  T

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Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 53070798 - 53071006
Alignment:
Q  15 agatgaaggatgatgttccaatttattggatttgtattaagaagttaatgttctaaaatgttaagaagttgagtccattgcatatgcataatacgaggtg 114  Q
    ||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  53070798 agatgaaggatgatgtttcaatttattggatttgtattaagaagtcgatgttctaaaatgttaagaagttgagtccattgcatacgcataatacgagatg 53070897  T
Q  115 ggagagagcttgatgctttgtaatgtatatttatacataatacgcgatgggagagggattgatgctatgagagcctatttacgctcaatacg-tgggggc 213  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| || ||||    
T  53070898 ggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggcttgatgctgtgagagcctatttacgctcaatacgatgagggc 53070997  T
Q  214 ttgatgtcc 222  Q
    |||||||||    
T  53070998 ttgatgtcc 53071006  T

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Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 121 - 222
Target Start/End: Original strand, 49390052 - 49390153
Alignment:
Q  121 agcttgatgctttgtaatgtatatttatacataatacgcgatgggagagggattgatgctatgagagcctatttacgctcaatacgtgggggcttgatgt 220  Q
    ||||||||||| |||||||||||||||||||||||| | || || |||||| |||||||| |||||||||||||||||||||||||| ||||||||||||    
T  49390052 agcttgatgctctgtaatgtatatttatacataatatgtgaaggtagagggcttgatgctctgagagcctatttacgctcaatacgttggggcttgatgt 49390151  T
Q  221 cc 222  Q
    ||    
T  49390152 cc 49390153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 73 - 204
Target Start/End: Complemental strand, 45796916 - 45796785
Alignment:
Q  73 tgttaagaagttgagtccattgcatatgcataatacgaggtgggagagagcttgatgctttgtaatgtatatttatacataatacgcgatgggagaggga 172  Q
    ||||| || ||| |||||||||||||| ||||||  ||| |||| ||| |||||||||| ||||||||||||||||||| |||  | ||||||||||||     
T  45796916 tgttaggatgttaagtccattgcatattcataatctgagatgggggagggcttgatgctctgtaatgtatatttatacacaatctgagatgggagagggc 45796817  T
Q  173 ttgatgctatgagagcctatttacgctcaata 204  Q
    |||||||| || ||||||||||||||||||||    
T  45796816 ttgatgctctgggagcctatttacgctcaata 45796785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 124 - 222
Target Start/End: Original strand, 18440232 - 18440331
Alignment:
Q  124 ttgatgctttgtaatgtatatttatacataatacgcgatgggagagggattgatgctatgagagcctatttacgctcaatacg-tgggggcttgatgtcc 222  Q
    |||||||| |||||||||||||||||||||||  | || ||||||||| |||||||| || |||||||||||||||||||||| ||||||||||||||||    
T  18440232 ttgatgctctgtaatgtatatttatacataatttgtgaagggagagggcttgatgctctgtgagcctatttacgctcaatacgttgggggcttgatgtcc 18440331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 124 - 222
Target Start/End: Original strand, 19485306 - 19485405
Alignment:
Q  124 ttgatgctttgtaatgtatatttatacataatacgcgatgggagagggattgatgctatgagagcctatttacgctcaatacg-tgggggcttgatgtcc 222  Q
    |||||||| |||||||||||||||||||||||  | || ||||||||| |||||||| || |||||||||||||||||||||| ||||||||||||||||    
T  19485306 ttgatgctctgtaatgtatatttatacataatttgtgaagggagagggcttgatgctctgtgagcctatttacgctcaatacgttgggggcttgatgtcc 19485405  T

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Target: chr3; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 122 - 219
Target Start/End: Original strand, 20630472 - 20630570
Alignment:
Q  122 gcttgatgctttgtaatgtatatttatacataatacgcgatgggagagggattgatgctatgagagcctatttacgctcaatacg-tgggggcttgatg 219  Q
    |||||||||| |||||||||||||||||||||||| | || ||||||||| |||||||| || |||||||||||||||||||| | |||||||||||||    
T  20630472 gcttgatgctctgtaatgtatatttatacataatatgtgaagggagagggcttgatgctctgtgagcctatttacgctcaatatgttgggggcttgatg 20630570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 82 - 204
Target Start/End: Original strand, 23413630 - 23413752
Alignment:
Q  82 gttgagtccattgcatatgcataatacgaggtgggagagagcttgatgctttgtaatgtatatttatacataatacgcgatgggagagggattgatgcta 181  Q
    |||||||||||||||||| ||||||  ||| |||| ||| |||||||||| | ||||||||||||||||| |||  | |||||||||||| ||||||||     
T  23413630 gttgagtccattgcatattcataatctgagatgggggagggcttgatgctctataatgtatatttatacacaatctgagatgggagagggcttgatgctc 23413729  T
Q  182 tgagagcctatttacgctcaata 204  Q
    |  ||||||||||||||||||||    
T  23413730 taggagcctatttacgctcaata 23413752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 73 - 219
Target Start/End: Original strand, 1465747 - 1465891
Alignment:
Q  73 tgttaagaagttgagtccattgcatatgcataatacgaggtgggagagagcttgatgctttgtaatgtatatttatacataatacgcgatgggagaggga 172  Q
    |||||||| |||||||||||||||||  |||  ||||   |||| ||| |||||||||| ||||||||||||||| |||||||| | || ||||||| ||    
T  1465747 tgttaagatgttgagtccattgcatactcatt-tacgt--tgggtgagggcttgatgctctgtaatgtatatttaaacataatatgtgaagggagagaga 1465843  T
Q  173 ttgatgctatgagagcctatttacgctcaatacg-tgggggcttgatg 219  Q
    |||||||| || ||||||||||| |||||||| | |||||||||||||    
T  1465844 ttgatgctctgtgagcctatttaagctcaataagttgggggcttgatg 1465891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 122 - 204
Target Start/End: Complemental strand, 14497213 - 14497131
Alignment:
Q  122 gcttgatgctttgtaatgtatatttatacataatacgcgatgggagagggattgatgctatgagagcctatttacgctcaata 204  Q
    ||||||| || ||||||||||||||||||| |||  | ||| |||||||| |||||||| || ||||||||||||||||||||    
T  14497213 gcttgatactctgtaatgtatatttatacacaatctgagataggagagggcttgatgctctgggagcctatttacgctcaata 14497131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 11886855 - 11886908
Alignment:
Q  167 gagggattgatgctatgagagcctatttacgctcaatacg-tgggggcttgatg 219  Q
    ||||| ||||||||||| |||||||||||||||||||| | |||||||||||||    
T  11886855 gagggcttgatgctatgtgagcctatttacgctcaatatgttgggggcttgatg 11886908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 5206700 - 5206753
Alignment:
Q  167 gagggattgatgctatgagagcctatttacgctcaatacg-tgggggcttgatg 219  Q
    ||||| |||||||  || |||||||||||||||||||||| |||||||||||||    
T  5206700 gagggtttgatgccctgtgagcctatttacgctcaatacgatgggggcttgatg 5206753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 13026710 - 13026763
Alignment:
Q  167 gagggattgatgctatgagagcctatttacgctcaatacg-tgggggcttgatg 219  Q
    ||||| |||||||  || |||||||||||||||||||||| |||||||||||||    
T  13026710 gagggcttgatgccttgtgagcctatttacgctcaatacgttgggggcttgatg 13026763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 14507859 - 14507806
Alignment:
Q  167 gagggattgatgctatgagagcctatttacgctcaatacg-tgggggcttgatg 219  Q
    ||||| |||||||  || |||||||||||||||||||||| |||||||||||||    
T  14507859 gagggcttgatgccctgtgagcctatttacgctcaatacgttgggggcttgatg 14507806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 15932551 - 15932604
Alignment:
Q  167 gagggattgatgctatgagagcctatttacgctcaatacg-tgggggcttgatg 219  Q
    ||||| |||||||  || |||||||||||||||||||||| |||||||||||||    
T  15932551 gagggcttgatgccctgtgagcctatttacgctcaatacgttgggggcttgatg 15932604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 17520067 - 17520120
Alignment:
Q  167 gagggattgatgctatgagagcctatttacgctcaatacg-tgggggcttgatg 219  Q
    ||||| |||||||  || |||||||||||||||||||||| |||||||||||||    
T  17520067 gagggtttgatgccctgtgagcctatttacgctcaatacgttgggggcttgatg 17520120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 17534864 - 17534917
Alignment:
Q  167 gagggattgatgctatgagagcctatttacgctcaatacg-tgggggcttgatg 219  Q
    ||||| |||||||  || |||||||||||||||||||||| |||||||||||||    
T  17534864 gagggtttgatgccctgtgagcctatttacgctcaatacgttgggggcttgatg 17534917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 17538085 - 17538032
Alignment:
Q  167 gagggattgatgctatgagagcctatttacgctcaatacg-tgggggcttgatg 219  Q
    ||||| |||||||  || |||||||||||||||||||||| |||||||||||||    
T  17538085 gagggcttgatgccctgtgagcctatttacgctcaatacgttgggggcttgatg 17538032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 17548612 - 17548665
Alignment:
Q  167 gagggattgatgctatgagagcctatttacgctcaatacg-tgggggcttgatg 219  Q
    ||||| |||||||  || |||||||||||||||||||||| |||||||||||||    
T  17548612 gagggcttgatgccctgtgagcctatttacgctcaatacgttgggggcttgatg 17548665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 30175611 - 30175664
Alignment:
Q  167 gagggattgatgctatgagagcctatttacgctcaatacg-tgggggcttgatg 219  Q
    ||||| |||||||  || |||||||||||||||||||||| |||||||||||||    
T  30175611 gagggtttgatgccctgtgagcctatttacgctcaatacgttgggggcttgatg 30175664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 40806951 - 40806898
Alignment:
Q  167 gagggattgatgctatgagagcctatttacgctcaatacg-tgggggcttgatg 219  Q
    ||||| |||||||  || |||||||||||||||||||||| |||||||||||||    
T  40806951 gagggcttgatgccctgtgagcctatttacgctcaatacgttgggggcttgatg 40806898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 40811766 - 40811713
Alignment:
Q  167 gagggattgatgctatgagagcctatttacgctcaatacg-tgggggcttgatg 219  Q
    ||||| |||||||  || |||||||||||||||||||||| |||||||||||||    
T  40811766 gagggtttgatgccctgtgagcctatttacgctcaatacgttgggggcttgatg 40811713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 41173416 - 41173469
Alignment:
Q  167 gagggattgatgctatgagagcctatttacgctcaatacg-tgggggcttgatg 219  Q
    ||||| |||||||  || |||||||||||||||||||||| |||||||||||||    
T  41173416 gagggcttgatgccctgtgagcctatttacgctcaatacgttgggggcttgatg 41173469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 43890081 - 43890134
Alignment:
Q  167 gagggattgatgctatgagagcctatttacgctcaatacg-tgggggcttgatg 219  Q
    ||||| |||||||  || |||||||||||||||||||||| |||||||||||||    
T  43890081 gagggcttgatgccctgggagcctatttacgctcaatacgttgggggcttgatg 43890134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 219
Target Start/End: Original strand, 13031823 - 13031875
Alignment:
Q  168 agggattgatgctatgagagcctatttacgctcaatacg-tgggggcttgatg 219  Q
    |||| |||||||  || |||||||||||||||||||||| |||||||||||||    
T  13031823 agggcttgatgccctgtgagcctatttacgctcaatacgttgggggcttgatg 13031875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 22110453 - 22110485
Alignment:
Q  15 agatgaaggatgatgttccaatttattggattt 47  Q
    ||||||||||||||||||||| |||||||||||    
T  22110453 agatgaaggatgatgttccaaattattggattt 22110485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 149; Significance: 8e-79; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 23 - 222
Target Start/End: Complemental strand, 6190474 - 6190274
Alignment:
Q  23 gatgatgttccaatttattggatttgtattaagaagttaatgttctaaaatgttaagaagttgagtccattgcatatgcataatacgaggtgggagagag 122  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||| |||||||||||| ||| ||||||    
T  6190474 gatgatgttccaatttattggatttgtattaagaagtcgatgttctaaaatgttaaggagttgagtccattgcatacgcataatacgagatggtagagag 6190375  T
Q  123 cttgatgctttgtaatgtatatttatacataatacgcgatgggagagggattgatgctatgagagcctatttacgctcaatacg-tgggggcttgatgtc 221  Q
    ||||||||| ||||||||||||||||||||||||| |||||| |||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  6190374 cttgatgctctgtaatgtatatttatacataatacacgatggtagagggcttgatgctctgagagcctatttacgctcaatacgatgggggcttgatgtc 6190275  T
Q  222 c 222  Q
    |    
T  6190274 c 6190274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 15 - 180
Target Start/End: Original strand, 21815730 - 21815895
Alignment:
Q  15 agatgaaggatgatgttccaatttattggatttgtattaagaagttaatgttctaaaatgttaagaagttgagtccattgcatatgcataatacgaggtg 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| |||| |||||||||||| ||    
T  21815730 agatgaaggatgatgttccaatttattggatttgtattaagaagtcgatgttctaaaatgttaagaagttgagtccattacatacgcataatacgagatg 21815829  T
Q  115 ggagagagcttgatgctttgtaatgtatatttatacataatacgcgatgggagagggattgatgct 180  Q
    ||||||||||||||||| |||||||||||||||||||||| ||| |||||||||| | ||||||||    
T  21815830 ggagagagcttgatgctctgtaatgtatatttatacataacacgagatgggagagagcttgatgct 21815895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 101 - 222
Target Start/End: Original strand, 21815865 - 21815987
Alignment:
Q  101 cataatacgaggtgggagagagcttgatgctttgtaatgtatatttatacataatacgcgatgggagagggattgatgctatgagagcctatttacgctc 200  Q
    ||||| ||||| ||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||    
T  21815865 cataacacgagatgggagagagcttgatgctctgtaatgtatatttatacataacacacgatgggagagggcttgatgctatgagagcctatttacgctc 21815964  T
Q  201 aatacg-tgggggcttgatgtcc 222  Q
    |||||| ||||||||||||||||    
T  21815965 aatacgatgggggcttgatgtcc 21815987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 73 - 204
Target Start/End: Complemental strand, 3514960 - 3514829
Alignment:
Q  73 tgttaagaagttgagtccattgcatatgcataatacgaggtgggagagagcttgatgctttgtaatgtatatttatacataatacgcgatgggagaggga 172  Q
    |||||||| |||||||||||||||||  ||||||||||| |||||||| |||||||| | |||||||||||||||||||||||||| ||||||||||||     
T  3514960 tgttaagatgttgagtccattgcatactcataatacgagatgggagagggcttgatgatctgtaatgtatatttatacataatacgagatgggagagggc 3514861  T
Q  173 ttgatgctatgagagcctatttacgctcaata 204  Q
    |||||||  |||||||||||||||||||||||    
T  3514860 ttgatgcactgagagcctatttacgctcaata 3514829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 73 - 204
Target Start/End: Original strand, 15869083 - 15869214
Alignment:
Q  73 tgttaagaagttgagtccattgcatatgcataatacgaggtgggagagagcttgatgctttgtaatgtatatttatacataatacgcgatgggagaggga 172  Q
    ||||| || |||||||||||||||||  ||||||||| | |||| ||| |||||||||| |||||||||||||||||||||||||| ||||||||||||     
T  15869083 tgttaggatgttgagtccattgcatactcataatacgtgatgggggagggcttgatgctctgtaatgtatatttatacataatacgagatgggagagggc 15869182  T
Q  173 ttgatgctatgagagcctatttacgctcaata 204  Q
    |||||||||| |||||||||||||||||||||    
T  15869183 ttgatgctataagagcctatttacgctcaata 15869214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 73 - 204
Target Start/End: Complemental strand, 32851130 - 32850999
Alignment:
Q  73 tgttaagaagttgagtccattgcatatgcataatacgaggtgggagagagcttgatgctttgtaatgtatatttatacataatacgcgatgggagaggga 172  Q
    ||||| || |||||||||||||||||| ||||||| ||| |||| ||| |||||||||| ||||||||||||||||||| |||  | ||||||||||||     
T  32851130 tgttaggatgttgagtccattgcatattcataatatgagatgggggagggcttgatgctctgtaatgtatatttatacacaatctgagatgggagagggc 32851031  T
Q  173 ttgatgctatgagagcctatttacgctcaata 204  Q
    |||||||| || ||||||||||||||||||||    
T  32851030 ttgatgctctgggagcctatttacgctcaata 32850999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 113 - 219
Target Start/End: Complemental strand, 15099096 - 15098989
Alignment:
Q  113 tgggagagagcttgatgctttgtaatgtatatttatacataatacgcgatgggagagggattgatgctatgagagcctatttacgctcaatacg-tgggg 211  Q
    |||| ||| |||||||||| |||||||||||||||||||||||| | || ||| ||||| |||||||| || |||||||||||||||||||||| |||||    
T  15099096 tgggtgagggcttgatgctctgtaatgtatatttatacataatatgtgaagggggagggtttgatgctctgtgagcctatttacgctcaatacgttgggg 15098997  T
Q  212 gcttgatg 219  Q
    ||||||||    
T  15098996 gcttgatg 15098989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 113 - 219
Target Start/End: Complemental strand, 19857329 - 19857222
Alignment:
Q  113 tgggagagagcttgatgctttgtaatgtatatttatacataatacgcgatgggagagggattgatgctatgagagcctatttacgctcaatacg-tgggg 211  Q
    |||| ||| |||||||||| |||||||||||||||||||||||| | || ||||||||| |||||||| || |||||||||||||||||||| | |||||    
T  19857329 tgggtgagggcttgatgctctgtaatgtatatttatacataatatgtgaagggagagggcttgatgctctgtgagcctatttacgctcaatatgttgggg 19857230  T
Q  212 gcttgatg 219  Q
    ||||||||    
T  19857229 gcttgatg 19857222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 73 - 219
Target Start/End: Complemental strand, 13844387 - 13844243
Alignment:
Q  73 tgttaagaagttgagtccattgcatatgcataatacgaggtgggagagagcttgatgctttgtaatgtatatttatacataatacgcgatgggagaggga 172  Q
    |||||||| |||||||||||||||||  |||  ||||   |||| ||| |||||||||| |||||||||||||||||||||||| | || ||||||||      
T  13844387 tgttaagatgttgagtccattgcatactcatt-tacgt--tgggtgagggcttgatgctctgtaatgtatatttatacataatatgtgaagggagaggac 13844291  T
Q  173 ttgatgctatgagagcctatttacgctcaatacg-tgggggcttgatg 219  Q
    |||||||| || ||||||||||| |||||||||| |||||||||||||    
T  13844290 ttgatgctctgtgagcctatttaagctcaatacgttgggggcttgatg 13844243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 113 - 219
Target Start/End: Complemental strand, 362002 - 361895
Alignment:
Q  113 tgggagagagcttgatgctttgtaatgtatatttatacataatacgcgatgggagagggattgatgctatgagagcctatttacgctcaatacg-tgggg 211  Q
    |||| ||| |||||||||| |||||||||||||||||||||||| | || ||||||| | |||||||| || |||||||||||| ||||||| | |||||    
T  362002 tgggtgagggcttgatgctctgtaatgtatatttatacataatatgtgaagggagagagcttgatgctctgtgagcctatttacactcaatatgttgggg 361903  T
Q  212 gcttgatg 219  Q
    ||||||||    
T  361902 gcttgatg 361895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 35812534 - 35812587
Alignment:
Q  167 gagggattgatgctatgagagcctatttacgctcaatacg-tgggggcttgatg 219  Q
    ||||| ||||||| ||| |||||||||||||||||||||| |||||||||||||    
T  35812534 gagggcttgatgccatgtgagcctatttacgctcaatacgttgggggcttgatg 35812587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 10357578 - 10357631
Alignment:
Q  167 gagggattgatgctatgagagcctatttacgctcaatacg-tgggggcttgatg 219  Q
    ||||| |||||||  || |||||||||||||||||||||| |||||||||||||    
T  10357578 gagggtttgatgccctgtgagcctatttacgctcaatacgttgggggcttgatg 10357631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 51984 - 52192
Alignment:
Q  15 agatgaaggatgatgttccaatttattggatttgtattaagaagttaatgttctaaaatgttaagaagttgagtccattgcatatgcataatacgaggtg 114  Q
    |||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||| |||||||||||| ||    
T  51984 agataaaggatgatgttccaatttattggatttgtattaagaagtcgatgttctaaaatgttaaggagttgagtccattgcatacgcataatacgagatg 52083  T
Q  115 ggagagagcttgatgctttgtaatgtatatttatacataatacgcgatgggagagggattgatgctatgagagcctatttacgctcaatacg-tgggggc 213  Q
    | ||| ||||||||||| |||||||||||||||||||||| ||||||||| |||||| |||||||| ||||||||||||||||||||||||| ||||||     
T  52084 gtagatagcttgatgctctgtaatgtatatttatacataacacgcgatggtagagggcttgatgctctgagagcctatttacgctcaatacgatggggga 52183  T
Q  214 ttgatgtcc 222  Q
    |||||||||    
T  52184 ttgatgtcc 52192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 23 - 222
Target Start/End: Original strand, 32452038 - 32452238
Alignment:
Q  23 gatgatgttccaatttattggatttgtattaagaagttaatgttctaaaatgttaagaagttgagtccattgcatatgcataatacgaggtgggagagag 122  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||| |||||||||||| ||| ||||||    
T  32452038 gatgatgttccaatttattggatttgtattaagaagtcgatgttctaaaatgttaaggagttgagtccattgcatacgcataatacgagatggtagagag 32452137  T
Q  123 cttgatgctttgtaatgtatatttatacataatacgcgatgggagagggattgatgctatgagagcctatttacgctcaatacg-tgggggcttgatgtc 221  Q
    ||||||||| |||||||||||||||||||||| |  |||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  32452138 cttgatgctctgtaatgtatatttatacataaaaaacgatggtagagggattgatgctctgagagcctatttacgctcaatacgatgggggcttgatgtc 32452237  T
Q  222 c 222  Q
    |    
T  32452238 c 32452238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 92
Target Start/End: Original strand, 22413239 - 22413315
Alignment:
Q  15 agatgaaggatgatgttccaatttattggatttgtattaagaagttaatgttctaaaatgttaagaagttgagtccat 92  Q
    ||||||| ||||||||||||| ||||||||||| || ||||| || |||||| ||| ||||||||  |||||||||||    
T  22413239 agatgaaagatgatgttccaaattattggatttata-taagaggtcaatgttttaagatgttaagttgttgagtccat 22413315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 6478347 - 6478400
Alignment:
Q  167 gagggattgatgctatgagagcctatttacgctcaatacg-tgggggcttgatg 219  Q
    ||||| |||||||  || |||||||||||||||||||||| |||||||||||||    
T  6478347 gagggtttgatgccctgtgagcctatttacgctcaatacgttgggggcttgatg 6478400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 9974880 - 9974827
Alignment:
Q  167 gagggattgatgctatgagagcctatttacgctcaatacg-tgggggcttgatg 219  Q
    ||||| |||||||  || |||||||||||||||||||||| |||||||||||||    
T  9974880 gagggcttgatgccctgtgagcctatttacgctcaatacgttgggggcttgatg 9974827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 19202301 - 19202354
Alignment:
Q  167 gagggattgatgctatgagagcctatttacgctcaatacg-tgggggcttgatg 219  Q
    ||||| |||||||  || |||||||||||||||||||||| |||||||||||||    
T  19202301 gagggcttgatgccctgtgagcctatttacgctcaatacgttgggggcttgatg 19202354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 92
Target Start/End: Original strand, 20520294 - 20520370
Alignment:
Q  15 agatgaaggatgatgttccaatttattggatttgtattaagaagttaatgttctaaaatgttaagaagttgagtccat 92  Q
    ||||||| ||| ||||||||| ||||||||||| || ||||| || |||||||||| || |||||  |||||||||||    
T  20520294 agatgaaagataatgttccaaattattggatttata-taagaggtcaatgttctaagatattaagttgttgagtccat 20520370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 24436008 - 24435955
Alignment:
Q  167 gagggattgatgctatgagagcctatttacgctcaatacg-tgggggcttgatg 219  Q
    ||||| |||||||  || |||||||||||||||||||||| |||||||||||||    
T  24436008 gagggcttgatgccctgtgagcctatttacgctcaatacgttgggggcttgatg 24435955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 24782002 - 24782055
Alignment:
Q  167 gagggattgatgctatgagagcctatttacgctcaatacg-tgggggcttgatg 219  Q
    ||||| ||||||| ||| ||||||||||||| |||||||| |||||||||||||    
T  24782002 gagggcttgatgccatgtgagcctatttacgttcaatacgttgggggcttgatg 24782055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 218
Target Start/End: Original strand, 5032461 - 5032513
Alignment:
Q  167 gagggattgatgctatgagagcctatttacgctcaatacg-tgggggcttgat 218  Q
    ||||| |||||||  || |||||||||||||||||||||| ||||||||||||    
T  5032461 gagggcttgatgccctgtgagcctatttacgctcaatacgttgggggcttgat 5032513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 15 - 220
Target Start/End: Original strand, 19801526 - 19801731
Alignment:
Q  15 agatgaaggatgatgttccaatttattggatttgtattaagaagttaatgttctaaaatgttaagaagttgagtccattgcatatgcataatacgaggtg 114  Q
    ||||||||||||||||||||| ||||| ||||||| |||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  19801526 agatgaaggatgatgttccaacttatttgatttgtgttaagaagtcgatgttctaaaatgttaagaagttgagtccattgcatacgcataatacgagatg 19801625  T
Q  115 ggagagagcttgatgctttgtaatgtatatttatacataatacgcgatgggagagggattgatgctatgagagcctatttacgctcaatacgtgggggct 214  Q
    | ||||||||||||||| |||| ||||| ||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||  | |||||    
T  19801626 gtagagagcttgatgctctgtattgtatctttatacataatacgcgatggtagagggcttgatgctctgagagcctatttacgctcaatacacgagggct 19801725  T
Q  215 tgatgt 220  Q
    ||||||    
T  19801726 tgatgt 19801731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 39833723 - 39833623
Alignment:
Q  122 gcttgatgctttgtaatgtatatttatacataatacgcgatgggagagggattgatgctatgagagcctatttacgctcaatacgtgggggcttgatgtc 221  Q
    |||||||||| |||||||||||||||||||||||| | || ||||||||| |||||||| || ||||||||||||||||||||||| |||||||||||||    
T  39833723 gcttgatgctctgtaatgtatatttatacataatatgagaagggagagggcttgatgctctgtgagcctatttacgctcaatacgttggggcttgatgtc 39833624  T
Q  222 c 222  Q
    |    
T  39833623 c 39833623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 113 - 219
Target Start/End: Original strand, 38550365 - 38550472
Alignment:
Q  113 tgggagagagcttgatgctttgtaatgtatatttatacataatacgcgatgggagagggattgatgctatgagagcctatttacgctcaatacg-tgggg 211  Q
    |||| ||| |||||||||| |||||||||||||||||||||||| | || ||||||||| |||||||| || |||||||||||||||||||| | |||||    
T  38550365 tgggtgagggcttgatgctctgtaatgtatatttatacataatatgtgaagggagagggcttgatgctctgtgagcctatttacgctcaatatgttgggg 38550464  T
Q  212 gcttgatg 219  Q
    ||||||||    
T  38550465 gcttgatg 38550472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 73 - 204
Target Start/End: Original strand, 20982962 - 20983090
Alignment:
Q  73 tgttaagaagttgagtccattgcatatgcataatacgaggtgggagagagcttgatgctttgtaatgtatatttatacataatacgcgatgggagaggga 172  Q
    |||||||| |||||||||||||||||  |||  ||||   |||| || ||||||||||| |||||||||||||||||||||||| | || |||||||||     
T  20982962 tgttaagatgttgagtccattgcatactcatt-tacgt--tgggtgaaagcttgatgctctgtaatgtatatttatacataatatgtgaagggagagggg 20983058  T
Q  173 ttgatgctatgagagcctatttacgctcaata 204  Q
    |||||| | || ||||||||||||||||||||    
T  20983059 ttgatgttctgtgagcctatttacgctcaata 20983090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 113 - 219
Target Start/End: Original strand, 27472662 - 27472769
Alignment:
Q  113 tgggagagagcttgatgctttgtaatgtatatttatacataatacgcgatgggagagggattgatgctatgagagcctatttacgctcaatacg-tgggg 211  Q
    |||| ||| |||||||||| |||||| ||||||||||||||||| | || ||||||||| |||||||| || |||||||||||| ||||||| | |||||    
T  27472662 tgggtgagggcttgatgctctgtaatatatatttatacataatatgtgaagggagagggcttgatgctctgtgagcctatttacactcaatatgttgggg 27472761  T
Q  212 gcttgatg 219  Q
    ||||||||    
T  27472762 gcttgatg 27472769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 124 - 219
Target Start/End: Original strand, 13428427 - 13428523
Alignment:
Q  124 ttgatgctttgtaatgtatatttatacataatacgcgatgggagagggattgatgctatgagagcctatttacgctcaatacg-tgggggcttgatg 219  Q
    |||||||| |||||||||||||||||||||||| | || |||| |||  |||||||| || |||||||||||||||||||| | |||||||||||||    
T  13428427 ttgatgctctgtaatgtatatttatacataatatgtgaagggaaaggacttgatgctctgtgagcctatttacgctcaatatgttgggggcttgatg 13428523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 122 - 219
Target Start/End: Original strand, 1323458 - 1323558
Alignment:
Q  122 gcttgatgctttgtaatgtatatttatacataatacgcgatgg--gagagggattgatgctatgagagcctatttacgctcaatacg-tgggggcttgat 218  Q
    |||||||||| |||||||||||||||||||||||| | || ||  ||||||| |||||| | || |||| ||||||||||||||| | ||||||||||||    
T  1323458 gcttgatgctctgtaatgtatatttatacataatatgtgaagggagagagggcttgatgatctgtgagcttatttacgctcaatatgttgggggcttgat 1323557  T
Q  219 g 219  Q
    |    
T  1323558 g 1323558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 167 - 222
Target Start/End: Original strand, 19801719 - 19801775
Alignment:
Q  167 gagggattgatgctatgagagcctatttacgctcaatacg-tgggggcttgatgtcc 222  Q
    ||||| |||||| | ||||||||||||||||||||||||| ||||||||||||||||    
T  19801719 gagggcttgatgttctgagagcctatttacgctcaatacgatgggggcttgatgtcc 19801775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 19127946 - 19127893
Alignment:
Q  167 gagggattgatgctatgagagcctatttacgctcaatacgt-gggggcttgatg 219  Q
    ||||| ||||| | ||| ||||||||||||||||||||||| ||||||||||||    
T  19127946 gagggcttgataccatgtgagcctatttacgctcaatacgtcgggggcttgatg 19127893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 39937107 - 39937160
Alignment:
Q  167 gagggattgatgctatgagagcctatttacgctcaatacg-tgggggcttgatg 219  Q
    ||||| |||||||  || |||||||||||||||||||||| |||||||||||||    
T  39937107 gagggcttgatgccctgcgagcctatttacgctcaatacgttgggggcttgatg 39937160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 138; Significance: 3e-72; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 15 - 222
Target Start/End: Complemental strand, 18456736 - 18456517
Alignment:
Q  15 agatgaaggatgatgttccaatttattggatttgtattaagaagttaatgttctaaaatgttaagaagttgagtccattgcatatgcataatacgaggtg 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||| |||||||||||| ||    
T  18456736 agatgaaggatgatgttccaatttattggatttgtattaagaagtcgatgttctaaaatgttaggaagttgagtccattgcatacgcataatacgagatg 18456637  T
Q  115 gga-----------gagagcttgatgctttgtaatgtatatttatacataatacgcgatgggagagggattgatgctatgagagcctatttacgctcaat 203  Q
    |||           |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||    
T  18456636 ggaacgagatgggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggcttgatcctctgagagcctatttacgctcaat 18456537  T
Q  204 acg-tgggggcttgatgtcc 222  Q
    ||| ||||||||||||||||    
T  18456536 acgatgggggcttgatgtcc 18456517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 15 - 222
Target Start/End: Complemental strand, 18461896 - 18461677
Alignment:
Q  15 agatgaaggatgatgttccaatttattggatttgtattaagaagttaatgttctaaaatgttaagaagttgagtccattgcatatgcataatacgaggtg 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||| |||||||||||| ||    
T  18461896 agatgaaggatgatgttccaatttattggatttgtattaagaagtcgatgttctaaaatgttaggaagttgagtccattgcatacgcataatacgagatg 18461797  T
Q  115 gga-----------gagagcttgatgctttgtaatgtatatttatacataatacgcgatgggagagggattgatgctatgagagcctatttacgctcaat 203  Q
    |||           |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||    
T  18461796 ggaacgagatgggagagagcttgatgctctgtaatgtatatttatacataatacgcgatgggagagggcttgatcctctgagagcctatttacgctcaat 18461697  T
Q  204 acg-tgggggcttgatgtcc 222  Q
    ||| ||||||||||||||||    
T  18461696 acgatgggggcttgatgtcc 18461677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 15 - 180
Target Start/End: Original strand, 18821945 - 18822111
Alignment:
Q  15 agatgaaggatgatgttccaatttattggatttgtattaagaa-gttaatgttctaaaatgttaagaagttgagtccattgcatatgcataatacgaggt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||| ||||||||||||||||||||| |||||||||||| |    
T  18821945 agatgaaggatgatgttccaatttattggatttgtattaagaaagtcgatgttctaaaatgttgagaagttgagtccattgcatacgcataatacgagat 18822044  T
Q  114 gggagagagcttgatgctttgtaatgtatatttatacataatacgcgatgggagagggattgatgct 180  Q
    || ||||||||||||||| |||||||||||||||||||||||| | ||||| |||| | ||||||||    
T  18822045 ggtagagagcttgatgctctgtaatgtatatttatacataatatgtgatggtagagagcttgatgct 18822111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 117 - 222
Target Start/End: Original strand, 18822097 - 18822203
Alignment:
Q  117 agagagcttgatgctttgtaatgtatatttatacataatacgcgatgggagagggattgatgctatgagagcctatttacgctcaatacg-tgggggctt 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||| |||||||||    
T  18822097 agagagcttgatgctttgtaatgtatatttatacataatacgcgatggtagagggcttgatgctctgagagcctatttacgctcaatacgatgggggctt 18822196  T
Q  216 gatgtcc 222  Q
    |||||||    
T  18822197 gatgtcc 18822203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 73 - 219
Target Start/End: Original strand, 25956958 - 25957102
Alignment:
Q  73 tgttaagaagttgagtccattgcatatgcataatacgaggtgggagagagcttgatgctttgtaatgtatatttatacataatacgcgatgggagaggga 172  Q
    |||||||| |||||||||||||||||  |||  ||||   |||| ||| |||||||||| |||||||||||||||||||||||| | || |||||||||     
T  25956958 tgttaagatgttgagtccattgcatactcatt-tacgt--tgggtgagggcttgatgctctgtaatgtatatttatacataatatgtgaagggagagggc 25957054  T
Q  173 ttgatgctatgagagcctatttacgctcaatacg-tgggggcttgatg 219  Q
    |||||||| || |||||||||||||||||||||| |||||||||||||    
T  25957055 ttgatgctctgtgagcctatttacgctcaatacgttgggggcttgatg 25957102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 135 - 204
Target Start/End: Complemental strand, 18319620 - 18319551
Alignment:
Q  135 taatgtatatttatacataatacgcgatgggagagggattgatgctatgagagcctatttacgctcaata 204  Q
    ||||||||||||||||||||||||| | ||||||||| |||||||| |  ||||||||||||||||||||    
T  18319620 taatgtatatttatacataatacgcaaagggagagggcttgatgctcttggagcctatttacgctcaata 18319551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 113 - 204
Target Start/End: Complemental strand, 27850924 - 27850833
Alignment:
Q  113 tgggagagagcttgatgctttgtaatgtatatttatacataatacgcgatgggagagggattgatgctatgagagcctatttacgctcaata 204  Q
    |||| ||| |||||||||| | |||||||||||| |||||| |||| || ||||||||| |||||||| |  ||||||||||||||||||||    
T  27850924 tgggtgagggcttgatgctctataatgtatatttgtacatagtacgtgaggggagagggcttgatgctctatgagcctatttacgctcaata 27850833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 31733703 - 31733650
Alignment:
Q  167 gagggattgatgctatgagagcctatttacgctcaatacg-tgggggcttgatg 219  Q
    ||||||||||||| ||| |||||||||||||||||||||| |||||||||||||    
T  31733703 gagggattgatgccatgtgagcctatttacgctcaatacgttgggggcttgatg 31733650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 222
Target Start/End: Original strand, 23017252 - 23017308
Alignment:
Q  167 gagggattgatgctatgagagcctatttacgctcaatacg-tgggggcttgatgtcc 222  Q
    ||||| |||||||  || |||||||||||||||||||||| ||||||||||||||||    
T  23017252 gagggtttgatgccctgtgagcctatttacgctcaatacgttgggggcttgatgtcc 23017308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 17743044 - 17742991
Alignment:
Q  167 gagggattgatgctatgagagcctatttacgctcaatacg-tgggggcttgatg 219  Q
    ||||| |||||||| |  |||||||||||||||||||||| |||||||||||||    
T  17743044 gagggcttgatgctctaggagcctatttacgctcaatacgttgggggcttgatg 17742991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 18708413 - 18708361
Alignment:
Q  167 gagggattgatgctatgagagcctatttacgctcaatacgtgggggcttgatg 219  Q
    ||||| |||||||  || ||||||||||||||||||||||| |||| ||||||    
T  18708413 gagggcttgatgccttgtgagcctatttacgctcaatacgttgggggttgatg 18708361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 79429 - 79637
Alignment:
Q  15 agatgaaggatgatgttccaatttattggatttgtattaagaagttaatgttctaaaatgttaagaagttgagtccattgcatatgcataatacgaggtg 114  Q
    ||||||||||| |||||||||||||||||||| ||| ||||||||  ||||| ||||||||||||||||||||||||||||||| |||||||||  | ||    
T  79429 agatgaaggataatgttccaatttattggattagtaataagaagtcgatgttataaaatgttaagaagttgagtccattgcatacgcataatacatgatg 79528  T
Q  115 ggagagagcttgatgctttgtaatgtatatttatacataatacgcgatgggagagggattgatgctatgagagcctatttacgctcaatacg-tgggggc 213  Q
    | ||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||| | |||||||    
T  79529 gtagagagcttgatgctctgtaatgtatatttatacataatacgcgatggtagagggcttgatgctctgagagcctatttacgctcaataagatgggggc 79628  T
Q  214 ttgatgtcc 222  Q
    |||||||||    
T  79629 ttgatgtcc 79637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 131; Significance: 4e-68; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 15 - 177
Target Start/End: Original strand, 12756816 - 12756978
Alignment:
Q  15 agatgaaggatgatgttccaatttattggatttgtattaagaagttaatgttctaaaatgttaagaagttgagtccattgcatatgcataatacgaggtg 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||| |||||||||||| ||    
T  12756816 agatgaaggatgatgttccaatttattggatttgtattaagaagtcgatgttctaaaatgctaagaagttgagtccattgcatacgcataatacgagatg 12756915  T
Q  115 ggagagagcttgatgctttgtaatgtatatttatacataatacgcgatgggagagggattgat 177  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||    
T  12756916 ggagagagcttgatgctctgtattgtatatttatacataatacgcgatgggagagggcttgat 12756978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 73 - 219
Target Start/End: Original strand, 37727874 - 37728018
Alignment:
Q  73 tgttaagaagttgagtccattgcatatgcataatacgaggtgggagagagcttgatgctttgtaatgtatatttatacataatacgcgatgggagaggga 172  Q
    |||||||| |||||||||||||||||  |||  ||||   |||| |||||||||||||| |||||||||||||||||||||||| | || |||||||||     
T  37727874 tgttaagatgttgagtccattgcatactcatt-tacgt--tgggtgagagcttgatgctctgtaatgtatatttatacataatatgtgaagggagagggt 37727970  T
Q  173 ttgatgctatgagagcctatttacgctcaatacg-tgggggcttgatg 219  Q
    |||||||| |  |||||||||||||||||||||| |||||||||||||    
T  37727971 ttgatgctctttgagcctatttacgctcaatacgttgggggcttgatg 37728018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 73 - 219
Target Start/End: Complemental strand, 17232413 - 17232269
Alignment:
Q  73 tgttaagaagttgagtccattgcatatgcataatacgaggtgggagagagcttgatgctttgtaatgtatatttatacataatacgcgatgggagaggga 172  Q
    |||||||| |||||||||||||||||  |||  ||||   |||| ||| |||||||||| |||||||||||||||||||||||| | || |||||||||     
T  17232413 tgttaagatgttgagtccattgcatactcatt-tacgt--tgggtgagggcttgatgctatgtaatgtatatttatacataatatgtgaagggagagggc 17232317  T
Q  173 ttgatgctatgagagcctatttacgctcaatacg-tgggggcttgatg 219  Q
    |||||||| || |||||||||||||||||||| | |||||||||||||    
T  17232316 ttgatgctctgtgagcctatttacgctcaatatgttgggggcttgatg 17232269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 113 - 219
Target Start/End: Original strand, 9390070 - 9390177
Alignment:
Q  113 tgggagagagcttgatgctttgtaatgtatatttatacataatacgcgatgggagagggattgatgctatgagagcctatttacgctcaatacg-tgggg 211  Q
    |||| ||| |||||||||| |||||||||||||||||||||||| | || ||||||||| |||||||| || |||||||||||||||||||| | |||||    
T  9390070 tgggtgagggcttgatgctctgtaatgtatatttatacataatatgtgaagggagagggcttgatgctctgtgagcctatttacgctcaatatgttgggg 9390169  T
Q  212 gcttgatg 219  Q
    ||||||||    
T  9390170 gcttgatg 9390177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 73 - 222
Target Start/End: Original strand, 6170439 - 6170586
Alignment:
Q  73 tgttaagaagttgagtccattgcatatgcataatacgaggtgggagagagcttgatgctttgtaatgtatatttatacataatacgcgatgggagaggga 172  Q
    |||||||| |||||||||||||||||  |||  ||||   |||| ||| |||||||||| | |||||||||||||||||||||| | || |||||||||     
T  6170439 tgttaagatgttgagtccattgcatactcatt-tacgt--tgggtgagggcttgatgctctataatgtatatttatacataatatgtgaagggagagggc 6170535  T
Q  173 ttgatgctatgagagcctatttacgctcaatacg-tgggggcttgatgtcc 222  Q
    |||||||| |  |||||||||||||||||||||| ||||| ||||||||||    
T  6170536 ttgatgctctatgagcctatttacgctcaatacgttggggacttgatgtcc 6170586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 113 - 217
Target Start/End: Original strand, 45847997 - 45848102
Alignment:
Q  113 tgggagagagcttgatgctttgtaatgtatatttatacataatacgcgatgggagagggattgatgctatgagagcctatttacgctcaatacg-tgggg 211  Q
    |||| ||| |||||||||| |||||||||||||||||||||||| | || ||  ||||| |||||||| || |||||||||||||||||||| | |||||    
T  45847997 tgggtgagggcttgatgctctgtaatgtatatttatacataatatgtgaaggttgagggcttgatgctctgtgagcctatttacgctcaatatgttgggg 45848096  T
Q  212 gcttga 217  Q
    ||||||    
T  45848097 gcttga 45848102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 140 - 219
Target Start/End: Original strand, 14270435 - 14270515
Alignment:
Q  140 tatatttatacataatacgcgatgggagagggattgatgctatgagagcctatttacgctcaatacg-tgggggcttgatg 219  Q
    ||||||||||||||||| | || ||||||||| |||||||| || |||||||||||||||||||| | |||||||||||||    
T  14270435 tatatttatacataatatgtgaagggagagggcttgatgctctgtgagcctatttacgctcaatatgttgggggcttgatg 14270515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 141 - 204
Target Start/End: Original strand, 1543467 - 1543530
Alignment:
Q  141 atatttatacataatacgcgatgggagagggattgatgctatgagagcctatttacgctcaata 204  Q
    |||||||||||||||||| |||||||||||| |||||||| |  ||||||||||||||||||||    
T  1543467 atatttatacataatacgagatgggagagggcttgatgctctaggagcctatttacgctcaata 1543530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 18075582 - 18075634
Alignment:
Q  167 gagggattgatgctatgagagcctatttacgctcaatacgtgggggcttgatg 219  Q
    ||||| |||||||  || ||||||||||||||||||||||| |||||||||||    
T  18075582 gagggcttgatgccctgtgagcctatttacgctcaatacgttggggcttgatg 18075634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 219
Target Start/End: Complemental strand, 8468191 - 8468133
Alignment:
Q  162 tgggagagggattgatgctatgagagcctatttacgctcaatacg-tgggggcttgatg 219  Q
    |||| ||||| |||||||| || |||||||||||||||||||| | |||||||||||||    
T  8468191 tgggtgagggcttgatgctctgtgagcctatttacgctcaatatgttgggggcttgatg 8468133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 92
Target Start/End: Original strand, 15008600 - 15008677
Alignment:
Q  15 agatgaaggatgatgttccaatttattggatttgtattaagaagttaatg-ttctaaaatgttaagaagttgagtccat 92  Q
    |||||||| |||||||||||| ||||||||||| || ||||| || |||| |||||| ||||||||  |||||||||||    
T  15008600 agatgaagaatgatgttccaaattattggatttata-taagaggtcaatgtttctaagatgttaagttgttgagtccat 15008677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 8852262 - 8852315
Alignment:
Q  167 gagggattgatgctatgagagcctatttacgctcaatacg-tgggggcttgatg 219  Q
    ||||| |||||||  || |||||||||||||||||||||| |||||||||||||    
T  8852262 gagggcttgatgccctgtgagcctatttacgctcaatacgttgggggcttgatg 8852315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 13150633 - 13150686
Alignment:
Q  167 gagggattgatgctatgagagcctatttacgctcaatacg-tgggggcttgatg 219  Q
    ||||| ||||||| ||| |||||||||||||||||||||| || ||||||||||    
T  13150633 gagggcttgatgccatgtgagcctatttacgctcaatacgttgagggcttgatg 13150686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 32434728 - 32434781
Alignment:
Q  167 gagggattgatgctatgagagcctatttacgctcaatacg-tgggggcttgatg 219  Q
    ||||| ||||||| ||| |||| ||||||||||||||||| |||||||||||||    
T  32434728 gagggtttgatgccatgtgagcatatttacgctcaatacgttgggggcttgatg 32434781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 38227339 - 38227286
Alignment:
Q  167 gagggattgatgctatgagagcctatttacgctcaatacg-tgggggcttgatg 219  Q
    ||||| |||||||  || |||||||||||||||||||||| |||||||||||||    
T  38227339 gagggcttgatgccctgggagcctatttacgctcaatacgttgggggcttgatg 38227286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 219
Target Start/End: Complemental strand, 11066380 - 11066328
Alignment:
Q  168 agggattgatgctatgagagcctatttacgctcaatacg-tgggggcttgatg 219  Q
    |||| |||||||  || |||||||||||||||||||||| |||||||||||||    
T  11066380 agggcttgatgccctgtgagcctatttacgctcaatacgttgggggcttgatg 11066328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 218
Target Start/End: Complemental strand, 32300956 - 32300904
Alignment:
Q  167 gagggattgatgctatgagagcctatttacgctcaatacg-tgggggcttgat 218  Q
    ||||| |||||||  || |||||||||||||||||||||| ||||||||||||    
T  32300956 gagggcttgatgccctgggagcctatttacgctcaatacgttgggggcttgat 32300904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 15 - 180
Target Start/End: Original strand, 20523 - 20688
Alignment:
Q  15 agatgaaggatgatgttccaatttattggatttgtattaagaagttaatgttctaaaatgttaagaagttgagtccattgcatatgcataatacgaggtg 114  Q
    ||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  20523 agatgaaggatgatgttccaacttattggatttgtattaagaagtcgatgttctaaaatgttaagaagttgagtccattgcatacgcataatacgagatg 20622  T
Q  115 ggagagagcttgatgctttgtaatgtatatttatacataatacgcgatgggagagggattgatgct 180  Q
    | ||||||||||||||| | ||||||||||||||||||||||| |||||| |||| | ||||||||    
T  20623 gtagagagcttgatgctctataatgtatatttatacataatacacgatggcagagaggttgatgct 20688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 117 - 222
Target Start/End: Original strand, 20674 - 20780
Alignment:
Q  117 agagagcttgatgctttgtaatgtatatttatacataatacgcgatgggagagggattgatgctatgagagcctatttacgctcaatacg-tgggggctt 215  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||| |||||| |||||||| | ||||||||||||||||||||||| |||||||||    
T  20674 agagaggttgatgctctgtaatgtatatttatacataatacgcgatggtagagggcttgatgctctaagagcctatttacgctcaatacgatgggggctt 20773  T
Q  216 gatgtcc 222  Q
    |||||||    
T  20774 gatgtcc 20780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0716 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: scaffold0716
Description:

Target: scaffold0716; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 73 - 204
Target Start/End: Complemental strand, 4647 - 4516
Alignment:
Q  73 tgttaagaagttgagtccattgcatatgcataatacgaggtgggagagagcttgatgctttgtaatgtatatttatacataatacgcgatgggagaggga 172  Q
    |||||||| |||||||||||||||||  ||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||     
T  4647 tgttaagatgttgagtccattgcatactcataatacgagatgggagagggcttgatgctctgtaatgtatatttatacataatacgagatgggagagggc 4548  T
Q  173 ttgatgctatgagagcctatttacgctcaata 204  Q
    || ||||| |||||||||||||||||||||||    
T  4547 ttaatgctctgagagcctatttacgctcaata 4516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 73 - 204
Target Start/End: Complemental strand, 13311 - 13180
Alignment:
Q  73 tgttaagaagttgagtccattgcatatgcataatacgaggtgggagagagcttgatgctttgtaatgtatatttatacataatacgcgatgggagaggga 172  Q
    ||||| || |||||||||||||||||| ||||||| ||| |||| ||| |||||||||| ||||||||||||||||||| |||  | ||||||||||||     
T  13311 tgttaggatgttgagtccattgcatattcataatatgagatgggggagggcttgatgctctgtaatgtatatttatacacaatctgagatgggagagggc 13212  T
Q  173 ttgatgctatgagagcctatttacgctcaata 204  Q
    |||||||| || ||||||||||||||||||||    
T  13211 ttgatgctctgggagcctatttacgctcaata 13180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 73 - 204
Target Start/End: Complemental strand, 25012 - 24882
Alignment:
Q  73 tgttaagaagttgagtccattgcatatgcataatacgaggtgggagagagcttgatgctttgtaatgtatatttatacataatacgcgatgggagaggga 172  Q
    ||||| || ||||||||||||||| || ||||||  ||| |||| ||  |||||||||| ||||||||||||| ||||| |||  | ||||||||||||     
T  25012 tgttaggatgttgagtccattgcacattcataatctgagatgggggacggcttgatgctctgtaatgtatatt-atacacaatctgagatgggagagggc 24914  T
Q  173 ttgatgctatgagagcctatttacgctcaata 204  Q
    |||||||| || ||||||||||||||||||||    
T  24913 ttgatgctctgggagcctatttacgctcaata 24882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 73 - 204
Target Start/End: Complemental strand, 34898 - 34767
Alignment:
Q  73 tgttaagaagttgagtccattgcatatgcataatacgaggtgggagagagcttgatgctttgtaatgtatatttatacataatacgcgatgggagaggga 172  Q
    ||||| || |||||||||||||||||| ||||||||||| |||| ||| |||||||||| ||||||||||||||||||| |||  | ||||||||||||     
T  34898 tgttaggatgttgagtccattgcatattcataatacgagatgggggagggcttgatgctctgtaatgtatatttatacacaatctgagatgggagagggc 34799  T
Q  173 ttgatgctatgagagcctatttacgctcaata 204  Q
    |||||||| || ||||||||||| ||||||||    
T  34798 ttgatgctctgggagcctatttatgctcaata 34767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 73 - 204
Target Start/End: Original strand, 8669 - 8800
Alignment:
Q  73 tgttaagaagttgagtccattgcatatgcataatacgaggtgggagagagcttgatgctttgtaatgtatatttatacataatacgcgatgggagaggga 172  Q
    ||||| || |||||||||||||||||  ||||||||||| |||| ||| |||||||||| ||||||||||||||||||| |||| | |||||||||| |     
T  8669 tgttaggatgttgagtccattgcatactcataatacgagatgggggagggcttgatgctctgtaatgtatatttatacacaatatgagatgggagagagc 8768  T
Q  173 ttgatgctatgagagcctatttacgctcaata 204  Q
    |||||||| || ||||||||||||||||||||    
T  8769 ttgatgctctgggagcctatttacgctcaata 8800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 102 - 204
Target Start/End: Complemental strand, 9803 - 9701
Alignment:
Q  102 ataatacgaggtgggagagagcttgatgctttgtaatgtatatttatacataatacgcgatgggagagggattgatgctatgagagcctatttacgctca 201  Q
    |||||||| | |||||||| |||||||||| ||||||| |||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||    
T  9803 ataatacgtgatgggagagggcttgatgctctgtaatgaatatttatacataatacgagatgggagagggcttgatgctctgagagcctatttacgctca 9704  T
Q  202 ata 204  Q
    |||    
T  9703 ata 9701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 113 - 222
Target Start/End: Original strand, 28194823 - 28194933
Alignment:
Q  113 tgggagagagcttgatgctttgtaatgtatatttatacataatacgcgatgggagagggattgatgctatgagagcctatttacgctcaatacg-tgggg 211  Q
    |||| ||| |||||||||| |||||||||||||||||||||||| | || ||||||||| |||||||| || |||||||||||||||||||||| |||||    
T  28194823 tgggtgagggcttgatgctctgtaatgtatatttatacataatatgtgaagggagagggcttgatgctctgtgagcctatttacgctcaatacgttgggg 28194922  T
Q  212 gcttgatgtcc 222  Q
    |||||||||||    
T  28194923 gcttgatgtcc 28194933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 73 - 219
Target Start/End: Complemental strand, 43542902 - 43542758
Alignment:
Q  73 tgttaagaagttgagtccattgcatatgcataatacgaggtgggagagagcttgatgctttgtaatgtatatttatacataatacgcgatgggagaggga 172  Q
    |||||||| |||||||||||||||||  |||  ||||   |||| |||||||||||||| |||||||||||||||||||||||| | || |||||||||     
T  43542902 tgttaagatgttgagtccattgcatactcatt-tacgt--tgggtgagagcttgatgctctgtaatgtatatttatacataatatgtgaagggagagggc 43542806  T
Q  173 ttgatgctatgagagcctatttacgctcaatacg-tgggggcttgatg 219  Q
    |||||||| || || ||||||||||||||||||| |||||||||||||    
T  43542805 ttgatgctctgtgaccctatttacgctcaatacgttgggggcttgatg 43542758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 73 - 219
Target Start/End: Original strand, 41305924 - 41306068
Alignment:
Q  73 tgttaagaagttgagtccattgcatatgcataatacgaggtgggagagagcttgatgctttgtaatgtatatttatacataatacgcgatgggagaggga 172  Q
    |||||||| |||||||||||||||||  |||  ||||   |||| ||| |||||||||| |||||||||||||||||||||||| | || |||||||||     
T  41305924 tgttaagatgttgagtccattgcatactcatt-tacgt--tgggtgagggcttgatgctctgtaatgtatatttatacataatatgtgaagggagagggc 41306020  T
Q  173 ttgatgctatgagagcctatttacgctcaatacg-tgggggcttgatg 219  Q
    |||||||| || |||||||||||||||||||| | |||||||||||||    
T  41306021 ttgatgctctgtgagcctatttacgctcaatatgttgggggcttgatg 41306068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 113 - 222
Target Start/End: Complemental strand, 20636652 - 20636542
Alignment:
Q  113 tgggagagagcttgatgctttgtaatgtatatttatacataatacgcgatgggagagggattgatgctatgagagcctatttacgctcaatacg-tgggg 211  Q
    |||| ||| |||||||||| |||||||||||||||| ||||||| | || ||||||||| |||||||| || ||||||||||| |||||||||| |||||    
T  20636652 tgggtgagggcttgatgctctgtaatgtatatttatccataatatgtgaagggagagggcttgatgctctgtgagcctatttatgctcaatacgttgggg 20636553  T
Q  212 gcttgatgtcc 222  Q
    |||||||||||    
T  20636552 gcttgatgtcc 20636542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 73 - 219
Target Start/End: Original strand, 35982016 - 35982160
Alignment:
Q  73 tgttaagaagttgagtccattgcatatgcataatacgaggtgggagagagcttgatgctttgtaatgtatatttatacataatacgcgatgggagaggga 172  Q
    |||||||| |||||||||||||||||  |||  ||||   |||| ||| |||||||||| |||||||| ||||||||||||||| | || |||||||||     
T  35982016 tgttaagatgttgagtccattgcatactcatt-tacgt--tgggtgagggcttgatgctctgtaatgtttatttatacataatatgtgaagggagagggc 35982112  T
Q  173 ttgatgctatgagagcctatttacgctcaatacg-tgggggcttgatg 219  Q
    |||||||| || |||||||||||||||||||| | |||||||||||||    
T  35982113 ttgatgctctgtgagcctatttacgctcaatatgttgggggcttgatg 35982160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 124 - 219
Target Start/End: Original strand, 46382940 - 46383036
Alignment:
Q  124 ttgatgctttgtaatgtatatttatacataatacgcgatgggagagggattgatgctatgagagcctatttacgctcaatacg-tgggggcttgatg 219  Q
    |||||||| |||||||||||||||||||||||| | || ||||||||| |||||||| || ||||||||||||| |||||| | |||||||||||||    
T  46382940 ttgatgctctgtaatgtatatttatacataatatgtgaagggagagggtttgatgctctgtgagcctatttacgttcaatatgttgggggcttgatg 46383036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 124 - 218
Target Start/End: Complemental strand, 43697110 - 43697015
Alignment:
Q  124 ttgatgctttgtaatgtatatttatacataatacgcgatgggagagggattgatgctatgagagcctatttacgctcaatacg-tgggggcttgat 218  Q
    |||||||| |||||||||||||||||||||||| | || ||||||||| |||||||| |  ||| |||||||||||||||||| ||||||||||||    
T  43697110 ttgatgctctgtaatgtatatttatacataatatgtgaagggagagggcttgatgctctatgagtctatttacgctcaatacgttgggggcttgat 43697015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 41227790 - 41227843
Alignment:
Q  167 gagggattgatgctatgagagcctatttacgctcaatacg-tgggggcttgatg 219  Q
    ||||| ||||||| ||| |||||||||||||||||||||| |||||||||||||    
T  41227790 gagggcttgatgccatgtgagcctatttacgctcaatacgttgggggcttgatg 41227843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 48300818 - 48300765
Alignment:
Q  167 gagggattgatgctatgagagcctatttacgctcaatacg-tgggggcttgatg 219  Q
    ||||| ||||||| ||| |||||||||||||||||||||| |||||||||||||    
T  48300818 gagggtttgatgccatgtgagcctatttacgctcaatacgttgggggcttgatg 48300765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 431594 - 431541
Alignment:
Q  167 gagggattgatgctatgagagcctatttacgctcaatacg-tgggggcttgatg 219  Q
    ||||| |||||||  || |||||||||||||||||||||| |||||||||||||    
T  431594 gagggcttgatgccctgggagcctatttacgctcaatacgttgggggcttgatg 431541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 92
Target Start/End: Original strand, 16368387 - 16368463
Alignment:
Q  15 agatgaaggatgatgttccaatttattggatttgtattaagaagttaatgttctaaaatgttaagaagttgagtccat 92  Q
    ||||||| ||||||||||||| ||||||||||| || ||||| ||  ||||||||| ||| ||||  |||||||||||    
T  16368387 agatgaatgatgatgttccaaattattggatttata-taagaggtcgatgttctaagatgctaagttgttgagtccat 16368463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 26064957 - 26064881
Alignment:
Q  16 gatgaaggatgatgttccaatttattggatttgtattaagaagttaatg-ttctaaaatgttaagaagttgagtccat 92  Q
    |||||| ||||||||||||| ||||||||||| || ||||| || |||| |||||| ||||||||  |||||||||||    
T  26064957 gatgaaagatgatgttccaaattattggatttata-taagaggtcaatgtttctaagatgttaagttgttgagtccat 26064881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 92
Target Start/End: Complemental strand, 50686631 - 50686555
Alignment:
Q  15 agatgaaggatgatgttccaatttattggatttgtattaagaagttaatgttctaaaatgttaagaagttgagtccat 92  Q
    ||||||| |||| |||||||| ||||||||||| || ||||| ||  ||||||||| ||||||||  |||||||||||    
T  50686631 agatgaaagatgttgttccaaattattggatttata-taagaggtcgatgttctaagatgttaagttgttgagtccat 50686555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 41050137 - 41050169
Alignment:
Q  15 agatgaaggatgatgttccaatttattggattt 47  Q
    ||||||||||||||||||||| |||||||||||    
T  41050137 agatgaaggatgatgttccaaattattggattt 41050169  T

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Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 73 - 222
Target Start/End: Original strand, 5889496 - 5889643
Alignment:
Q  73 tgttaagaagttgagtccattgcatatgcataatacgaggtgggagagagcttgatgctttgtaatgtatatttatacataatacgcgatgggagaggga 172  Q
    |||||||| |||||||||||||||||  |||  ||||   |||| ||| |||||||||| |||||||||||||||||||||||| | ||  ||||||||     
T  5889496 tgttaagatgttgagtccattgcatactcatt-tacgt--tgggtgagggcttgatgctctgtaatgtatatttatacataatatgtgaaaggagagggc 5889592  T
Q  173 ttgatgctatgagagcctatttacgctcaatacg-tgggggcttgatgtcc 222  Q
    |||||||| || |||||||||||||||||||||| ||||||||||||||||    
T  5889593 ttgatgctctgtgagcctatttacgctcaatacgttgggggcttgatgtcc 5889643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 68 - 222
Target Start/End: Original strand, 21741873 - 21742025
Alignment:
Q  68 taaaatgttaagaagttgagtccattgcatatgcataatacgaggtgggagagagcttgatgctttgtaatgtatatttatacataatacgcgatgggag 167  Q
    |||| |||||||| |||||||||||||||||  |||  ||||   |||| ||| |||||||||| |||||||||||||||||||||||| | ||  ||||    
T  21741873 taaattgttaagatgttgagtccattgcatactcatt-tacgt--tgggtgagggcttgatgctctgtaatgtatatttatacataatatgtgaaaggag 21741969  T
Q  168 agggattgatgctatgagagcctatttacgctcaatacg-tgggggcttgatgtcc 222  Q
    |||| |||||||| || |||||||||||||||||||||| || |||||||||||||    
T  21741970 agggtttgatgctctgtgagcctatttacgctcaatacgttgagggcttgatgtcc 21742025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 19920670 - 19920617
Alignment:
Q  167 gagggattgatgctatgagagcctatttacgctcaatacg-tgggggcttgatg 219  Q
    ||||| ||||||| ||| |||||||||||||||||||||| |||||||||||||    
T  19920670 gagggtttgatgccatgtgagcctatttacgctcaatacgttgggggcttgatg 19920617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 222
Target Start/End: Original strand, 29915436 - 29915500
Alignment:
Q  159 cgatgggagagggattgatgctatgagagcctatttacgctcaatacg-tgggggcttgatgtcc 222  Q
    ||||||| ||||| |||||||| || |||||||||||||||||||| | | ||||||||||||||    
T  29915436 cgatgggcgagggcttgatgctctgtgagcctatttacgctcaataagttcggggcttgatgtcc 29915500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 73 - 219
Target Start/End: Original strand, 44121 - 44265
Alignment:
Q  73 tgttaagaagttgagtccattgcatatgcataatacgaggtgggagagagcttgatgctttgtaatgtatatttatacataatacgcgatgggagaggga 172  Q
    |||||||| |||||||||||||||||  |||  ||||   |||| ||| |||||||||| |||||||||||||||||||||||| | || |||||||||     
T  44121 tgttaagatgttgagtccattgcatactcatt-tacgt--tgggtgagggcttgatgctctgtaatgtatatttatacataatatgtgaagggagagggc 44217  T
Q  173 ttgatgctatgagagcctatttacgctcaatacg-tgggggcttgatg 219  Q
    |||||||| || |||||||||||||||||||| | |||||||||||||    
T  44218 ttgatgctctgtgagcctatttacgctcaatatgttgggggcttgatg 44265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 73 - 204
Target Start/End: Complemental strand, 74600 - 74469
Alignment:
Q  73 tgttaagaagttgagtccattgcatatgcataatacgaggtgggagagagcttgatgctttgtaatgtatatttatacataatacgcgatgggagaggga 172  Q
    ||||| || |||||||||||||||||| ||||||||||| |||| ||| | |||||||| ||||||||||||||||||| |||  | ||||||||||||     
T  74600 tgttaggatgttgagtccattgcatattcataatacgagatgggggagggtttgatgctctgtaatgtatatttatacacaatctgagatgggagagggc 74501  T
Q  173 ttgatgctatgagagcctatttacgctcaata 204  Q
    |||||| | || ||| ||||||| ||||||||    
T  74500 ttgatgttctgggagtctatttatgctcaata 74469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0810 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0810
Description:

Target: scaffold0810; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 113 - 219
Target Start/End: Complemental strand, 2792 - 2685
Alignment:
Q  113 tgggagagagcttgatgctttgtaatgtatatttatacataatacgcgatgggagagggattgatgctatgagagcctatttacgctcaatacg-tgggg 211  Q
    |||| ||| |||||||||| |||||||||||||||||||||||| | || ||||||||| ||||| || || |||||||||| ||||||||||| |||||    
T  2792 tgggtgagggcttgatgctctgtaatgtatatttatacataatatgtgaagggagagggcttgatactctgtgagcctatttgcgctcaatacgttgggg 2693  T
Q  212 gcttgatg 219  Q
    ||||||||    
T  2692 gcttgatg 2685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 113 - 204
Target Start/End: Original strand, 47049 - 47140
Alignment:
Q  113 tgggagagagcttgatgctttgtaatgtatatttatacataatacgcgatgggagagggattgatgctatgagagcctatttacgctcaata 204  Q
    |||| ||| |||||||||| |||||||||||||||||||||||| | |||||||||||| |||||| | || ||||||||||||||||||||    
T  47049 tgggtgagggcttgatgctctgtaatgtatatttatacataatatgtgatgggagagggcttgatgttctgtgagcctatttacgctcaata 47140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1792 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold1792
Description:

Target: scaffold1792; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 122 - 204
Target Start/End: Complemental strand, 134 - 52
Alignment:
Q  122 gcttgatgctttgtaatgtatatttatacataatacgcgatgggagagggattgatgctatgagagcctatttacgctcaata 204  Q
    |||||| ||| ||||||||||||||||||||||||||||| ||||||||| |||||||| |  ||||||||||||||||||||    
T  134 gcttgacgctctgtaatgtatatttatacataatacgcgaagggagagggcttgatgctcttggagcctatttacgctcaata 52  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 122 - 204
Target Start/End: Original strand, 23766 - 23848
Alignment:
Q  122 gcttgatgctttgtaatgtatatttatacataatacgcgatgggagagggattgatgctatgagagcctatttacgctcaata 204  Q
    |||||| ||| ||||||||||||||||||||||||||||| ||||||||| |||||||| |  ||||||||||||||||||||    
T  23766 gcttgacgctctgtaatgtatatttatacataatacgcgaagggagagggcttgatgctcttggagcctatttacgctcaata 23848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 73 - 204
Target Start/End: Original strand, 20790 - 20918
Alignment:
Q  73 tgttaagaagttgagtccattgcatatgcataatacgaggtgggagagagcttgatgctttgtaatgtatatttatacataatacgcgatgggagaggga 172  Q
    |||||||| |||||||||||||||||  |||  ||||   |||| ||| |||||||||| | ||||||||||||||||||||||||| | |||||||||     
T  20790 tgttaagatgttgagtccattgcatactcatt-tacgt--tgggtgagggcttgatgctctataatgtatatttatacataatacgcaaagggagagggc 20886  T
Q  173 ttgatgctatgagagcctatttacgctcaata 204  Q
    |||||||| |  ||||||||||||||||||||    
T  20887 ttgatgctcttggagcctatttacgctcaata 20918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 118 - 219
Target Start/End: Complemental strand, 106307 - 106205
Alignment:
Q  118 gagagcttgatgctttgtaatgtatatttatacataatacgcgatgggagagggattgatgctatgagagcctatttacgctcaatacg-tgggggcttg 216  Q
    ||||| |||||||| |||||||||||||||||||||||| | || ||||||| | |||||||| |  |||||||||||||||||||| | ||||||||||    
T  106307 gagagtttgatgctctgtaatgtatatttatacataatatgtgaagggagagagcttgatgctctatgagcctatttacgctcaatatgttgggggcttg 106208  T
Q  217 atg 219  Q
    |||    
T  106207 atg 106205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 41286 - 41339
Alignment:
Q  167 gagggattgatgctatgagagcctatttacgctcaatacg-tgggggcttgatg 219  Q
    ||||| |||||||  || |||||||||||||||||||||| |||||||||||||    
T  41286 gagggtttgatgccctgtgagcctatttacgctcaatacgttgggggcttgatg 41339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 57755 - 57702
Alignment:
Q  167 gagggattgatgctatgagagcctatttacgctcaatacg-tgggggcttgatg 219  Q
    ||||| |||||||  || |||||||||||||||||||||| |||||||||||||    
T  57755 gagggcttgatgccctgtgagcctatttacgctcaatacgttgggggcttgatg 57702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 78041 - 77988
Alignment:
Q  167 gagggattgatgctatgagagcctatttacgctcaatacg-tgggggcttgatg 219  Q
    ||||| |||||||  || |||||||||||||||||||||| |||||||||||||    
T  78041 gagggcttgatgccctgtgagcctatttacgctcaatacgttgggggcttgatg 77988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 78449 - 78502
Alignment:
Q  167 gagggattgatgctatgagagcctatttacgctcaatacg-tgggggcttgatg 219  Q
    ||||| |||||||  || |||||||||||||||||||||| |||||||||||||    
T  78449 gagggcttgatgccctgtgagcctatttacgctcaatacgttgggggcttgatg 78502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0737
Description:

Target: scaffold0737; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 1899 - 1931
Alignment:
Q  15 agatgaaggatgatgttccaatttattggattt 47  Q
    ||||||||||||||||||||| |||||||||||    
T  1899 agatgaaggatgatgttccaaattattggattt 1931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 219
Target Start/End: Original strand, 6786 - 6838
Alignment:
Q  168 agggattgatgctatgagagcctatttacgctcaatacg-tgggggcttgatg 219  Q
    |||| |||||||  || |||||||||||||||||||||| |||||||||||||    
T  6786 agggcttgatgccctgtgagcctatttacgctcaatacgttgggggcttgatg 6838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 60817 - 60880
Alignment:
Q  15 agatgaaggatgatgttccaatttattggatttgtattaagaagttaatgttctaaaatgttaag 79  Q
    ||||||| ||||||||||||| ||||||||||| || ||||| ||  ||||||||| ||||||||    
T  60817 agatgaaagatgatgttccaaattattggatttata-taagaggtcgatgttctaagatgttaag 60880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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