View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_553 (Length: 234)
Name: NF10145A_low_553
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_553 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 37529912 - 37529703
Alignment:
| Q |
15 |
acatcaactcaaatcactatgatatgtccattgtccaacaaacaacgaaggtaaattcaaggctttaggcattgttgcaagtacaagttcattttcatac |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37529912 |
acatcaactcaaatcactatgatatgtccattgtccaacaaacaacgaaggtaaattcaaggctttaggcattgttgcaagtacaagttcattttcatac |
37529813 |
T |
|
| Q |
115 |
ttcgatagctagtaaataaaatgttttgcttaacnnnnnnntattgtagatgatagacttgtttaaaaaataaaataagggttaaccaaagctatttagc |
214 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
37529812 |
ttcgatagctagtaaataaaatgttttgcttaacaaaaaaatattgtagatgatagacttgtttaaaaaaaaaaataagggttaaccaaagctatttagc |
37529713 |
T |
|
| Q |
215 |
tattttcttg |
224 |
Q |
| |
|
|||||||||| |
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|
| T |
37529712 |
tattttcttg |
37529703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 37591992 - 37591783
Alignment:
| Q |
15 |
acatcaactcaaatcactatgatatgtccattgtccaacaaacaacgaaggtaaattcaaggctttaggcattgttgcaagtacaagttcattttcatac |
114 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37591992 |
acatcaactcaaatcactatgatatgtccattgtccaacaaacaacgaaggtaaattcaaggctttaggcattgttgcaagtacaagttcattttcatac |
37591893 |
T |
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| Q |
115 |
ttcgatagctagtaaataaaatgttttgcttaacnnnnnnntattgtagatgatagacttgtttaaaaaataaaataagggttaaccaaagctatttagc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
37591892 |
ttcgatagctagtaaataaaatgttttgcttaacaaaaaaatattgtagatgatagacttgtttaaaaaaaataataagggttaaccaaagctatttagc |
37591793 |
T |
|
| Q |
215 |
tattttcttg |
224 |
Q |
| |
|
|||||||||| |
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|
| T |
37591792 |
tattttcttg |
37591783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 37694381 - 37694165
Alignment:
| Q |
15 |
acatcaactcaaatcactatgatatgtccattgtccaacaaacaacgaaggtaaattcaaggctttaggcattgttgcaagtacaagttcattttcatac |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37694381 |
acatcaactcaaatcactatgatatgtccattgtccaacaaacaacgaaggtaaattcaaggctttaggcattgttgcaagtacaagttcattttcatac |
37694282 |
T |
|
| Q |
115 |
ttcgatagctagtaaataaaatgttttgcttaacnnnnnnntattgtagatgatagacttgtttaaaaaata-------aaataagggttaaccaaagct |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
37694281 |
ttcgatagctagtaaataaaatgttttgcttaacaaaaaaatattgtagatgatagacttgtttaaaaaaaaaaaaaataaataagggttaaccaaagct |
37694182 |
T |
|
| Q |
208 |
atttagctattttcttg |
224 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
37694181 |
atttagctattttcttg |
37694165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 37709167 - 37708960
Alignment:
| Q |
15 |
acatcaactcaaatcactatgatatgtccattgtccaacaaacaacgaaggtaaattcaaggctttaggcattgttgcaagtacaagttcattttcatac |
114 |
Q |
| |
|
|||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||| || ||||||| ||||| |||||||||||||||| |
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|
| T |
37709167 |
acatcaactcaaatcattatgatatatcaattgtccaacaaacaacgaaggtaaattcaaggcttgagacattgttaaaagtataagttcattttcatac |
37709068 |
T |
|
| Q |
115 |
ttcgatagctagtaaataaaatgttttgcttaacnnnnnnntattgtagatgatagacttgtttaaaaaataaaataagggttaaccaaagctatttagc |
214 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||| || ||| | |||||||||||||||||||| |
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| T |
37709067 |
ttcgatagctagtaaataaaatgtgttgcttaacaaaaaaaaattgtagataatagacttgtttaaaaaa-aatatatgtgttaaccaaagctatttagc |
37708969 |
T |
|
| Q |
215 |
tattttcttg |
224 |
Q |
| |
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| |||||||| |
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|
| T |
37708968 |
t-ttttcttg |
37708960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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