View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_556 (Length: 233)
Name: NF10145A_low_556
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_556 |
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| [»] chr7 (1 HSPs) |
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| [»] chr5 (4 HSPs) |
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| [»] scaffold0856 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 233
Target Start/End: Complemental strand, 27659636 - 27659415
Alignment:
| Q |
13 |
catcatcaatactaccacaatccaaaacagcatttgaactatcctcaaattttcaattgtgggtgcaattggcacaccaaaactgcacaaaatcactcaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27659636 |
catcatcaatactaccacaatccaaaacagcatttgaactatccacaaattttcaattgtgggtgcaattggcacaccaaaactgcacaaaatcactcaa |
27659537 |
T |
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| Q |
113 |
ttagatcaataataagttatattgcaaacatagtgatttacaagcttattgcatcaaatataatgaagcaaaaacttaag-aaaaaatgtaagcatcaca |
211 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||| | || ||||||||||||||||||| |
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| T |
27659536 |
ttagatcaataataagttatattgcaaacatggtgatttacaagcttattgcatcaaatataatgcagctaaaacatcagaaaaaaatgtaagcatcaca |
27659437 |
T |
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| Q |
212 |
cacaaaaacattaaatataatt |
233 |
Q |
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||||||||||||||||||||| |
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| T |
27659436 |
aacaaaaacattaaatataatt |
27659415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 13 - 233
Target Start/End: Original strand, 37604440 - 37604660
Alignment:
| Q |
13 |
catcatcaatactaccacaatccaaaacagcatttgaactatcctcaaattttcaattgtgggtgcaattggcacaccaaaactgcacaaaatcactcaa |
112 |
Q |
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|||||||||||||||||||||||| || | |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||| || |
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| T |
37604440 |
catcatcaatactaccacaatccacaagaacatttgaactatccataaattttcaattgtgggtgaaattggcacaccaaaactgcacaaaattacttaa |
37604539 |
T |
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| Q |
113 |
ttagatcaataataagttatattgcaaacatagtgatttacaagcttattgcatcaaatataatgaagcaaaaacttaagaaaaaatgtaagcatcacac |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||| || |||||||||||| |
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| T |
37604540 |
ttagatcaataataagttatattgcaaacatagtgatttacaagcttattgcatcaaatataatgtagcaaaaacatcagaaacaacgtaagcatcacaa |
37604639 |
T |
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| Q |
213 |
acaaaaacattaaatataatt |
233 |
Q |
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||||||||||||||||||||| |
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| T |
37604640 |
acaaaaacattaaatataatt |
37604660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 88 - 173
Target Start/End: Complemental strand, 38776697 - 38776612
Alignment:
| Q |
88 |
accaaaactgcacaaaatcactcaattagatcaataataagttatattgcaaacatagtgatttacaagcttattgcatcaaatat |
173 |
Q |
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| T |
38776697 |
accaaaactgcacaaaagaagtcaataagatctataataagttatgttgcaaacatagagatttacaagcttatttcatcgaatat |
38776612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 5743228 - 5743129
Alignment:
| Q |
13 |
catcatcaatactaccacaatccaaaacagcatttgaactatcctcaaattttcaattgtgggtgcaattggcacaccaaaactgcacaaaatcactcaa |
112 |
Q |
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|||||| ||||||||||||||||| || |||||||| || |||| ||| |||||||||||| ||||||| ||| ||||| ||||||||||| |||||| |
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| T |
5743228 |
catcatgaatactaccacaatccacaaaagcatttggaccatccatgaatgttcaattgtgggggcaattgacaccccaaatctgcacaaaataactcaa |
5743129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 33360324 - 33360423
Alignment:
| Q |
13 |
catcatcaatactaccacaatccaaaacagcatttgaactatcctcaaattttcaattgtgggtgcaattggcacaccaaaactgcacaaaatcactcaa |
112 |
Q |
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|||||| ||||||||||| ||||| || |||||||| | ||||| ||| |||||||||||| ||||||| ||| ||||| ||||||||||| |||||| |
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| T |
33360324 |
catcatgaatactaccactatccacaaaagcatttggattatccatgaatgttcaattgtgggggcaattgacaccccaaatctgcacaaaataactcaa |
33360423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0856 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0856
Description:
Target: scaffold0856; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 571 - 670
Alignment:
| Q |
13 |
catcatcaatactaccacaatccaaaacagcatttgaactatcctcaaattttcaattgtgggtgcaattggcacaccaaaactgcacaaaatcactcaa |
112 |
Q |
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|||||| ||||||||||| ||||| || |||||||| | ||||| ||| |||||||||||| ||||||| ||| ||||| ||||||||||| |||||| |
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| T |
571 |
catcatgaatactaccactatccacaaaagcatttggattatccatgaatgttcaattgtgggggcaattgacaccccaaatctgcacaaaataactcaa |
670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 18084600 - 18084699
Alignment:
| Q |
13 |
catcatcaatactaccacaatccaaaacagcatttgaactatcctcaaattttcaattgtgggtgcaattggcacaccaaaactgcacaaaatcactcaa |
112 |
Q |
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|||||| ||||||||||| ||||| || |||||||| | ||||| ||| |||||||||||| ||||||| ||| ||||| ||||||||||| |||||| |
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| T |
18084600 |
catcatgaatactaccactatccacaaaagcatttggattatccatgaatgttcaattgtgggggcaattgacaccccaaatctgcacaaaataactcaa |
18084699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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