View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_557 (Length: 233)
Name: NF10145A_low_557
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_557 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 5 - 233
Target Start/End: Original strand, 10289724 - 10289953
Alignment:
| Q |
5 |
atcagaaagagttcgaaaaaatattcacactgcattgaaaa-aatattattggtcgatataattgcgtgtgaagtaaaaacataataaaacaacattaac |
103 |
Q |
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| T |
10289724 |
atcagaaagagttcgaaaaaatattcacactgcattgaaaaaaatattattggtcgatataattgcgtgtgaagtaaaaacataataaaacaacattaac |
10289823 |
T |
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| Q |
104 |
cacctttttcttgaatcaaaactatggtatcattgctcaatgcttgaaacttaagaattttattgtaccatttaaaccagatctgatgtctttgaaaact |
203 |
Q |
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| T |
10289824 |
cacctttttcttgaatcaaaactatggtatcattgctcaatgcttgaaacttaagaattttattgtaccatttaaaccagatctgatgtctttgaaaact |
10289923 |
T |
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| Q |
204 |
ttgtggcacaacagtatcgtttcttgctga |
233 |
Q |
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| T |
10289924 |
ttgtggcacaacagtattgtttcttgctga |
10289953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 39 - 221
Target Start/End: Complemental strand, 9747748 - 9747568
Alignment:
| Q |
39 |
ttgaaaaaatattattggtcgatataattgcgtgtgaagtaaaaacataataaaacaacattaaccacctttttcttgaatcaaaactatggtatcattg |
138 |
Q |
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| T |
9747748 |
ttgaaaaaagattatttgtcgataaaattgcacatgaagtaagaacataataaaacaacattaaccggctttt-cttaaatcaaaactatggtatcattg |
9747650 |
T |
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| Q |
139 |
ctcaatgcttgaaacttaagaattttattgtaccatttaaaccagatctgatgtctttgaaaactttgtggcacaacagtatc |
221 |
Q |
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| T |
9747649 |
ctcaatgcttgaaacttaagaattctatcgtaccatttagaccagagctgatgtctcggaaaac-ttgtggcacagcagtatc |
9747568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 10297883 - 10298086
Alignment:
| Q |
7 |
cagaaagagttcgaaaaaatattcacactgcattgaaaaaat-attattggtcgatataattgcgtgtgaagtaaaaacataataaaacaacattaacca |
105 |
Q |
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| T |
10297883 |
cagaaagagttcgaaaaaaagttca----gcattgaaaaaaagattattcaccaatataattgcacgggaagtaaaagcataataaaacaacattaaccg |
10297978 |
T |
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| Q |
106 |
cctttttcttgaatcaaaactatggtatcattgctcaatgcttgaaacttaagaattttattgtaccatttaaaccagatctgatgtctttgaaaacttt |
205 |
Q |
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| T |
10297979 |
ccttttt-ttgtatcaaaactatggtatgaat--------------acttaagaattttattgtaccatttaaaccagagctgatgtctctgaaaac-tt |
10298062 |
T |
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| Q |
206 |
gtggcacaacagtatcgtttcttg |
229 |
Q |
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| T |
10298063 |
gtggcacaacagtatcgtctcttg |
10298086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 111 - 194
Target Start/End: Original strand, 34694209 - 34694292
Alignment:
| Q |
111 |
ttcttgaatcaaaactatggtatcattgctcaatgcttgaaacttaagaattttattgtaccatttaaaccagatctgatgtct |
194 |
Q |
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| T |
34694209 |
ttcttgaatcaaaactatagtatcattgctcaatgcttgaaacttaaaaattctatcctaccatttaaaccagagctgatgtct |
34694292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 111 - 194
Target Start/End: Original strand, 34716621 - 34716704
Alignment:
| Q |
111 |
ttcttgaatcaaaactatggtatcattgctcaatgcttgaaacttaagaattttattgtaccatttaaaccagatctgatgtct |
194 |
Q |
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| T |
34716621 |
ttcttgaatcaaaactatagtatcattgctcaatgcttgaaacttaaaaattctatcctaccatttaaaccagagctgatgtct |
34716704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 109 - 221
Target Start/End: Complemental strand, 37744192 - 37744082
Alignment:
| Q |
109 |
ttttcttgaatcaaaactatggtatcattgctcaatgcttgaaacttaagaattttattgtaccatttaaaccagatctgatgtctttgaaaactttgtg |
208 |
Q |
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| T |
37744192 |
ttttcttaaatcaaaactaaagtatcattgctcaatgcttgaaacttaaaaattctatcctaccatttaaaccagagttgatttctcggaaa--cttgtg |
37744095 |
T |
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| Q |
209 |
gcacaacagtatc |
221 |
Q |
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| T |
37744094 |
gcacaacagtatc |
37744082 |
T |
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