View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_558 (Length: 233)
Name: NF10145A_low_558
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_558 |
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| [»] chr6 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 8 - 233
Target Start/End: Original strand, 22208605 - 22208830
Alignment:
| Q |
8 |
tgagatgaagtgtaaggacaagagaaacggaaaataagaccattatcagcacaatatttatgaaacaatgtattgttgtattcacgcccattatcacatt |
107 |
Q |
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| T |
22208605 |
tgagatgaagtgtgaggacaagagaaacagaaaataagaccattatcagtacaatatttatgaaacaatgtattgttgtattcacacccattatcacatt |
22208704 |
T |
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| Q |
108 |
gaaaacatttgacagtttgggaaaattgtgtgcgaatttgattagaaagtgtagtgaacatttcaaaaacttgagatttgtgacttatagggaacgtcca |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
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| T |
22208705 |
gaaaacatttgacagtttgggaaaattgtgtgcgaatttgattagaaagtgtagtgaacatttcaaaaacttgagatttgtaacttatagggaacatcca |
22208804 |
T |
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| Q |
208 |
caaaaaatcagaataatcatccaaaa |
233 |
Q |
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||||| |||||||||||||||||||| |
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| T |
22208805 |
caaaatatcagaataatcatccaaaa |
22208830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 8 - 233
Target Start/End: Complemental strand, 23582145 - 23581920
Alignment:
| Q |
8 |
tgagatgaagtgtaaggacaagagaaacggaaaataagaccattatcagcacaatatttatgaaacaatgtattgttgtattcacgcccattatcacatt |
107 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
23582145 |
tgagatgaagtgtgaggacaagagaaacggaaaataagaccattatcaacacaatatttatgaaacaatgtattgttgtattcacgccctttatcacatt |
23582046 |
T |
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| Q |
108 |
gaaaacatttgacagtttgggaaaattgtgtgcgaatttgattagaaagtgtagtgaacatttcaaaaacttgagatttgtgacttatagggaacgtcca |
207 |
Q |
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| T |
23582045 |
gaaaacatttgatagtttgcgaaaattgtgtgtgaatttgattagaaagtgtagtaaacatttcaaaaacttgagatttgtgatttatagggaacgtcca |
23581946 |
T |
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| Q |
208 |
caaaaaatcagaataatcatccaaaa |
233 |
Q |
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|||||||||| |||||||||| |||| |
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| T |
23581945 |
caaaaaatcataataatcatcaaaaa |
23581920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 8 - 233
Target Start/End: Original strand, 48101641 - 48101866
Alignment:
| Q |
8 |
tgagatgaagtgtaaggacaagagaaacggaaaataagaccattatcagcacaatatttatgaaacaatgtattgttgtattcacgcccattatcacatt |
107 |
Q |
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||||||||||| | |||||||||||||||||||| ||||||||||||| ||||||| |||||||| ||||||| || |||||||||||||||||||||| |
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| T |
48101641 |
tgagatgaagtatgaggacaagagaaacggaaaacaagaccattatcatcacaatacttatgaaatgatgtattattatattcacgcccattatcacatt |
48101740 |
T |
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| Q |
108 |
gaaaacatttgacagtttgggaaaattgtgtgcgaatttgattagaaagtgtagtgaacatttcaaaaacttgagatttgtgacttatagggaacgtcca |
207 |
Q |
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| T |
48101741 |
gaaaacatttgacagtttgagaaaattgtgtgtgaatttgattggaaagtaatgtgaacatttcaaaaacttgtgatttgttacttatagggaatgtcca |
48101840 |
T |
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| Q |
208 |
caaaaaatcagaataatcatccaaaa |
233 |
Q |
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|||||||||||||||||||||||||| |
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| T |
48101841 |
caaaaaatcagaataatcatccaaaa |
48101866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 8 - 233
Target Start/End: Original strand, 9934359 - 9934584
Alignment:
| Q |
8 |
tgagatgaagtgtaaggacaagagaaacggaaaataagaccattatcagcacaatatttatgaaacaatgtattgttgtattcacgcccattatcacatt |
107 |
Q |
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||||||||||| | |||||||||||||||||||| ||||||||||||| ||||||| |||||||| ||||||| || |||||||||||||||||||||| |
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| T |
9934359 |
tgagatgaagtatgaggacaagagaaacggaaaacaagaccattatcatcacaatacttatgaaatgatgtattattatattcacgcccattatcacatt |
9934458 |
T |
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| Q |
108 |
gaaaacatttgacagtttgggaaaattgtgtgcgaatttgattagaaagtgtagtgaacatttcaaaaacttgagatttgtgacttatagggaacgtcca |
207 |
Q |
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||||||||||||||||||| |||||||||||| |||||||||| |||||| |||||||||||||||||||| ||||||| |||||||||||| ||||| |
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| T |
9934459 |
gaaaacatttgacagtttgagaaaattgtgtgtgaatttgattggaaagtaatgtgaacatttcaaaaacttgtgatttgttacttatagggaatgtcca |
9934558 |
T |
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| Q |
208 |
caaaaaatcagaataatcatccaaaa |
233 |
Q |
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|||||||||||||||||||||||||| |
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| T |
9934559 |
caaaaaatcagaataatcatccaaaa |
9934584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 10 - 231
Target Start/End: Complemental strand, 4703925 - 4703704
Alignment:
| Q |
10 |
agatgaagtgtaaggacaagagaaacggaaaataagaccattatcagcacaatatttatgaaacaatgtattgttgtattcacgcccattatcacattga |
109 |
Q |
| |
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|||||| |||| ||| ||||||||||| |||||||||| | ||||| |||||||||||||||| | || ||| || |||||| |||||||||||||| || |
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| T |
4703925 |
agatgatgtgtgagggcaagagaaacgaaaaataagacaagtatcaacacaatatttatgaaatagtgaattattatattcatgcccattatcacatcga |
4703826 |
T |
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| Q |
110 |
aaacatttgacagtttgggaaaattgtgtgcgaatttgattagaaagtgtagtgaacatttcaaaaacttgagatttgtgacttatagggaacgtccaca |
209 |
Q |
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|||||||| ||| |||| ||||||||||| |||||||||| ||||||| | | |||||||||||||||| ||| | | |||| ||| || ||||||| |
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| T |
4703825 |
aaacatttaacaatttgagaaaattgtgtatgaatttgattggaaagtgaaattaacatttcaaaaacttaagactccttgcttacaggaaatgtccaca |
4703726 |
T |
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| Q |
210 |
aaaaatcagaataatcatccaa |
231 |
Q |
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|||||||||||||||||||||| |
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| T |
4703725 |
aaaaatcagaataatcatccaa |
4703704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Original strand, 9992248 - 9992282
Alignment:
| Q |
38 |
aaaataagaccattatcagcacaatatttatgaaa |
72 |
Q |
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|||||||||||||||||||||||||||| |||||| |
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| T |
9992248 |
aaaataagaccattatcagcacaatattaatgaaa |
9992282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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