View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_559 (Length: 233)
Name: NF10145A_low_559
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_559 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 1928855 - 1929059
Alignment:
| Q |
17 |
catcactcaccaaaattaagaccaaaagtggaagcttggccgtcgatttagacaatatttcaagtgctcccttagcaatatcaagtaattcatgatcaac |
116 |
Q |
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| T |
1928855 |
catcaccctccaaaattaagaccaaaagtggaagcttggccgtcgatttagacaatatttcaagtgctcccttagcaatatcaagtaattcatgatcaac |
1928954 |
T |
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| Q |
117 |
aaaaaggattttcgcgtcggaatgctttaacaacaatgaaaccatcgatgaatcatgacgagtattcaaggtacatagaacagcccctgacattggaaca |
216 |
Q |
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| T |
1928955 |
aaaaaggatttttgcgtcggaatgctttaacagcaacgaaaccatcgatgaatcatgacgagtattcaaggtacatagaacagcccctgacattggaaca |
1929054 |
T |
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| Q |
217 |
ccaaa |
221 |
Q |
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| T |
1929055 |
ccaaa |
1929059 |
T |
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Target: chr5; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 26 - 221
Target Start/End: Original strand, 1946976 - 1947171
Alignment:
| Q |
26 |
ccaaaattaagaccaaaagtggaagcttggccgtcgatttagacaatatttcaagtgctcccttagcaatatcaagtaattcatgatcaacaaaaaggat |
125 |
Q |
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|||||||||||||||| | ||||||||||| || ||||| || | ||||||||||| ||||| |||||||||| ||||| ||||||||||||||| || |
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| T |
1946976 |
ccaaaattaagaccaagattggaagcttggtggttgattttgaaaggatttcaagtgcacccttggcaatatcaaataattgatgatcaacaaaaagaat |
1947075 |
T |
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| Q |
126 |
tttcgcgtcggaatgctttaacaacaatgaaaccatcgatgaatcatgacgagtattcaaggtacatagaacagcccctgacattggaacaccaaa |
221 |
Q |
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| T |
1947076 |
tttggcatcacaatgattcaataacaatgaaaccattgatgaatcttggtgagtattgagggtgcagagaacagctcctgacattggaacagcaaa |
1947171 |
T |
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