View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_56 (Length: 415)
Name: NF10145A_low_56
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_56 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 8 - 415
Target Start/End: Complemental strand, 7684538 - 7684131
Alignment:
| Q |
8 |
ggctggtgatggtcaagttcagatgttctcggctaaatacaaagttgggctatgtttggaagcagagggagtgttgtgtgtattaaggagctatatgtgg |
107 |
Q |
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| T |
7684538 |
ggctggtgatggtcaagttcagatgttctcggctaaatacaaagttgggctatgtttggaagcagagggagtgttgtgtgtattaaggagctatatgtgg |
7684439 |
T |
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| Q |
108 |
ttaattttaaattatttcaagctggcagcaacaggaggcaatggctttagcaggagcctgcaatctaggcaatccatggggaaaagctttagtttcaata |
207 |
Q |
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| T |
7684438 |
ttaattttaaattatttcaagctggcagcaacaggaggcaatggctttagcaggagcctgcaatctaggcaatccatggggaaaagctttagtttcaata |
7684339 |
T |
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| Q |
208 |
gtggaattttggtagcaagtgctttgatttgagatcctattcgagctgatttaaggagcacaattgattaagaaattcaagtagcggtgttattcctttc |
307 |
Q |
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| T |
7684338 |
gttgaattttggtagcaagtgctttgatttgagatcctattcgagctgatttaaggagcacaattgattaagaaattcaagtagcggtgttattcctttc |
7684239 |
T |
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| Q |
308 |
atgcatcgaggaatagggtgctcattagttgcgtggtatcggattgtgtatttagagattccttggtcgtatcttaagatcctagcccgtttggttccgg |
407 |
Q |
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| T |
7684238 |
atgcatcgaggaatagggtgctcattagttgcgtggtatcggattgtgtatttagagattccttggtcgtatcccaagatcctagcccgtttggttccgg |
7684139 |
T |
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| Q |
408 |
gcagttga |
415 |
Q |
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| T |
7684138 |
gtagttga |
7684131 |
T |
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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 226 - 381
Target Start/End: Original strand, 25812213 - 25812365
Alignment:
| Q |
226 |
gtgctttgatttgagatcctattcgagctgatttaaggagcacaattgattaagaaattcaagtagcggtgttattcctttcatgcatcgaggaataggg |
325 |
Q |
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| T |
25812213 |
gtgcattgatttgaggacatatttgagctgatctaaggcgcacaaatgattaagaaatacaagtcgtggt---aatcctttcatgtatagaggaatcaag |
25812309 |
T |
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| Q |
326 |
tgctcattagttgcgtggtatcggattgtgtatttagagattccttggtcgtatct |
381 |
Q |
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| T |
25812310 |
tgctctttagttgtgtgttatcggattgtgtattaagagatttcttggtcatatct |
25812365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 166 - 241
Target Start/End: Original strand, 7426108 - 7426185
Alignment:
| Q |
166 |
tgcaatctaggcaatccatggggaaaagctttagtttcaatagtgg-aattttggtagcaa-gtgctttgatttgaga |
241 |
Q |
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| T |
7426108 |
tgcaatcttggcaaaccatggggaaaagctttagcttcaagagtggaaatattggtagcaatgtgcattgatctgaga |
7426185 |
T |
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