View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_560 (Length: 233)

Name: NF10145A_low_560
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_560
NF10145A_low_560
[»] chr3 (8 HSPs)
chr3 (2-233)||(823200-823431)
chr3 (128-229)||(13018094-13018195)
chr3 (2-67)||(1652818-1652883)
chr3 (162-214)||(25647930-25647982)
chr3 (153-232)||(25594313-25594392)
chr3 (2-54)||(27399043-27399095)
chr3 (162-232)||(14194177-14194247)
chr3 (162-214)||(33143733-33143787)
[»] chr7 (8 HSPs)
chr7 (19-233)||(40292811-40293025)
chr7 (156-214)||(22567912-22567970)
chr7 (153-232)||(23983441-23983521)
chr7 (155-223)||(36449314-36449382)
chr7 (3-54)||(3478437-3478488)
chr7 (170-232)||(28534293-28534355)
chr7 (2-47)||(9428057-9428102)
chr7 (153-232)||(9427884-9427964)
[»] chr5 (4 HSPs)
chr5 (7-232)||(17853836-17854058)
chr5 (2-65)||(39184119-39184182)
chr5 (156-214)||(39183986-39184044)
chr5 (159-232)||(8731143-8731216)
[»] chr1 (5 HSPs)
chr1 (8-89)||(16577351-16577432)
chr1 (153-229)||(38548844-38548920)
chr1 (156-214)||(42374386-42374444)
chr1 (171-215)||(2877923-2877967)
chr1 (2-54)||(4651863-4651915)
[»] chr2 (19 HSPs)
chr2 (2-54)||(22885078-22885130)
chr2 (2-54)||(27740059-27740111)
chr2 (2-54)||(33788577-33788629)
chr2 (3-86)||(10173490-10173573)
chr2 (2-89)||(16952292-16952379)
chr2 (2-89)||(17022957-17023044)
chr2 (2-89)||(17060263-17060350)
chr2 (159-217)||(1946011-1946069)
chr2 (157-214)||(22884934-22884991)
chr2 (156-232)||(13699068-13699144)
chr2 (9-89)||(34230292-34230372)
chr2 (170-213)||(15457214-15457257)
chr2 (2-65)||(43816390-43816453)
chr2 (154-188)||(20572308-20572342)
chr2 (160-214)||(43816257-43816311)
chr2 (159-232)||(25504691-25504764)
chr2 (155-223)||(27879926-27879995)
chr2 (33-89)||(7696077-7696133)
chr2 (2-30)||(16960066-16960094)
[»] chr4 (6 HSPs)
chr4 (159-217)||(23440203-23440262)
chr4 (153-214)||(20632268-20632329)
chr4 (9-86)||(41117880-41117957)
chr4 (153-232)||(12296395-12296475)
chr4 (3-89)||(19815130-19815216)
chr4 (2-54)||(35800573-35800625)
[»] chr8 (3 HSPs)
chr8 (9-65)||(15906778-15906834)
chr8 (2-65)||(17720640-17720703)
chr8 (159-218)||(17819587-17819644)
[»] chr6 (2 HSPs)
chr6 (153-215)||(5746834-5746895)
chr6 (9-89)||(20701713-20701793)


Alignment Details
Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 2 - 233
Target Start/End: Complemental strand, 823431 - 823200
Alignment:
Q  2 tttggtgttctttcggtggaccagaggttaagaggtggcggaagctgaatgattttttgaataggacatttccggatgtggctcaactatggaaataaag 101  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||| |||||||||||| | |||||||||||| ||||| ||||| |    
T  823431 tttggtgttctttcggtagaccagaggttgagaggtggcggaagctgaatgatcttttcaataggacattttcagatgtggctcaattatggtaataagg 823332  T
Q  102 acaaggtgcttgaaatagagaggtgtttcttttagggtgagtaaaggcggagggtggttatggatatcgtttttcagtggttgttttgtgatggagtttg 201  Q
    ||| |||| ||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  823331 acatggtgtttgaattagagaggtgtttcttttagggtgagtagaggcgaagggtggttatggatatcgtttttcagtggttgttttgtgatggagtttg 823232  T
Q  202 ttttaggtggtgaagttaatttaggtgggtga 233  Q
    |||||||||||||||||||||| |||||||||    
T  823231 ttttaggtggtgaagttaattttggtgggtga 823200  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 128 - 229
Target Start/End: Complemental strand, 13018195 - 13018094
Alignment:
Q  128 ttcttttagggtgagtaaaggcggagggtggttatggatatcgtttttcagtggttgttttgtgatggagtttgttttaggtggtgaagttaatttaggt 227  Q
    |||||||||||||||||  |||   ||||| | ||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||    
T  13018195 ttcttttagggtgagtagtggcaatgggtgatcatggatatcattttttagtggttgttttgtgatggagtctgttttaggtggtgaagttaattttggt 13018096  T
Q  228 gg 229  Q
    ||    
T  13018095 gg 13018094  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 1652883 - 1652818
Alignment:
Q  2 tttggtgttctttcggtggaccagaggttaagaggtggcggaagctgaatgattttttgaatagga 67  Q
    |||||||||||||||||||||| ||||||||| ||||||||||| |||||||| ||| ||| ||||    
T  1652883 tttggtgttctttcggtggaccggaggttaagcggtggcggaagttgaatgatctttagaaaagga 1652818  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 25647930 - 25647982
Alignment:
Q  162 tggatatcgtttttcagtggttgttttgtgatggagtttgttttaggtggtga 214  Q
    ||||||||||||||||||||| |||| |||||||||| ||||||| |||||||    
T  25647930 tggatatcgtttttcagtggtggtttcgtgatggagtatgttttatgtggtga 25647982  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 232
Target Start/End: Complemental strand, 25594392 - 25594313
Alignment:
Q  153 gggtggttatggatatcgttttt-cagtggttgttttgtgatggagtttgttttaggtggtgaagttaatttaggtgggtg 232  Q
    |||||||| |||||||||||||| ||||||| ||||||||| ||||| |||||||||| |||| ||| |||  ||||||||    
T  25594392 gggtggtt-tggatatcgttttttcagtggtcgttttgtgaaggagtatgttttaggtagtgatgtttattgtggtgggtg 25594313  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 27399043 - 27399095
Alignment:
Q  2 tttggtgttctttcggtggaccagaggttaagaggtggcggaagctgaatgat 54  Q
    ||||||||||||| ||||||||||||||| |||||||| ||  ||||||||||    
T  27399043 tttggtgttcttttggtggaccagaggttgagaggtggtggttgctgaatgat 27399095  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 232
Target Start/End: Original strand, 14194177 - 14194247
Alignment:
Q  162 tggatatcgtttttcagtggttgttttgtgatggagtttgttttaggtggtgaagttaatttaggtgggtg 232  Q
    ||||||||||| ||||||||   ||| |||||||||| ||||||||||||||| ||  |||| ||||||||    
T  14194177 tggatatcgttattcagtggcgatttcgtgatggagtctgttttaggtggtgacgtgtattttggtgggtg 14194247  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 33143787 - 33143733
Alignment:
Q  162 tggatatcgttt-ttcagtggttgtttt-gtgatggagtttgttttaggtggtga 214  Q
    |||||||||||| ||||||||| ||||| |||| |||||||||||||||||||||    
T  33143787 tggatatcgtttgttcagtggtggttttcgtgaaggagtttgttttaggtggtga 33143733  T

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Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 233
Target Start/End: Complemental strand, 40293025 - 40292811
Alignment:
Q  19 ggaccagaggttaagaggtggcggaagctgaatgattttttgaataggacatttccggatgtggctcaactatggaaataaagacaaggtgcttgaaata 118  Q
    ||||| || ||| |||||||||||||||||||| || |||| |||| |||| || |||||| |||||| |||||| ||| | ||||||||| ||||| ||    
T  40293025 ggaccggatgttgagaggtggcggaagctgaataatcttttcaataagacaatttcggatgcggctcagctatggtaatgaggacaaggtgtttgaatta 40292926  T
Q  119 gagaggtgtttcttttagggtgagtaaaggcggagggtggttatggatatcg-tttttcagtggttgttttgtgatggagtttgttttaggtggtgaagt 217  Q
     |  |||| ||||||||||||||||| |||||  | |||||||||||||||| ||||||| |||||||||||||||| ||| ||||||||| | ||||||    
T  40292925 taagggtg-ttcttttagggtgagtagaggcgatgagtggttatggatatcgttttttcaatggttgttttgtgatgaagtctgttttaggcgatgaagt 40292827  T
Q  218 taatttaggtgggtga 233  Q
    |||||| |||| ||||    
T  40292826 taattttggtgtgtga 40292811  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 156 - 214
Target Start/End: Complemental strand, 22567970 - 22567912
Alignment:
Q  156 tggttatggatatcgtttttcagtggttgttttgtgatggagtttgttttaggtggtga 214  Q
    |||||||||||| ||||||||||||||||||| ||||  |||| |||||||||||||||    
T  22567970 tggttatggataccgtttttcagtggttgtttcgtgaaagagtctgttttaggtggtga 22567912  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 232
Target Start/End: Original strand, 23983441 - 23983521
Alignment:
Q  153 gggtggttatggatatcgtttttcagtggttgtttt-gtgatggagtttgttttaggtggtgaagttaatttaggtgggtg 232  Q
    |||| |||||| |||||||||||||||||||||||| ||||  |||| ||||||||||||||  ||| |||| ||||||||    
T  23983441 gggtagttatgtatatcgtttttcagtggttgttttcgtgaatgagtctgttttaggtggtggtgtttattttggtgggtg 23983521  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 36449314 - 36449382
Alignment:
Q  155 gtggttatggatatcgtttttcagtggttgttttgtgatggagtttgttttaggtggtgaagttaattt 223  Q
    |||||||||||||||||||||||| |||||||| |||| | ||| | ||||||||||||| ||| ||||    
T  36449314 gtggttatggatatcgtttttcagcggttgtttcgtgaagtagtctattttaggtggtgatgtttattt 36449382  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 3478437 - 3478488
Alignment:
Q  3 ttggtgttctttcggtggaccagaggttaagaggtggcggaagctgaatgat 54  Q
    ||||||||||||||||||| | ||| |  |||||||||||||||||||||||    
T  3478437 ttggtgttctttcggtggatcggagatcgagaggtggcggaagctgaatgat 3478488  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 28534355 - 28534293
Alignment:
Q  170 gtttttcagtggttgttttgtgatggagtttgttttaggtggtgaagttaatttaggtgggtg 232  Q
    ||||||||||||| |||| ||||  |||| ||||||||||||||| ||| |||| ||||||||    
T  28534355 gtttttcagtggtcgtttcgtgaaagagtctgttttaggtggtgatgtttattttggtgggtg 28534293  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 9428102 - 9428057
Alignment:
Q  2 tttggtgttctttcggtggaccagaggttaagaggtggcggaagct 47  Q
    |||||||||||||||||||||||||||||  || |||| |||||||    
T  9428102 tttggtgttctttcggtggaccagaggttgtgaagtggtggaagct 9428057  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 232
Target Start/End: Complemental strand, 9427964 - 9427884
Alignment:
Q  153 gggtggttatggatatcgtttttcagtggttgt-tttgtgatggagtttgttttaggtggtgaagttaatttaggtgggtg 232  Q
    ||||||||||||||||| ||||| ||||||||| || ||||  || |||||||||||| |||| ||| |||| ||| ||||    
T  9427964 gggtggttatggatatcattttttagtggttgtcttcgtgaaagaatttgttttaggtagtgatgtttattttggtaggtg 9427884  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 7 - 232
Target Start/End: Complemental strand, 17854058 - 17853836
Alignment:
Q  7 tgttctttcggtggaccagaggttaagaggtggcggaagctgaatgattttttgaataggacatttccggatgtggctcaactatggaaataaagacaag 106  Q
    ||||||||||||||||| || ||| |||||||| ||||| |||||||| ||| ||||| ||| ||| ||||||||||||| ||||||  || | ||   |    
T  17854058 tgttctttcggtggacctgaagttgagaggtggtggaagttgaatgatctttagaatatgac-ttttcggatgtggctcagctatggtgatgagga-ttg 17853961  T
Q  107 gtgcttgaaatagagaggtgt-ttcttttagggtgagtaaaggcggagggtggttatggatatcgtttttcagtggttgttttgtgatggagtttgtttt 205  Q
    ||| ||   ||  |||||||| | ||||| |||||||||  || |  |||||||||||||||||||||||||||| | |||| || | ||||| ||||||    
T  17853960 gtgttt--catttagaggtgtctacttttggggtgagtagtggtgatgggtggttatggatatcgtttttcagtgatcgtttcgtaaaggagtctgtttt 17853863  T
Q  206 aggtggtgaagttaatttaggtgggtg 232  Q
    ||  ||||| ||| |||| ||||||||    
T  17853862 agaaggtgatgtttattttggtgggtg 17853836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 2 - 65
Target Start/End: Complemental strand, 39184182 - 39184119
Alignment:
Q  2 tttggtgttctttcggtggaccagaggttaagaggtggcggaagctgaatgattttttgaatag 65  Q
    |||||||||||||||||||||||||||||  ||||| | ||||||||| |||| ||||||||||    
T  39184182 tttggtgttctttcggtggaccagaggttgtgaggtagtggaagctgattgatcttttgaatag 39184119  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 156 - 214
Target Start/End: Complemental strand, 39184044 - 39183986
Alignment:
Q  156 tggttatggatatcgtttttcagtggttgttttgtgatggagtttgttttaggtggtga 214  Q
    |||||||||||| |||||||||||||| |||| ||||| |||| |||||||||||||||    
T  39184044 tggttatggataccgtttttcagtggtcgtttcgtgatagagtctgttttaggtggtga 39183986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 232
Target Start/End: Original strand, 8731143 - 8731216
Alignment:
Q  159 ttatggatatcgtttttcagtggttgttttgtgatggagtttgttttaggtggtgaagttaatttaggtgggtg 232  Q
    |||| |||| |||||||||||||| |||| ||||  || | ||||||||||||||| ||| |||| ||||||||    
T  8731143 ttattgataccgtttttcagtggtcgtttcgtgaaagactctgttttaggtggtgatgtttattttggtgggtg 8731216  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 16577351 - 16577432
Alignment:
Q  8 gttctttcggtggaccagaggttaagaggtggcggaagctgaatgattttttgaataggacatttccggatgtggctcaact 89  Q
    ||||||||||| ||   |||||| |||||||| |||||||||||||| ||| ||||||||  ||| ||||||||||||||||    
T  16577351 gttctttcggtagattggaggttgagaggtggtggaagctgaatgatctttggaataggagcttttcggatgtggctcaact 16577432  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 229
Target Start/End: Complemental strand, 38548920 - 38548844
Alignment:
Q  153 gggtggttatggatatcgtttttcagtggttgttttgtgatggagtttgttttaggtggtgaagttaatttaggtgg 229  Q
    ||||||||||| |||||||||||||||| | |||| ||||  |||| ||||||||||||||| ||| |||| |||||    
T  38548920 gggtggttatgaatatcgtttttcagtgatcgtttcgtgaaagagtctgttttaggtggtgatgtttattttggtgg 38548844  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 156 - 214
Target Start/End: Original strand, 42374386 - 42374444
Alignment:
Q  156 tggttatggatatcgtttttcagtggttgttttgtgatggagtttgttttaggtggtga 214  Q
    ||||||||||||  ||||||||||||| |||| |||| ||| |||||||||||||||||    
T  42374386 tggttatggatacagtttttcagtggtcgtttcgtgaaggaatttgttttaggtggtga 42374444  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 2877923 - 2877967
Alignment:
Q  171 tttttcagtggttgttttgtgatggagtttgttttaggtggtgaa 215  Q
    |||||||| |||||||||| ||||||||||| |||||| ||||||    
T  2877923 tttttcagaggttgttttgcgatggagtttgatttaggcggtgaa 2877967  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 4651863 - 4651915
Alignment:
Q  2 tttggtgttctttcggtggaccagaggttaagaggtggcggaagctgaatgat 54  Q
    |||||||||| ||||||||||| ||||||  | ||||| ||||||||||||||    
T  4651863 tttggtgttccttcggtggaccggaggttgcgcggtggtggaagctgaatgat 4651915  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 22885130 - 22885078
Alignment:
Q  2 tttggtgttctttcggtggaccagaggttaagaggtggcggaagctgaatgat 54  Q
    ||||||||||||||||||||||||||||| |||||||| ||||| ||| ||||    
T  22885130 tttggtgttctttcggtggaccagaggttgagaggtggtggaagttgattgat 22885078  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 27740059 - 27740111
Alignment:
Q  2 tttggtgttctttcggtggaccagaggttaagaggtggcggaagctgaatgat 54  Q
    ||||||||||||||||||||||||||||| |||||||| |||| |||| ||||    
T  27740059 tttggtgttctttcggtggaccagaggttgagaggtggtggaaactgattgat 27740111  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 33788629 - 33788577
Alignment:
Q  2 tttggtgttctttcggtggaccagaggttaagaggtggcggaagctgaatgat 54  Q
    |||||||||||||||||| |||||||||| |||||||| ||||||||| ||||    
T  33788629 tttggtgttctttcggtgaaccagaggttgagaggtggtggaagctgattgat 33788577  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 10173573 - 10173490
Alignment:
Q  3 ttggtgttctttcggtggaccagaggttaagaggtggcggaagctgaatgattttttgaataggacatttccggatgtggctca 86  Q
    ||||||||||||||||| | | |||||  |||||||| ||||| |||||||| ||||||||| ||  ||| |||||||||||||    
T  10173573 ttggtgttctttcggtgaatcggaggtcgagaggtggtggaagttgaatgatcttttgaatatgagcttttcggatgtggctca 10173490  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 16952379 - 16952292
Alignment:
Q  2 tttggtgttctttcggtggaccagaggttaagaggtggcggaagctgaatgattttttgaataggacatttccggatgtggctcaact 89  Q
    |||||||||||||||||||| | |||||| |||||||| ||||||| || ||| ||| | ||||||  ||| ||||||||| ||||||    
T  16952379 tttggtgttctttcggtggatcggaggttgagaggtggtggaagctaaacgatctttcggataggagcttttcggatgtggatcaact 16952292  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 17023044 - 17022957
Alignment:
Q  2 tttggtgttctttcggtggaccagaggttaagaggtggcggaagctgaatgattttttgaataggacatttccggatgtggctcaact 89  Q
    |||||||||||||||||||| | |||||| |||||||| ||||||| || ||| ||| | ||||||  ||| ||||||||| ||||||    
T  17023044 tttggtgttctttcggtggatcggaggttgagaggtggtggaagctaaacgatctttcggataggagcttttcggatgtggatcaact 17022957  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 17060350 - 17060263
Alignment:
Q  2 tttggtgttctttcggtggaccagaggttaagaggtggcggaagctgaatgattttttgaataggacatttccggatgtggctcaact 89  Q
    |||||||||||||||||||| | |||||| |||||||| ||||||| || ||| ||| | ||||||  ||| ||||||||| ||||||    
T  17060350 tttggtgttctttcggtggatcggaggttgagaggtggtggaagctaaacgatctttcggataggagcttttcggatgtggatcaact 17060263  T

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Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 1946011 - 1946069
Alignment:
Q  159 ttatggatatcgtttttcagtggttgttttgtgatggagtttgttttaggtggtgaagt 217  Q
    |||||||| |||||||| |||||  ||||| |||||||||||| |||||||||||||||    
T  1946011 ttatggatttcgttttttagtggccgttttatgatggagtttgatttaggtggtgaagt 1946069  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 214
Target Start/End: Complemental strand, 22884991 - 22884934
Alignment:
Q  157 ggttatggatatcgtttttcagtggttgttttgtgatggagtttgttttaggtggtga 214  Q
    |||||||||| |||||| |||||||| |||| |||| ||||| |||||||||||||||    
T  22884991 ggttatggatttcgtttgtcagtggtcgtttcgtgaaggagtctgttttaggtggtga 22884934  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 232
Target Start/End: Complemental strand, 13699144 - 13699068
Alignment:
Q  156 tggttatggatatcgtttttcagtggttgttttgtgatggagtttgttttaggtggtgaagttaatttaggtgggtg 232  Q
    |||||||| ||| |||||||||||||| |||| || |  |||| ||||||||||||||| ||| |||| ||||||||    
T  13699144 tggttatgtataccgtttttcagtggtcgtttcgtaaaagagtgtgttttaggtggtgatgtttattttggtgggtg 13699068  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 34230292 - 34230372
Alignment:
Q  9 ttctttcggtggaccagaggttaagaggtggcggaagctgaatgattttttgaataggacatttccggatgtggctcaact 89  Q
    ||||||||||||| | |||||| |||||||| |||||||||||||| |||  |||| ||  ||| | ||||||||||||||    
T  34230292 ttctttcggtggatcggaggttgagaggtggtggaagctgaatgatctttcaaataagagcttttcagatgtggctcaact 34230372  T

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Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 213
Target Start/End: Original strand, 15457214 - 15457257
Alignment:
Q  170 gtttttcagtggttgttttgtgatggagtttgttttaggtggtg 213  Q
    |||||||||||||||||| |||| ||| ||||||||||||||||    
T  15457214 gtttttcagtggttgtttcgtgaaggaatttgttttaggtggtg 15457257  T

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Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 65
Target Start/End: Complemental strand, 43816453 - 43816390
Alignment:
Q  2 tttggtgttctttcggtggaccagaggttaagaggtggcggaagctgaatgattttttgaatag 65  Q
    |||||| |||||||||||||||||||||| | |||||| ||| ||||| |||| ||| ||||||    
T  43816453 tttggtattctttcggtggaccagaggtttaaaggtggtggaggctgattgatctttagaatag 43816390  T

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Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 188
Target Start/End: Original strand, 20572308 - 20572342
Alignment:
Q  154 ggtggttatggatatcgtttttcagtggttgtttt 188  Q
    ||||||||||||||||||||||||||||| |||||    
T  20572308 ggtggttatggatatcgtttttcagtggtcgtttt 20572342  T

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Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 214
Target Start/End: Complemental strand, 43816311 - 43816257
Alignment:
Q  160 tatggatatcgtttttcagtggttgttttgtgatggagtttgttttaggtggtga 214  Q
    |||||||| ||||||||||||||||||| ||||  |||| | |||||||||||||    
T  43816311 tatggataccgtttttcagtggttgtttcgtgaaagagtctattttaggtggtga 43816257  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 232
Target Start/End: Complemental strand, 25504764 - 25504691
Alignment:
Q  159 ttatggatatcgtttttcagtggttgttttgtgatggagtttgttttaggtggtgaagttaatttaggtgggtg 232  Q
    |||| |||| |||||||||||||| |||| ||||  || | ||||||||||||||| ||| |||| ||||||||    
T  25504764 ttattgataccgtttttcagtggtcgtttcgtgaaagactctgttttaggtggtgatgtttattttggtgggtg 25504691  T

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Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 223
Target Start/End: Complemental strand, 27879995 - 27879926
Alignment:
Q  155 gtggttatggatatcgtttttcagtggttgtttt-gtgatggagtttgttttaggtggtgaagttaattt 223  Q
    |||||||||||| ||||||||||| ||| |||||  ||| ||||| ||||||||||||||| ||| ||||    
T  27879995 gtggttatggatttcgtttttcagaggtcgttttcctgaaggagtctgttttaggtggtgatgtttattt 27879926  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 89
Target Start/End: Original strand, 7696077 - 7696133
Alignment:
Q  33 gaggtggcggaagctgaatgattttttgaataggacatttccggatgtggctcaact 89  Q
    ||||||| |||||||||||||| ||| | |||||| ||||  |||||||||||||||    
T  7696077 gaggtggtggaagctgaatgatctttcggataggagatttgaggatgtggctcaact 7696133  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 16960066 - 16960094
Alignment:
Q  2 tttggtgttctttcggtggaccagaggtt 30  Q
    |||||||||||||||||||||||||||||    
T  16960066 tttggtgttctttcggtggaccagaggtt 16960094  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 23440262 - 23440203
Alignment:
Q  159 ttatggatatcgtt-tttcagtggttgttttgtgatggagtttgttttaggtggtgaagt 217  Q
    |||||||| ||||| |||||||||| ||||| |||||||||||| |||||||||||||||    
T  23440262 ttatggatttcgttgtttcagtggtcgttttatgatggagtttgatttaggtggtgaagt 23440203  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 214
Target Start/End: Complemental strand, 20632329 - 20632268
Alignment:
Q  153 gggtggttatggatatcgtttttcagtggttgttttgtgatggagtttgttttaggtggtga 214  Q
    |||||||||||  ||||||| |||||||||||||||||||  |||| ||||||||| |||||    
T  20632329 gggtggttatgtgtatcgttcttcagtggttgttttgtgaaagagtctgttttagggggtga 20632268  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 41117957 - 41117880
Alignment:
Q  9 ttctttcggtggaccagaggttaagaggtggcggaagctgaatgattttttgaataggacatttccggatgtggctca 86  Q
    |||||||| |||| |||||||  |||||||| |||||||||||||| ||| ||||||||  ||| |||| ||||||||    
T  41117957 ttctttcgatggatcagaggtcgagaggtggtggaagctgaatgatctttcgaataggagctttgcggaggtggctca 41117880  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 232
Target Start/End: Original strand, 12296395 - 12296475
Alignment:
Q  153 gggtggttatggatatcgtttttcagtggttgttttgtgatggagtttg-ttttaggtggtgaagttaatttaggtgggtg 232  Q
    |||||||||||||||||||||||||||||| | || |  | ||||| || ||||||||||||| ||| |||| ||||||||    
T  12296395 gggtggttatggatatcgtttttcagtggtcgcttcggaaaggagtctgtttttaggtggtgatgtttattttggtgggtg 12296475  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 89
Target Start/End: Complemental strand, 19815216 - 19815130
Alignment:
Q  3 ttggtgttctttcggtggaccagaggttaagaggtggcggaagctgaatgattttttgaataggacatttccggatgtggctcaact 89  Q
    ||||||||||||||||||||| |||||  |||| ||| ||||||| |||||| ||| | ||||||  ||| | ||||||||| ||||    
T  19815216 ttggtgttctttcggtggaccggaggtcgagagatggtggaagctaaatgatctttcggataggaacttttccgatgtggctaaact 19815130  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 35800573 - 35800625
Alignment:
Q  2 tttggtgttctttcggtggaccagaggttaagaggtggcggaagctgaatgat 54  Q
    |||||||||||||||||||||| ||||||  | ||||| |||| |||||||||    
T  35800573 tttggtgttctttcggtggaccggaggtttcgcggtggtggaacctgaatgat 35800625  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 15906778 - 15906834
Alignment:
Q  9 ttctttcggtggaccagaggttaagaggtggcggaagctgaatgattttttgaatag 65  Q
    ||||||| ||||||||||||||||||||||| ||||| ||| |||||| | ||||||    
T  15906778 ttctttcagtggaccagaggttaagaggtggtggaagatgattgatttatagaatag 15906834  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 65
Target Start/End: Complemental strand, 17720703 - 17720640
Alignment:
Q  2 tttggtgttctttcggtggaccagaggttaagaggtggcggaagctgaatgattttttgaatag 65  Q
    |||||||||||||||||||||  |||||| |||||||| ||||| ||| |||| ||| ||||||    
T  17720703 tttggtgttctttcggtggacttgaggttgagaggtggtggaagttgattgatctttagaatag 17720640  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 218
Target Start/End: Complemental strand, 17819644 - 17819587
Alignment:
Q  159 ttatggatatcgtttttcagtggttgttttgtgatggagtttgttttaggtggtgaagtt 218  Q
    |||||||| ||||||| |||||||||||| | ||||||||||| ||||||||||||||||    
T  17819644 ttatggatttcgtttt-cagtggttgttt-gcgatggagtttgatttaggtggtgaagtt 17819587  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 215
Target Start/End: Original strand, 5746834 - 5746895
Alignment:
Q  153 gggtggttatggatatcgtttttcagtggttgttttgtgatggagtttgttttaggtggtgaa 215  Q
    ||||| |||||||| | ||||||||||||||| |||| |||||||| ||||||||| ||||||    
T  5746834 gggtgcttatggatttagtttttcagtggttg-tttgcgatggagtatgttttaggcggtgaa 5746895  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 20701793 - 20701713
Alignment:
Q  9 ttctttcggtggaccagaggttaagaggtggcggaagctgaatgattttttgaataggacatttccggatgtggctcaact 89  Q
    ||||||||||||| | |||||  |||||| | |||||||||||||| ||| | ||||||  ||| || |||||||||||||    
T  20701793 ttctttcggtggatcggaggtcgagaggtagtggaagctgaatgatctttcggataggagcttttcgaatgtggctcaact 20701713  T

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