View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_563 (Length: 232)
Name: NF10145A_low_563
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_563 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 29647514 - 29647283
Alignment:
| Q |
1 |
aaaagctatttactacttgtcaatggtacataaatcatacccttttgctctctctaaagattatgttagtcattaacatagcaccgacacttctgattga |
100 |
Q |
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| T |
29647514 |
aaaagctatttactacttgtcaatggtacataaatcatacccttttgctctctctaaatattatgttagtcattaacatagcaccgacacttctgattga |
29647415 |
T |
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| Q |
101 |
agacgtatctggtgttcgatatgtcttggtatcgtacatcaacatgatactgacgcatgtagttgaactaattacttctattttttcacaatattatatg |
200 |
Q |
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|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
29647414 |
agacgtgtctggtgtttgatatgtcttggtatcgtacatcaacatgatactgacgcatgtagttgaattaagtacttctattttttcacaatattatatg |
29647315 |
T |
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| Q |
201 |
tgcctacatgtctgtgtcgtgtctgatgtcca |
232 |
Q |
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| T |
29647314 |
tgcctacatgtctgtgtcgtgtctggtgtcca |
29647283 |
T |
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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 115
Target Start/End: Original strand, 10970989 - 10971027
Alignment:
| Q |
77 |
catagcaccgacacttctgattgaagacgtatctggtgt |
115 |
Q |
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| T |
10970989 |
catagcaccgacacttctgattgaaggcgtatctggtgt |
10971027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 115
Target Start/End: Original strand, 28045400 - 28045436
Alignment:
| Q |
79 |
tagcaccgacacttctgattgaagacgtatctggtgt |
115 |
Q |
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| T |
28045400 |
tagcaccgacacttctgatggaagacatatctggtgt |
28045436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 115
Target Start/End: Complemental strand, 3451965 - 3451929
Alignment:
| Q |
79 |
tagcaccgacacttctgattgaagacgtatctggtgt |
115 |
Q |
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| T |
3451965 |
tagcaccgacacttgtgattgaagacgtatccggtgt |
3451929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 115
Target Start/End: Complemental strand, 4785081 - 4785045
Alignment:
| Q |
79 |
tagcaccgacacttctgattgaagacgtatctggtgt |
115 |
Q |
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| T |
4785081 |
tagcaccgacacttctgatcgaagacgtgtctggtgt |
4785045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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