View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_564 (Length: 232)
Name: NF10145A_low_564
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_564 |
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Alignment Details
Target: chr7 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 27430418 - 27430584
Alignment:
| Q |
1 |
tgctttgcaaccttgatcatgtttgtgagtgcacctgtaatagttcctgcaaagcatat--aaataaatatatattcccatagtgaaaattaattaattt |
98 |
Q |
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| T |
27430418 |
tgctttgcaaccttgatcatgtttgtgagtgcacctgtaatagttcctgcaaagcatatataaataaatatatattcccatagtgaaaattaattaattt |
27430517 |
T |
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| Q |
99 |
gaaaatcaataattaacatgataatgtgttcaaatagtgaagttagtgcttaattaaactcgtaaaa |
165 |
Q |
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| T |
27430518 |
gaaaatcaataattaacatgataatttgttcaaatagtgaagtttgtgcttaattaaactcgtaaaa |
27430584 |
T |
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Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 27447665 - 27447717
Alignment:
| Q |
1 |
tgctttgcaaccttgatcatgtttgtgagtgcacctgtaatagttcctgcaaa |
53 |
Q |
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| T |
27447665 |
tgctttgcaaccttgatcatttttgtgagtgcatctgtaatagttcctgcaaa |
27447717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 232
Target Start/End: Original strand, 27430594 - 27430645
Alignment:
| Q |
181 |
ccttggaaaatcggtgtgcaagatcnnnnnnngcccatactttctccattga |
232 |
Q |
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| T |
27430594 |
ccttggaaaatcggtgtgcaagatctttttttgcccatactttctccattga |
27430645 |
T |
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