View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10145A_low_565 (Length: 232)
Name: NF10145A_low_565
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_565 |
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| [»] chr3 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 1199751 - 1199982
Alignment:
| Q |
1 |
tgactgccaatcagtttccactaattgcccacgatcttcttcagatatcagatgcgtattataatcccgaaaagcctgttccatctgataaatactcaat |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1199751 |
tgactgccaatcagtttccactagttgcccacgatcttcttcagatatcagatgcgtattataatcccgaaaagcctgttccatctgatatatactcaat |
1199850 |
T |
|
| Q |
101 |
gtgcatggtgcgccaatagcaggatgtctaggaacgttctgaacaaaaccaaattgcctcaacacgcgctctggcaagtgtggacgataacatgacacac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1199851 |
gtgcatggtgcgccaatagcaggatgtctaggaacgttctgaacaaaaccaaattgcctcaacacgcgctctggcaagtgtggacgataacatgacacac |
1199950 |
T |
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| Q |
201 |
cacacattatccaccttgaaaaccaaaggatg |
232 |
Q |
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||||||||||||||| ||||||||||| |||| |
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| T |
1199951 |
cacacattatccaccctgaaaaccaaatgatg |
1199982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 32687563 - 32687794
Alignment:
| Q |
1 |
tgactgccaatcagtttccactaattgcccacgatcttcttcagatatcagatgcgtattataatcccgaaaagcctgttccatctgataaatactcaat |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
32687563 |
tgactgccaatcagtttccactagttgcccacgatcttcttcagatatcagatgcatattataatcctgaaaagcctgttccatctgataaatactcaat |
32687662 |
T |
|
| Q |
101 |
gtgcatggtgcgccaatagcaggatgtctaggaacgttctgaacaaaaccaaattgcctcaacacgcgctctggcaagtgtggacgataacatgacacac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
32687663 |
gtgcatggtgcgccaatagcaggatgtctaggaacgttctgaacaaaaccaaattgcctcaacacgcgctccggcaagtgtggacgataacatgacacac |
32687762 |
T |
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| Q |
201 |
cacacattatccaccttgaaaaccaaaggatg |
232 |
Q |
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| ||||||||||||| ||||||||||| |||| |
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| T |
32687763 |
cgcacattatccaccctgaaaaccaaatgatg |
32687794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 25207563 - 25207332
Alignment:
| Q |
1 |
tgactgccaatcagtttccactaattgcccacgatcttcttcagatatcagatgcgtattataatcccgaaaagcctgttccatctgataaatactcaat |
100 |
Q |
| |
|
||||||||||||| |||||| || ||||||||||||||||| ||||||| ||||| ||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
25207563 |
tgactgccaatcattttccaatagttgcccacgatcttctttagatatcggatgcatattataatcctaaaaagcatgttccatctgataaatactcaat |
25207464 |
T |
|
| Q |
101 |
gtgcatggtgcgccaatagcaggatgtctaggaacgttctgaacaaaaccaaattgcctcaacacgcgctctggcaagtgtggacgataacatgacacac |
200 |
Q |
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||| ||||||||| |||||||||| |||||||| |||||||||| | | |||||||||| ||| |||| | ||||| |||||||||||||||| | |
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| T |
25207463 |
gtgtatggtgcgctaatagcaggagatctaggaatgttctgaacatatctaaattgcctctgcacatgctccgacaagtatggacgataacatgacttgc |
25207364 |
T |
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| Q |
201 |
cacacattatccaccttgaaaaccaaaggatg |
232 |
Q |
| |
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| |||||| |||||| ||||||||||| |||| |
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| T |
25207363 |
cgcacattgtccaccctgaaaaccaaatgatg |
25207332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 94 - 210
Target Start/End: Complemental strand, 40609297 - 40609181
Alignment:
| Q |
94 |
actcaatgtgcatggtgcgccaatagcaggatgtctaggaacgttctgaacaaaaccaaattgcctcaacacgcgctctggcaagtgtggacgataacat |
193 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| ||| |||||| | ||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
40609297 |
actcaatgtgtatggtgcgccaatagcaggatgtctaggaatgttatgaacatatccaaattgcctcaacacgcgctctggcaagtgtggacaataacat |
40609198 |
T |
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| Q |
194 |
gacacaccacacattat |
210 |
Q |
| |
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|||| ||||||||||| |
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| T |
40609197 |
gacatgccacacattat |
40609181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 94 - 232
Target Start/End: Original strand, 29381046 - 29381184
Alignment:
| Q |
94 |
actcaatgtgcatggtgcgccaatagcaggatgtctaggaacgttctgaacaaaaccaaattgcctcaacacgcgctctggcaagtgtggacgataacat |
193 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||| ||||| |||| | ||||||||||||| |||| |||| ||||||||||||| ||||||| |
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| T |
29381046 |
actcaatgtgtatggtgcgccaatagcaggatgtctaggaatgttcttaacatatccaaattgcctcagcacgtgctccggcaagtgtggacaataacat |
29381145 |
T |
|
| Q |
194 |
gacacaccacacattatccaccttgaaaaccaaaggatg |
232 |
Q |
| |
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|||| | |||||||||||||| ||||||||||| |||| |
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| T |
29381146 |
gacatgcaacacattatccaccctgaaaaccaaacgatg |
29381184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 95 - 232
Target Start/End: Original strand, 47851326 - 47851463
Alignment:
| Q |
95 |
ctcaatgtgcatggtgcgccaatagcaggatgtctaggaacgttctgaacaaaaccaaattgcctcaacacgcgctctggcaagtgtggacgataacatg |
194 |
Q |
| |
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||||||||| | ||||| |||||||||||| |||||||| | |||||| | |||||||||||| ||| |||||||||||||||| ||| |||||| |
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| T |
47851326 |
ctcaatgtgtactgtgcggcaatagcaggatttctaggaatagtttgaacatatccaaattgcctccgcacacgctctggcaagtgtgttcgaaaacatg |
47851425 |
T |
|
| Q |
195 |
acacaccacacattatccaccttgaaaaccaaaggatg |
232 |
Q |
| |
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||| || ||||||||| ||| ||||||||||| |||| |
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| T |
47851426 |
acatgccgcacattatctaccctgaaaaccaaatgatg |
47851463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 29 - 232
Target Start/End: Original strand, 18295822 - 18296025
Alignment:
| Q |
29 |
ccacgatcttcttcagatatcagatgcgtattataatcccgaaaagcctgttccatctgataaatactcaatgtgcatggtgcgccaatagcaggatgtc |
128 |
Q |
| |
|
||||| ||||||||||| ||||||||| |||||||||| | ||||||| | || |||||| ||| ||||||| | |||||| |||||||||||| || |
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| T |
18295822 |
ccacggtcttcttcagaaatcagatgcagattataatcctggaaagcctctgccttctgatgaatgctcaatgagtgcggtgcggcaatagcaggatttc |
18295921 |
T |
|
| Q |
129 |
taggaacgttctgaacaaaaccaaattgcctcaacacgcgctctggcaagtgtggacgataacatgacacaccacacattatccaccttgaaaaccaaag |
228 |
Q |
| |
|
|||||| | |||||| | ||||||||||||| ||| |||||||||||||||| ||| ||||||||| || ||||||||||||| ||||||||||| |
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| T |
18295922 |
taggaatagtttgaacatatccaaattgcctcagcacacgctctggcaagtgtgttcgaaaacatgacatgccgcacattatccaccctgaaaaccaaat |
18296021 |
T |
|
| Q |
229 |
gatg |
232 |
Q |
| |
|
|||| |
|
|
| T |
18296022 |
gatg |
18296025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 195
Target Start/End: Original strand, 14601446 - 14601605
Alignment:
| Q |
35 |
tcttcttcagatatcagatgcgtattataatcccgaaaagcctgttccatctgataaatactcaatgtgcatggtgcgccaatagcaggatgtctaggaa |
134 |
Q |
| |
|
|||||||||| |||||||||| | ||||||| |||| | |||||||| ||| |||| |||| |||| ||||||| |||||| | ||||||||| | |
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| T |
14601446 |
tcttcttcagttatcagatgcagaacataatcctaaaaaacttgttccatttgaaaaatgctca-tgtgtatggtgcaacaatagaggcatgtctaggga |
14601544 |
T |
|
| Q |
135 |
cgttctgaacaaaaccaaattgcctcaacacgcgctctggcaagtgtggacgataacatga |
195 |
Q |
| |
|
|||||||| | | ||||| ||||||||| |||| |||||||||||| || ||||||| |
|
|
| T |
14601545 |
tactctgaacatagctaaatttcctcaacactcgcttcggcaagtgtggatgagaacatga |
14601605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 195
Target Start/End: Original strand, 16021474 - 16021633
Alignment:
| Q |
35 |
tcttcttcagatatcagatgcgtattataatcccgaaaagcctgttccatctgataaatactcaatgtgcatggtgcgccaatagcaggatgtctaggaa |
134 |
Q |
| |
|
|||||||||| |||||||||| | ||||||| |||| | |||||||| ||| |||| |||| |||| ||||||| |||||| | ||||||||| | |
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| T |
16021474 |
tcttcttcagttatcagatgcagaacataatcctaaaaaacttgttccatttgaaaaatgctca-tgtgtatggtgcaacaatagaggcatgtctaggga |
16021572 |
T |
|
| Q |
135 |
cgttctgaacaaaaccaaattgcctcaacacgcgctctggcaagtgtggacgataacatga |
195 |
Q |
| |
|
|||||||| | | ||||| ||||||||| |||| |||||||||||| || ||||||| |
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|
| T |
16021573 |
tactctgaacatagctaaatttcctcaacactcgcttcggcaagtgtggatgagaacatga |
16021633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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