View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_569 (Length: 232)
Name: NF10145A_low_569
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_569 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 24 - 232
Target Start/End: Original strand, 32724253 - 32724462
Alignment:
| Q |
24 |
tatagagagatatcaaagaggggatagagattcatgagtataaattttggttccctatattaacttccttctgttttctttcaataaagaattttcactt |
123 |
Q |
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| T |
32724253 |
tatagagagatatcagagaggggatagagattcatgagtataaattttggttccctatattaactttcttctggtttctttcaataaagaattttcactt |
32724352 |
T |
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| Q |
124 |
taactattatttgttggtgatacaccttcaacattgatggtttacattgtcaatttctaattgaagggacaaaagtcatctaac-gaaacataggttaat |
222 |
Q |
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| T |
32724353 |
tcactattatttgttggtgatacaccttcaacattgatggtttacattgccaatttctaattgaagggacaaaagtcatctaacggaaacataagttaat |
32724452 |
T |
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| Q |
223 |
tgaaaaaagt |
232 |
Q |
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| T |
32724453 |
tgaaaaaagt |
32724462 |
T |
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Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 49 - 187
Target Start/End: Original strand, 4001641 - 4001789
Alignment:
| Q |
49 |
agagattcatgagtataaattttggttccctatattaacttccttctgttttctttcaa---------taaagaattttcactttaactattatttgttg |
139 |
Q |
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| T |
4001641 |
agagattcatgactataaattttagttctctatgttaacatccttctggtttctttcaacttttttatttaagaattttcacttttactattatttgttg |
4001740 |
T |
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| Q |
140 |
gtgatacaccttcaacattgatggtttaca-ttgtcaatttctaattga |
187 |
Q |
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| T |
4001741 |
gttatacaccttcaatattgatggtttacatttgtcagtttctaattga |
4001789 |
T |
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