View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_572 (Length: 231)
Name: NF10145A_low_572
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_572 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 6 - 231
Target Start/End: Complemental strand, 2042407 - 2042182
Alignment:
| Q |
6 |
gacaataagaacataaaaaagagttaagggaatcgagaattggatattctaggagatccctaaaatccccatcgaatttcctcatccatcgaattttttc |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2042407 |
gacaataagaacataaaaaagagttaagggaatcgagaattggatattctaggagatccctaaaatccccatcgaatttcctcatccatcgaattttttc |
2042308 |
T |
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| Q |
106 |
aaaccataacatccccagtcggagagaatgaacgacaatgcaacactcctaatgctccaaaagagaaacttaatgagtaatgtttgatatgatcaccctt |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2042307 |
aaaccataacatccccagtcggagagaatgaacgacaatgcaacactcctaatgcttcaaaagagaaacttaatgagtaatgtttgatatgatcaccctt |
2042208 |
T |
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| Q |
206 |
gtatcgagtagtgtgtttgatattct |
231 |
Q |
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|||||||||||||||||||||||||| |
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| T |
2042207 |
gtatcgagtagtgtgtttgatattct |
2042182 |
T |
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Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 79 - 210
Target Start/End: Original strand, 5747061 - 5747191
Alignment:
| Q |
79 |
gaatttcctcatccatcgaattttttcaaaccataacatccccagtcggag-agaatgaacgacaatgcaacactcctaatgctccaaaagagaaactta |
177 |
Q |
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|||||| ||||||| |||||||||| |||||||||||||| ||||||||| |||| || ||||||||||||| |||||||||||||||||||||||| |
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| T |
5747061 |
gaattttctcatccgtcgaatttttccaaaccataacatctacagtcggagaagaagaaatgacaatgcaacac-cctaatgctccaaaagagaaacttg |
5747159 |
T |
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| Q |
178 |
atgagtaatgtttgatatgatcacccttgtatc |
210 |
Q |
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| T |
5747160 |
atgagtaa-ggttgatatgttcacccttgtatc |
5747191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 79 - 210
Target Start/End: Original strand, 5784020 - 5784150
Alignment:
| Q |
79 |
gaatttcctcatccatcgaattttttcaaaccataacatccccagtcggag-agaatgaacgacaatgcaacactcctaatgctccaaaagagaaactta |
177 |
Q |
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| T |
5784020 |
gaattttctcatccgtcgaatttttccaaaccataacatctacagtcggagaagaagaaatgacaatgcaacac-cctaatgctccaaaagagaaacttg |
5784118 |
T |
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| Q |
178 |
atgagtaatgtttgatatgatcacccttgtatc |
210 |
Q |
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| T |
5784119 |
atgagtaa-ggttgatatgttcacccttgtatc |
5784150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 79 - 209
Target Start/End: Original strand, 7816438 - 7816569
Alignment:
| Q |
79 |
gaatttcctcatccatcgaattttttcaaaccataacatccccagtcggaga-gaatgaacgacaatgcaacactcctaatgctccaaaagagaaactta |
177 |
Q |
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|||||||||||||| ||||||||| ||||||| | ||||| |||||||||| ||| || ||||||||||||| |||||||||||||||||||||| | |
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| T |
7816438 |
gaatttcctcatccgtcgaattttcccaaaccaaaccatcctcagtcggagaagaagtaatgacaatgcaacacccctaatgctccaaaagagaaacatc |
7816537 |
T |
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| Q |
178 |
atgagtaatgtttgatatgatcacccttgtat |
209 |
Q |
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| T |
7816538 |
attagtaatgtttgatacgttcacccttgtat |
7816569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 142 - 210
Target Start/End: Complemental strand, 48206149 - 48206081
Alignment:
| Q |
142 |
aatgcaacactcctaatgctccaaaagagaaacttaatgagtaatgtttgatatgatcacccttgtatc |
210 |
Q |
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| T |
48206149 |
aatgcaacacccttaatactccaaaagagaaacttcatgagtaatgtttgatatgttcacccttgtatc |
48206081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 96 - 205
Target Start/End: Complemental strand, 31150544 - 31150434
Alignment:
| Q |
96 |
gaattttttcaaaccataacatccccagtcggaga-gaatgaacgacaatgcaacactcctaatgctccaaaagagaaacttaatgagtaatgtttgata |
194 |
Q |
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||||||| |||||||||||||||| | |||||||| ||| ||| |||||||| |||| |||||| ||||||||| |||||| ||| ||||||||||||| |
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| T |
31150544 |
gaattttctcaaaccataacatcctcggtcggagaagaaggaatgacaatgccacacctctaatggtccaaaagataaacttcatgtgtaatgtttgata |
31150445 |
T |
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| Q |
195 |
tgatcaccctt |
205 |
Q |
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| T |
31150444 |
tgatcaccctt |
31150434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 79 - 199
Target Start/End: Complemental strand, 3117322 - 3117201
Alignment:
| Q |
79 |
gaatttcctcatccatcgaattttttcaaaccataacatccccagtcggaga-gaatgaacgacaatgcaacactcctaatgctccaaaagagaaactta |
177 |
Q |
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|||||| ||||||| || |||||| |||||||||||||||| |||| | | ||| ||| ||||||||||||| ||||||| ||||||||||| ||| |
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| T |
3117322 |
gaattttctcatccgtcaaattttcccaaaccataacatcccgagtcaaacaagaaagaatgacaatgcaacacccctaatgatccaaaagagagccttc |
3117223 |
T |
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| Q |
178 |
atgagtaatgtttgatatgatc |
199 |
Q |
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||||||||| |||||||||||| |
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| T |
3117222 |
atgagtaatatttgatatgatc |
3117201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 205
Target Start/End: Original strand, 32706243 - 32706302
Alignment:
| Q |
146 |
caacactcctaatgctccaaaagagaaacttaatgagtaatgtttgatatgatcaccctt |
205 |
Q |
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|||||| | ||||| |||||||||||||||| | ||||||||||||||||| |||||||| |
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| T |
32706243 |
caacacacttaatgttccaaaagagaaacttcaagagtaatgtttgatatgctcaccctt |
32706302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 205
Target Start/End: Original strand, 22977605 - 22977655
Alignment:
| Q |
154 |
ctaatgctccaaaagagaaacttaatgagtaatgtttgatatgatcaccctt |
205 |
Q |
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||||| || ||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
22977605 |
ctaatactgcaaaagagaaactta-tgagtaatgtttgatatgttcaccctt |
22977655 |
T |
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