View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_573 (Length: 231)

Name: NF10145A_low_573
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_573
NF10145A_low_573
[»] chr5 (1 HSPs)
chr5 (148-216)||(7819237-7819305)
[»] chr6 (1 HSPs)
chr6 (148-216)||(31100409-31100477)
[»] chr2 (1 HSPs)
chr2 (148-216)||(31997868-31997936)
[»] chr1 (3 HSPs)
chr1 (147-216)||(35601300-35601369)
chr1 (155-198)||(50234565-50234608)
chr1 (161-211)||(7445901-7445951)
[»] chr3 (1 HSPs)
chr3 (155-198)||(46954199-46954242)


Alignment Details
Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 148 - 216
Target Start/End: Original strand, 7819237 - 7819305
Alignment:
Q  148 cattaatcattgcctccgtgaaggaaaccaatgcgccgacttcatggcaaagcttggggccaactccaa 216  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  7819237 cattcatcattgcctccgtgaaggaaatcaatgcgccgacttcatggcgaagcttggggccaactccaa 7819305  T

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Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 148 - 216
Target Start/End: Complemental strand, 31100477 - 31100409
Alignment:
Q  148 cattaatcattgcctccgtgaaggaaaccaatgcgccgacttcatggcaaagcttggggccaactccaa 216  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||    
T  31100477 cattcatcattgcctccgtgaaggaaatcaatgcgccgacttcatggcgaagcatggggccaactccaa 31100409  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 148 - 216
Target Start/End: Original strand, 31997868 - 31997936
Alignment:
Q  148 cattaatcattgcctccgtgaaggaaaccaatgcgccgacttcatggcaaagcttggggccaactccaa 216  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||| |||| | |||||||||||||    
T  31997868 cattcatcattgcctccgtgaaggaaatcaatgcgccgacttcatggcgaagcctagggccaactccaa 31997936  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 216
Target Start/End: Original strand, 35601300 - 35601369
Alignment:
Q  147 ccattaatcattgcctccgtgaaggaaaccaatgcgccgacttcatggcaaagcttggggccaactccaa 216  Q
    ||||| ||||||| |||||||||||||| |||||  | |||| |||||||||| ||||||||||||||||    
T  35601300 ccattcatcattgtctccgtgaaggaaatcaatgtactgactacatggcaaagattggggccaactccaa 35601369  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 198
Target Start/End: Complemental strand, 50234608 - 50234565
Alignment:
Q  155 cattgcctccgtgaaggaaaccaatgcgccgacttcatggcaaa 198  Q
    ||||||||||||||||||||||||||||| || |||||||||||    
T  50234608 cattgcctccgtgaaggaaaccaatgcgctgatttcatggcaaa 50234565  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 7445951 - 7445901
Alignment:
Q  161 ctccgtgaaggaaaccaatgcgccgacttcatggcaaagcttggggccaac 211  Q
    |||||||||||||| || |||||||| |||||||| |||||||||||||||    
T  7445951 ctccgtgaaggaaatcagtgcgccgatttcatggcgaagcttggggccaac 7445901  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 198
Target Start/End: Complemental strand, 46954242 - 46954199
Alignment:
Q  155 cattgcctccgtgaaggaaaccaatgcgccgacttcatggcaaa 198  Q
    ||||||||||||||||||||||||||||| || |||||||||||    
T  46954242 cattgcctccgtgaaggaaaccaatgcgctgatttcatggcaaa 46954199  T

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