View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_578 (Length: 230)
Name: NF10145A_low_578
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_578 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 3067551 - 3067775
Alignment:
| Q |
1 |
tttgtttcacttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaactttttcgac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3067551 |
tttgtttcacttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaactttttcgac |
3067650 |
T |
|
| Q |
101 |
accgacatgttggcctcttattctctcccaaagtgcagtagctattatatccacaaacaccactacctaatttaggaaaataatgacatatattttcagg |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3067651 |
accgacgtgttggcctcttattctctcccaaagtgcagtagctattatatccacaaacaccactacctaatttaggaaaataatgacatatattttcagg |
3067750 |
T |
|
| Q |
201 |
ctgagaccacactatagtccaacct |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
3067751 |
ctgagaccacactatagtccaacct |
3067775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 3055768 - 3055555
Alignment:
| Q |
9 |
acttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaactttttcgacaccgacat |
108 |
Q |
| |
|
||||||||||||||||||| |||| ||||||| |||||||||||||||||||| |||||| |||||||| ||||||||||| | |||| ||||| ||||| |
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| T |
3055768 |
acttagttcatcttctgcacatccttgtatgaagtctggcttgcagctaccaagtggatcatcaggatcaaccagtgagtatcgttttggacactgacat |
3055669 |
T |
|
| Q |
109 |
gttggcctcttattctctcccaaagtgcagtagctattatatccacaaacaccactacctaatttaggaaaataatgacatatattttcaggctgagacc |
208 |
Q |
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||||| ||||||| |||||||||||||| ||||||||||||||||||||||||| ||| |||| || ||||| ||||||||| ||||| | ||||| |
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| T |
3055668 |
gttggtctcttatcaactcccaaagtgcagaagctattatatccacaaacaccactcccttcattagcaatataattacatatattatcaggtttagacc |
3055569 |
T |
|
| Q |
209 |
acactatagtccaa |
222 |
Q |
| |
|
||||||| |||||| |
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| T |
3055568 |
acactatggtccaa |
3055555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 3071190 - 3071411
Alignment:
| Q |
1 |
tttgtttcacttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaactttttcgac |
100 |
Q |
| |
|
||||||| |||| |||||||||||||| |||| ||||||| |||||||||||||||||| |||||| |||||||| | ||||||||||| |||| ||| |
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| T |
3071190 |
tttgttttactttgttcatcttctgcacatccttgtatgaaatctggcttgcagctaccatgtggatcatcaggatcaagcagtgagtaacgttttggac |
3071289 |
T |
|
| Q |
101 |
accgacatgttggcctcttattctctcccaaagtgcagtagctattatatccacaaacaccactacctaatttaggaaaataatgacatatattttcagg |
200 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||| | |||||||||||||||||||||||||| | || || ||| ||||||||||||| ||| |
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|
| T |
3071290 |
accgacatgttggtctcttatcatctcccaaagtgcagatggtattatatccacaaacaccactacctgaactaacaatatattgacatatatttttagg |
3071389 |
T |
|
| Q |
201 |
ctgagaccacactatagtccaa |
222 |
Q |
| |
|
|||||||||||| |||||||| |
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|
| T |
3071390 |
atgagaccacactgtagtccaa |
3071411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 3040767 - 3040546
Alignment:
| Q |
1 |
tttgtttcacttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaactttttcgac |
100 |
Q |
| |
|
||||||| || |||||||||||||||| |||| |||| || |||||||||||||||||| | |||| ||||||||| || ||||||||||| | | ||| |
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|
| T |
3040767 |
tttgttttacatagttcatcttctgcacatccttgtacgaaatctggcttgcagctaccataaggatagtcaggatcaactagtgagtaactatctggac |
3040668 |
T |
|
| Q |
101 |
accgacatgttggcctcttattctctcccaaagtgcagtagctattatatccacaaacaccactacctaatttaggaaaataatgacatatattttcagg |
200 |
Q |
| |
|
||||| ||| ||| ||| ||| |||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||| ||| |
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| T |
3040667 |
accgaaatgctggtctcgtatcatctcccaaagtgcatatgctattatatccacaaacaccactaccttcagtaacaaaataatgacatatatttcgagg |
3040568 |
T |
|
| Q |
201 |
ctgagaccacactatagtccaa |
222 |
Q |
| |
|
|||||||||||| |||||||| |
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| T |
3040567 |
atgagaccacactgtagtccaa |
3040546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 225
Target Start/End: Complemental strand, 3034906 - 3034690
Alignment:
| Q |
9 |
acttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaactttttcgacaccgacat |
108 |
Q |
| |
|
|||| |||||||||||||| |||| ||||||| ||||||||||||||||||||||||||| |||||||| ||||| ||||| | |||| ||||| ||||| |
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|
| T |
3034906 |
acttggttcatcttctgcacatccttgtatgaagtctggcttgcagctaccaaatggatcttcaggatcaaccagcgagtatcgttttggacactgacat |
3034807 |
T |
|
| Q |
109 |
gttggcctcttattctctcccaaagtgcagtagctattatatccacaaacaccactacctaatttaggaaaataatgacatatattttcaggctgagacc |
208 |
Q |
| |
|
| || ||||||| || |||||||||| ||||||||||||||||||||||||||||| || || |||| ||||||||| ||||||| ||||| |
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|
| T |
3034806 |
ttcggtctcttatcaacttccaaagtgcataagctattatatccacaaacaccactacctgcactaacaatataagtacatatattatcaggcttagacc |
3034707 |
T |
|
| Q |
209 |
acactatagtccaacct |
225 |
Q |
| |
|
||||| | ||||||||| |
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|
| T |
3034706 |
acactgtggtccaacct |
3034690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 9 - 168
Target Start/End: Complemental strand, 3042948 - 3042789
Alignment:
| Q |
9 |
acttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaactttttcgacaccgacat |
108 |
Q |
| |
|
||||||||||||||||||| |||| || |||| || ||||| ||| |||||| |||||| || | ||| |||||||||||||||||| ||||| ||||| |
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|
| T |
3042948 |
acttagttcatcttctgcacatccttgcatgaagtttggctcgcaagtaccaagtggatcatcggcatcaaccagtgagtaactttttggacactgacat |
3042849 |
T |
|
| Q |
109 |
gttggcctcttattctctcccaaagtgcagtagctattatatccacaaacaccactacct |
168 |
Q |
| |
|
||||| | ||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
3042848 |
gttggtcacttatcaactcccaaagtgcagaagctattatatccacaaacaccactacct |
3042789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 43 - 168
Target Start/End: Original strand, 3063557 - 3063682
Alignment:
| Q |
43 |
tctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaactttttcgacaccgacatgttggcctcttattctctcccaaagtgcagtagc |
142 |
Q |
| |
|
|||||||||||||| ||| ||||||| | |||||| | ||||||||| |||| ||||| ||||| |||| ||||||| ||||||||||||||| ||| |
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|
| T |
3063557 |
tctggcttgcagctgccatatggatcattaggatcaatcagtgagtactgttttggacactgacattttggtctcttatcatctcccaaagtgcagaagc |
3063656 |
T |
|
| Q |
143 |
tattatatccacaaacaccactacct |
168 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
3063657 |
tattatatccacaaacaccactacct |
3063682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 9 - 149
Target Start/End: Original strand, 25125326 - 25125466
Alignment:
| Q |
9 |
acttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaactttttcgacaccgacat |
108 |
Q |
| |
|
|||||||||||||||| || |||| || |||| |||| ||| ||| |||||| |||||| || ||||| |||||||||||||||||| ||||| ||||| |
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|
| T |
25125326 |
acttagttcatcttctccacatccttgcatgaagtcttgctcgcaagtaccaagtggatcatcgggatcaaccagtgagtaactttttggacactgacat |
25125425 |
T |
|
| Q |
109 |
gttggcctcttattctctcccaaagtgcagtagctattata |
149 |
Q |
| |
|
||||| ||||||| |||||||||||||| |||||||||| |
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|
| T |
25125426 |
gttggtctcttatcaactcccaaagtgcagaagctattata |
25125466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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