View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_58 (Length: 414)
Name: NF10145A_low_58
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_58 |
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Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 15 - 403
Target Start/End: Original strand, 36268678 - 36269067
Alignment:
| Q |
15 |
ggacatcagtgattattgactgctactttcaagcaacctcatacgctacttc-aggcctcgtcattcactccccaacccaaagaaaacatctccgcgact |
113 |
Q |
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|||||||| |||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
36268678 |
ggacatcactgattattgattgctactttcaagcaacctcatacgctacttttaagcctcgtcattcactccccaacccaaagaaaacatttccgcgacc |
36268777 |
T |
|
| Q |
114 |
gttgccaatttgttatcagctaactcaaacaaacttctaaaactatctttcaaagatctaccatccaaccaaggatcattccaaaacagagtagaagact |
213 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||| |
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| T |
36268778 |
gttgccaatttgttatcagctaactgaaacaaacttctaaaactatctttcaaagatctacgatccaaccaaggatcatttcaaaacaaagtagaagact |
36268877 |
T |
|
| Q |
214 |
catccccaaccttccgacaaatattatcaagcagtcgacctcaatctattagcccaacaccctctctaatattattcacagtctgccaacgcactgaccc |
313 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
36268878 |
catcaccaaccttccgacaaatattatcaagcagtcgacctcaatctactagcgcaacaccctctctaatattattcacagtatgccaacacactgaccc |
36268977 |
T |
|
| Q |
314 |
acctcccctccctacacacaacttcccccctttcctgcatgtaacactcacataacaccttataccataaactcattgtatcctccaaca |
403 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
36268978 |
acctcccctccctacacacaactttccccctttcctgcatgtaacactcacataacaccttataccataaactcactgtatcctccaaca |
36269067 |
T |
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