View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_582 (Length: 230)
Name: NF10145A_low_582
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_582 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 39031875 - 39032102
Alignment:
| Q |
1 |
gccttgtttgcaaatattgttccactgacacacaaaagcaccatcttttcttcttcataaataaacggacattcattcattagagctgctgcatctgcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39031875 |
gccttgtttgcaaatattgttccactgacacacaaaagcaccatcttttcttcttcataaataaacggacattcattcattagagctgctgcatctgcat |
39031974 |
T |
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| Q |
101 |
gtatagttcggttgctgtcctctcaggatggcttctgcatctttctgatcactttctcatcggattttggcattgcccatcagttaatcatatgtggatc |
200 |
Q |
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|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39031975 |
gtatagttcggttgctgtcctctctgggtggcttctgcatctttctgatcactttctcatcggattttggcattgcccatcagttaatcatatgtggatc |
39032074 |
T |
|
| Q |
201 |
tgaattctgataccaatgtctccatttt |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
39032075 |
tgaattctgataccaatgtctccatttt |
39032102 |
T |
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