View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10145A_low_585 (Length: 230)
Name: NF10145A_low_585
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_585 |
 | |
|
| [»] chr4 (4 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] scaffold0002 (1 HSPs) |
| |
|
| [»] scaffold1079 (1 HSPs) |
| | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 2 - 230
Target Start/End: Complemental strand, 16899222 - 16898994
Alignment:
| Q |
2 |
catcattgtggtaaaggccgtaatgccagaggaatcattaccgcagggcatagagggggaggtcataagcgtctataccgtaaaattgattttcgacgta |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16899222 |
catcattgtggtaaaggccgtaatgccagaggaatcattaccgcagggcatagagggggaggtcataagcgtctataccgtaaaattgattttcgacgta |
16899123 |
T |
|
| Q |
102 |
atgaaaaagacatatatggtcgaatcgtaactatcgaatacgaccctaatagaaatgcacacatttgtctcatacactatggggatggtgagaaaagata |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16899122 |
atgaaaaagacatatatggtcgaatcgtaactatcgaatacgaccctaatagaaatgcacacatttgtctcatacactatggggatggtgagaaaagata |
16899023 |
T |
|
| Q |
202 |
tattttacaccccagaggggctataattg |
230 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
16899022 |
tattttacaccccagaggggctataattg |
16898994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 2 - 230
Target Start/End: Complemental strand, 18347737 - 18347509
Alignment:
| Q |
2 |
catcattgtggtaaaggccgtaatgccagaggaatcattaccgcagggcatagagggggaggtcataagcgtctataccgtaaaattgattttcgacgta |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18347737 |
catcattgtggtaaaggccgtaatgccagaggaatcattaccgcagggcatagagggggaggtcataagcgtctataccgtaaaattgattttcgacgta |
18347638 |
T |
|
| Q |
102 |
atgaaaaagacatatatggtcgaatcgtaactatcgaatacgaccctaatagaaatgcacacatttgtctcatacactatggggatggtgagaaaagata |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18347637 |
atgaaaaagacatatatggtcgaatcgtaactatcgaatacgaccctaatagaaatgcacacatttgtctcatacactatggggatggtgagaaaagata |
18347538 |
T |
|
| Q |
202 |
tattttacaccccagaggggctataattg |
230 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
18347537 |
tattttacaccccagaggggctataattg |
18347509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 44 - 170
Target Start/End: Complemental strand, 51701232 - 51701101
Alignment:
| Q |
44 |
gcagggcatagaggggg-aggtcataagcgtctataccgtaaaattgattttcgacgtaatgaaaaagacatatatggtcgaatcgtaactatcga---- |
138 |
Q |
| |
|
||||||||||||||||| || ||||||| |||||||| |||||||||||||||| ||||||| |||||||||||||| || |||||||| ||| |
|
|
| T |
51701232 |
gcagggcatagaggggggagatcataagtgtctatactgtaaaattgattttcgtaagaatgaaatagacatatatggtcaaaacgtaactaacgaatat |
51701133 |
T |
|
| Q |
139 |
atacgaccctaatagaaatgcacacatttgtc |
170 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |
|
|
| T |
51701132 |
atacgaccctaattgaaatgcacacatttgtc |
51701101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 51701430 - 51701385
Alignment:
| Q |
5 |
cattgtggtaaaggccgtaatgccagaggaatcattaccgcagggc |
50 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
51701430 |
cattgtgttaaaggccgtaatgccagaggaatctttaccgcagggc |
51701385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 2 - 230
Target Start/End: Original strand, 13236754 - 13236982
Alignment:
| Q |
2 |
catcattgtggtaaaggccgtaatgccagaggaatcattaccgcagggcatagagggggaggtcataagcgtctataccgtaaaattgattttcgacgta |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13236754 |
catcattgtggtaaaggccgtaatgccagaggaatcattaccgcagggcatagagggggaggtcataagcgtctataccgtaaaattgattttcgacgta |
13236853 |
T |
|
| Q |
102 |
atgaaaaagacatatatggtcgaatcgtaactatcgaatacgaccctaatagaaatgcacacatttgtctcatacactatggggatggtgagaaaagata |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13236854 |
atgaaaaagacatatatggtcgaatcgtaactatcgaatacgaccctaatagaaatgcacacatttgtctcatacactatggggatggtgagaaaagata |
13236953 |
T |
|
| Q |
202 |
tattttacaccccagaggggctataattg |
230 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
13236954 |
tattttacaccccagaggggctataattg |
13236982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 7 - 230
Target Start/End: Original strand, 198277 - 198500
Alignment:
| Q |
7 |
ttgtggtaaaggccgtaatgccagaggaatcattaccgcagggcatagagggggaggtcataagcgtctataccgtaaaattgattttcgacgtaatgaa |
106 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||| || |
|
|
| T |
198277 |
ttgtggtaaaggtcgtaattccagaggaatcattaccgcatggcatagagggggaggtcataagcgcctataccgtaaaatagattttcgacggaatcaa |
198376 |
T |
|
| Q |
107 |
aaagacatatatggtcgaatcgtaactatcgaatacgaccctaatagaaatgcacacatttgtctcatacactatggggatggtgagaaaagatatattt |
206 |
Q |
| |
|
|||||||||| |||| |||||||||| || ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
198377 |
aaagacatatctggtagaatcgtaaccatagaatacgaccctaatcgaaatgcatacatttgtctcatacactatggggatggtgagaagagatatattt |
198476 |
T |
|
| Q |
207 |
tacaccccagaggggctataattg |
230 |
Q |
| |
|
|||| ||||||||||||||||||| |
|
|
| T |
198477 |
tacatcccagaggggctataattg |
198500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1079 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: scaffold1079
Description:
Target: scaffold1079; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 2 - 195
Target Start/End: Complemental strand, 194 - 1
Alignment:
| Q |
2 |
catcattgtggtaaaggccgtaatgccagaggaatcattaccgcagggcatagagggggaggtcataagcgtctataccgtaaaattgattttcgacgta |
101 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
194 |
catcgttgtggtaaaggtcgtaatgccagaggaatcattaccgcaaggcatagagggggaggtcataagcgtctataccgtaaaattgattttcgacgaa |
95 |
T |
|
| Q |
102 |
atgaaaaagacatatatggtcgaatcgtaactatcgaatacgaccctaatagaaatgcacacatttgtctcatacactatggggatggtgagaa |
195 |
Q |
| |
|
|||||||||||||||||||| |||||||||| || ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
94 |
atgaaaaagacatatatggtagaatcgtaaccatagaatacgaccctaatcgaaatgcatacatttgtctcatacactatggggatggtgagaa |
1 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 117; Significance: 9e-60; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 110 - 230
Target Start/End: Complemental strand, 33420594 - 33420474
Alignment:
| Q |
110 |
gacatatatggtcgaatcgtaactatcgaatacgaccctaatagaaatgcacacatttgtctcatacactatggggatggtgagaaaagatatattttac |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33420594 |
gacatatatggtcgaatcgtaactatcgaatacgaccctaatagaaatgcacacatttatctcatacactatggggatggtgagaaaagatatattttac |
33420495 |
T |
|
| Q |
210 |
accccagaggggctataattg |
230 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
33420494 |
accccagaggggctataattg |
33420474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 2 - 127
Target Start/End: Original strand, 23053460 - 23053585
Alignment:
| Q |
2 |
catcattgtggtaaaggccgtaatgccagaggaatcattaccgcagggcatagagggggaggtcataagcgtctataccgtaaaattgattttcgacgta |
101 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
23053460 |
catcactgtggtaaaggctgtaatgccagaggaatcgttaccacagggcatagagggagaggtcataagcgtctataccgtaaaattgattttctacgga |
23053559 |
T |
|
| Q |
102 |
atgaaaaagacatatatggtcgaatc |
127 |
Q |
| |
|
||||||||||||||||| |||||||| |
|
|
| T |
23053560 |
atgaaaaagacatatatagtcgaatc |
23053585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 91 - 161
Target Start/End: Original strand, 26345819 - 26345889
Alignment:
| Q |
91 |
ttttcgacgtaatgaaaaagacatatatggtcgaatcgtaactatcgaatacgaccctaatagaaatgcac |
161 |
Q |
| |
|
||||||||| ||| ||||||||||||||| | |||||||||||| ||| || |||||||| ||||||||| |
|
|
| T |
26345819 |
ttttcgacggaataaaaaagacatatatgattgaatcgtaactagtgaaaacaaccctaatcgaaatgcac |
26345889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University