View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_586 (Length: 230)
Name: NF10145A_low_586
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_586 |
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| [»] scaffold0867 (1 HSPs) |
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Alignment Details
Target: scaffold0867 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: scaffold0867
Description:
Target: scaffold0867; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 2355 - 2128
Alignment:
| Q |
1 |
tatcagcagacgttccatatgccaacatacgaataacagcagtgcatttttgtaggggtgaaatacttggtctaccagttgcgtcaaccttcggctgaaa |
100 |
Q |
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|||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2355 |
tatcggcagatgttccatatgccagcatacgaataacagcagtgcatttttgtaggggtgaaatacttggtctaccagttgcgtcaaccttcggctgaaa |
2256 |
T |
|
| Q |
101 |
atattcatcatgttggctaagagcttcaactatacgaaggaaaacatgtttacgcattcggtaccttcggcggaattgctcatctatgaaaaccggagtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
2255 |
atattcatcatgttggctaagagcttcaactatacgaaggaaaacatgtttacgcattcggtaccttcgacggaattgctcatctgtgaaaaccggagtt |
2156 |
T |
|
| Q |
201 |
tctgaaaaataatcattgaataaccgct |
228 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
2155 |
tctgaaaaataatcattgaataaccgct |
2128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 23561303 - 23561530
Alignment:
| Q |
1 |
tatcagcagacgttccatatgccaacatacgaataacagcagtgcatttttgtaggggtgaaatacttggtctaccagttgcgtcaaccttcggctgaaa |
100 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||| |||||| || ||||||| |
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| T |
23561303 |
tatcagcagatgttccatatgccaacatacgaataacagcagtgcatttttgtagtggtgaaatacctgatctaccagttgcatcaaccctcagctgaaa |
23561402 |
T |
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| Q |
101 |
atattcatcatgttggctaagagcttcaactatacgaaggaaaacatgtttacgcattcggtaccttcggcggaattgctcatctatgaaaaccggagtt |
200 |
Q |
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| T |
23561403 |
atactcatcatattggctaagagcttcaactaagcgaagaaagacatgtttatgcattcgataccttagacggaactgctcatccgtgtacactggagtt |
23561502 |
T |
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| Q |
201 |
tctgaaaaataatcattgaataaccgct |
228 |
Q |
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| T |
23561503 |
tctgaaaaataatcattgaataatcgct |
23561530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 48264281 - 48264508
Alignment:
| Q |
1 |
tatcagcagacgttccatatgccaacatacgaataacagcagtgcatttttgtaggggtgaaatacttggtctaccagttgcgtcaaccttcggctgaaa |
100 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||| || ||||| |||||| |||||| || ||||||| |
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| T |
48264281 |
tatcagcagatgttccatatgccaacatacgaataacaacagtgcatttttgtagtggtgaaatacctgatctactagttgcatcaaccctcagctgaaa |
48264380 |
T |
|
| Q |
101 |
atattcatcatgttggctaagagcttcaactatacgaaggaaaacatgtttacgcattcggtaccttcggcggaattgctcatctatgaaaaccggagtt |
200 |
Q |
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||| |||||| ||||| ||||||||||||||| ||||| || ||||||||| |||||||||||||| | | ||| |||||||| || | || ||||| |
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| T |
48264381 |
atacccatcatattggccaagagcttcaactatgcgaagaaagacatgtttatgcattcggtaccttagacagaactgctcatccgtgtacactagagtt |
48264480 |
T |
|
| Q |
201 |
tctgaaaaataatcattgaataaccgct |
228 |
Q |
| |
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||||||||||||||||||||||| |||| |
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| T |
48264481 |
tctgaaaaataatcattgaataatcgct |
48264508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 13 - 228
Target Start/End: Original strand, 16681182 - 16681397
Alignment:
| Q |
13 |
ttccatatgccaacatacgaataacagcagtgcatttttgtaggggtgaaatacttggtctaccagttgcgtcaaccttcggctgaaaatattcatcatg |
112 |
Q |
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||||||| ||||| |||||||||||| |||||||||||| ||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
16681182 |
ttccatacgccaaaatacgaataacatcagtgcatttttttaggggtgaaatacttgatctaccacttgcgtcaaccctcggctgaaaatattcatcatg |
16681281 |
T |
|
| Q |
113 |
ttggctaagagcttcaactatacgaaggaaaacatgtttacgcattcggtaccttcggcggaattgctcatctatgaaaaccggagtttctgaaaaataa |
212 |
Q |
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||| ||||||||||||||||| ||||||| ||||||||||||||||| ||||||| | ||| |||||||| || |||| |||| ||||||||||||| |
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| T |
16681282 |
ttgactaagagcttcaactatgtgaaggaagacatgtttacgcattcgataccttcaacagaactgctcatccgtgtaaactggagcttctgaaaaataa |
16681381 |
T |
|
| Q |
213 |
tcattgaataaccgct |
228 |
Q |
| |
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|||| |||||| |||| |
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| T |
16681382 |
tcatcgaataaacgct |
16681397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 12 - 228
Target Start/End: Complemental strand, 5190134 - 5189917
Alignment:
| Q |
12 |
gttccatatgccaacatacgaataacagcagtgcatttttgtaggggtgaaatacttggtctaccagttgcgtcaaccttcggctgaaaatattcatcat |
111 |
Q |
| |
|
|||||||||||||| ||| | |||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
5190134 |
gttccatatgccaatgtacaaccaacaacaatgcatttttgtaggggtgaaatacttggtctaccagttgcgtcaaccctcgactgaaaatattcatcat |
5190035 |
T |
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| Q |
112 |
gttggctaagagcttcaactatacgaaggaaaacatgtttacgcattcggtaccttcggcggaattgctcatctatg-aaaaccggagtttctgaaaaat |
210 |
Q |
| |
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|||| ||||||||||||| ||| |||||||| |||||||||||||||||||||||| | ||||| |||| ||| || | || ||||| || |||||||| |
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| T |
5190034 |
gttgactaagagcttcaattatgcgaaggaagacatgtttacgcattcggtaccttagacggaactgctgatccgtgtataatcggagcttatgaaaaat |
5189935 |
T |
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| Q |
211 |
aatcattgaataaccgct |
228 |
Q |
| |
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|||||||||||||||||| |
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| T |
5189934 |
aatcattgaataaccgct |
5189917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 9212161 - 9212384
Alignment:
| Q |
1 |
tatcagcagacgttccatatgccaacatacgaataacagcagtgcatttttgtaggggtgaaatacttggtctaccagttgcgtcaaccttcggctgaaa |
100 |
Q |
| |
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|||||||||| ||| ||| ||||||||||| ||||||| |||||||||||| || |||||||||| ||| |||||| | |||||||||| || ||||||| |
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| T |
9212161 |
tatcagcagatgtttcatctgccaacatacaaataacatcagtgcatttttttatgggtgaaatatttgatctacccggtgcgtcaaccctcagctgaaa |
9212260 |
T |
|
| Q |
101 |
atattcatcatgttggctaagagcttcaactatacgaaggaaaacatgtttacgcattcggtaccttcggcggaattgctcatctatgaaaaccggagtt |
200 |
Q |
| |
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||| ||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||| || |||| ||| | |
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| T |
9212261 |
atactcatcatgttgatcaagagtttcaactatgtgaaggaaaacatgtttacgcattcggtaccttcgacgaaattgctcatccgtgtaaactagagct |
9212360 |
T |
|
| Q |
201 |
tctgaaaaataatcattgaataac |
224 |
Q |
| |
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||| |||||||||||||||||||| |
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| T |
9212361 |
tctaaaaaataatcattgaataac |
9212384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 73 - 228
Target Start/End: Complemental strand, 1885770 - 1885615
Alignment:
| Q |
73 |
taccagttgcgtcaaccttcggctgaaaatattcatcatgttggctaagagcttcaactatacgaaggaaaacatgtttacgcattcggtaccttcggcg |
172 |
Q |
| |
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||||||||||||||||| || |||||||||||||||||||||| | ||||||||||||||| |||||||| ||||||||| |||||||||||||||| || |
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| T |
1885770 |
taccagttgcgtcaaccgtcagctgaaaatattcatcatgttgaccaagagcttcaactatgcgaaggaagacatgtttatgcattcggtaccttcgacg |
1885671 |
T |
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| Q |
173 |
gaattgctcatctatgaaaaccggagtttctgaaaaataatcattgaataaccgct |
228 |
Q |
| |
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|| | |||||| ||| ||||||||| ||||||||||||||| ||||||||||||| |
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| T |
1885670 |
aaactactcatccatgtaaaccggagcttctgaaaaataatcgttgaataaccgct |
1885615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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