View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10145A_low_587 (Length: 230)
Name: NF10145A_low_587
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_587 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 9996442 - 9996213
Alignment:
| Q |
1 |
gtaatccctcgccttacaagtcgattttgtagggttgtgtaaagctaaacctaaatttgattcattacaagaagtcattatttcgcgccattttggattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9996442 |
gtaatccctcgccttacaagtcgattttgtagggttgtgtaaagctaaacccaaatttgattcattacaagaagtcattatttcgcgccattttggattt |
9996343 |
T |
|
| Q |
101 |
gaaactcaaatgtttcttcctttgttacatgagagaagaagacataataataaggcttaatttcatattcagtcttgaatatagcaattgtgtaattttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9996342 |
gaaactcaaatgtttcttcctttgttacatgagagaagaagacataataataaggcttaatttcatattcagtcttgaatatagcaattgtgtaattttg |
9996243 |
T |
|
| Q |
201 |
gttgctcactttttaattgtgctattttga |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
9996242 |
gttgctcactttttaattgtgctattttga |
9996213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University