View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_590 (Length: 230)

Name: NF10145A_low_590
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_590
NF10145A_low_590
[»] chr8 (4 HSPs)
chr8 (1-230)||(7452581-7452810)
chr8 (83-215)||(16420774-16420906)
chr8 (11-49)||(45255521-45255559)
chr8 (181-230)||(19384572-19384621)
[»] chr1 (10 HSPs)
chr1 (1-230)||(36306013-36306242)
chr1 (17-197)||(21528427-21528607)
chr1 (17-230)||(37530795-37531008)
chr1 (134-230)||(48265533-48265629)
chr1 (83-230)||(32353061-32353208)
chr1 (83-230)||(48073195-48073342)
chr1 (160-215)||(30970449-30970504)
chr1 (165-215)||(25504839-25504889)
chr1 (11-49)||(47106375-47106413)
chr1 (187-224)||(3073985-3074022)
[»] chr7 (10 HSPs)
chr7 (1-230)||(15653387-15653616)
chr7 (1-186)||(46623966-46624151)
chr7 (27-215)||(12378436-12378624)
chr7 (83-230)||(13440282-13440429)
chr7 (160-230)||(45943080-45943150)
chr7 (165-214)||(27941340-27941389)
chr7 (160-215)||(43105555-43105610)
chr7 (165-215)||(25924314-25924364)
chr7 (11-49)||(34232109-34232147)
chr7 (165-215)||(45992820-45992870)
[»] chr3 (11 HSPs)
chr3 (1-230)||(30167026-30167255)
chr3 (1-230)||(49731614-49731843)
chr3 (83-230)||(2813264-2813411)
chr3 (83-215)||(29309652-29309784)
chr3 (83-230)||(6176242-6176389)
chr3 (108-215)||(9379341-9379448)
chr3 (160-230)||(23602002-23602072)
chr3 (170-226)||(28308709-28308765)
chr3 (165-215)||(30435297-30435347)
chr3 (11-49)||(50544634-50544672)
chr3 (166-215)||(25872955-25873004)
[»] chr2 (10 HSPs)
chr2 (1-215)||(45421763-45421978)
chr2 (83-230)||(43627728-43627875)
chr2 (83-229)||(26894376-26894522)
chr2 (83-229)||(26899815-26899961)
chr2 (115-212)||(13550371-13550468)
chr2 (160-230)||(33548101-33548171)
chr2 (165-215)||(15017920-15017970)
chr2 (181-230)||(22052856-22052905)
chr2 (159-216)||(7300918-7300975)
chr2 (150-230)||(31085468-31085548)
[»] chr5 (6 HSPs)
chr5 (1-230)||(10486602-10486831)
chr5 (17-230)||(34481176-34481389)
chr5 (73-230)||(587745-587902)
chr5 (165-215)||(11574540-11574590)
chr5 (165-211)||(22095096-22095142)
chr5 (11-47)||(6049633-6049669)
[»] scaffold0418 (1 HSPs)
scaffold0418 (46-214)||(7920-8088)
[»] chr4 (14 HSPs)
chr4 (46-214)||(7662966-7663134)
chr4 (1-230)||(8654755-8654984)
chr4 (18-230)||(47541154-47541366)
chr4 (1-230)||(3129664-3129890)
chr4 (83-230)||(2631627-2631774)
chr4 (83-230)||(55298849-55298996)
chr4 (83-230)||(20675251-20675398)
chr4 (83-230)||(23873240-23873387)
chr4 (165-224)||(29553586-29553645)
chr4 (165-215)||(23657639-23657689)
chr4 (83-230)||(8486745-8486892)
chr4 (165-215)||(49926112-49926162)
chr4 (165-215)||(19114680-19114730)
chr4 (165-215)||(19647953-19648003)
[»] scaffold0029 (1 HSPs)
scaffold0029 (1-230)||(134536-134765)
[»] scaffold0002 (2 HSPs)
scaffold0002 (1-230)||(312363-312592)
scaffold0002 (1-230)||(327817-328046)
[»] scaffold0131 (1 HSPs)
scaffold0131 (1-94)||(4231-4324)
[»] chr6 (9 HSPs)
chr6 (83-230)||(23347231-23347378)
chr6 (83-230)||(25318083-25318230)
chr6 (83-230)||(26205577-26205724)
chr6 (83-230)||(15674054-15674205)
chr6 (166-215)||(5085873-5085922)
chr6 (165-215)||(19255884-19255934)
chr6 (165-215)||(33640162-33640212)
chr6 (16-49)||(19236907-19236940)
chr6 (178-215)||(33630341-33630378)


Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 7452810 - 7452581
Alignment:
Q  1 agggttggaaatggttctgatacgttgttttggtatgataagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaa 100  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |    
T  7452810 agggttggagatggttctgatacgttgttttggtatgataggtggttaggggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaga 7452711  T
Q  101 ataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcagtgggaggaggagtt 200  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||    
T  7452710 ataagcttatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtttggaggtggaggcgtagattgtggcagtgggaggaggtgtt 7452611  T
Q  201 gttagaggagtgtagaattttacttcttga 230  Q
     ||||||||||||||   ||||||||||||    
T  7452610 attagaggagtgtagggctttacttcttga 7452581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 83 - 215
Target Start/End: Original strand, 16420774 - 16420906
Alignment:
Q  83 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtg 182  Q
    ||||||||||||| || ||||||   ||||||||||| |||||| |||||||||||| ||||| |  |||||  || ||||||||||| ||||| || ||    
T  16420774 tgtttgagttaacagagaataagtctatgtctgtggccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatg 16420873  T
Q  183 gcagtgggaggaggagttgttagaggagtgtag 215  Q
    ||||||||||||||||||| |||| ||| ||||    
T  16420874 gcagtgggaggaggagttgctagatgagcgtag 16420906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 45255521 - 45255559
Alignment:
Q  11 atggttctgatacgttgttttggtatgataagtggttag 49  Q
    ||||||| ||||| |||||||||||||||||||||||||    
T  45255521 atggttccgatactttgttttggtatgataagtggttag 45255559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 19384572 - 19384621
Alignment:
Q  181 tggcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 230  Q
    |||||||||||||||||| |||||| |||||||||   ||||||||||||    
T  19384572 tggcagtgggaggaggagatgttagtggagtgtagggctttacttcttga 19384621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 36306242 - 36306013
Alignment:
Q  1 agggttggaaatggttctgatacgttgttttggtatgataagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaa 100  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |    
T  36306242 agggttggagatggttctgatacgttgttttggtatgataggtggttaggggatgttcctttctgtgtcctttttcgtagactgtttgagttaacggaga 36306143  T
Q  101 ataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcagtgggaggaggagtt 200  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |    
T  36306142 ataagctcatgtatgtggcagacttgttctctgttgatttggagcagcagggggttgtttggaggtggaggcgtagattgtggcagtggaaggaggagat 36306043  T
Q  201 gttagaggagtgtagaattttacttcttga 230  Q
    |||||||||||||||   ||||||||||||    
T  36306042 gttagaggagtgtagggctttacttcttga 36306013  T

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Target: chr1; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 17 - 197
Target Start/End: Complemental strand, 21528607 - 21528427
Alignment:
Q  17 ctgatacgttgttttggtatgataagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaaataagctcatgtctgt 116  Q
    ||||||||||||||||||  |||| |||||||| |||||||||||| ||||||||||||||||| |||||||||||||| || |||||| ||||||||||    
T  21528607 ctgatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgttttcgtaggctgtttgagttaacagagaataagttcatgtctgt 21528508  T
Q  117 ggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcagtgggaggagga 197  Q
     | |||||||||||||||||||| ||||||   ||||||| | ||||||||||| ||||| || ||| |||||||||||||    
T  21528507 tggagacttgttctctgttgattcggagcaatggggggttatgtggaggtggagacgtaggttatggtagtgggaggagga 21528427  T

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Target: chr1; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 17 - 230
Target Start/End: Complemental strand, 37531008 - 37530795
Alignment:
Q  17 ctgatacgttgttttggtatgataagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaaataagctcatgtctgt 116  Q
    ||||||| | |||||||| ||||| |||||||| ||| |||||| | |||||  |  || || |  ||||||||||||| || ||||||   |||| |||    
T  37531008 ctgatacttcgttttggtctgataggtggttaggggaggttcctctttgtgtgagacttagtcggttgtttgagttaacagagaataagactatgtatgt 37530909  T
Q  117 ggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtaga 216  Q
    |||||||||| |||||||||||| ||||| |  |||||  || ||||||||||| ||||| || |||||||||||||||| |||| |||||||||||||     
T  37530908 ggcagacttgctctctgttgattcggagcggtggggggaagtgtggaggtggagacgtaggttatggcagtgggaggaggggttgctagaggagtgtagg 37530809  T
Q  217 attttacttcttga 230  Q
      ||||||||||||    
T  37530808 gctttacttcttga 37530795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 134 - 230
Target Start/End: Original strand, 48265533 - 48265629
Alignment:
Q  134 ttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 230  Q
    ||||| |||||| || ||||||| | ||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||   ||||||||||||    
T  48265533 ttgatctggagcggcggggggttatgtggaggtggagacgtaggttgtggcagtgggaggaggagttgttagcggagtgtagggctttacttcttga 48265629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 83 - 230
Target Start/End: Original strand, 32353061 - 32353208
Alignment:
Q  83 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtg 182  Q
    ||||||||||||| || ||||||   ||||| ||||| |||||| |||||||||||| ||||| |  |||||  || ||||||||||| ||||| || ||    
T  32353061 tgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatg 32353160  T
Q  183 gcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 230  Q
    ||||||| ||||||||||| |||| ||||||||   ||||||||||||    
T  32353161 gcagtggaaggaggagttgctagatgagtgtagggctttacttcttga 32353208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 83 - 230
Target Start/End: Original strand, 48073195 - 48073342
Alignment:
Q  83 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtg 182  Q
    ||||||||||||| || ||||||   ||||| || || |||||| |||||||||||| ||||| |  |||||  || ||||||||||| ||||| || ||    
T  48073195 tgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatg 48073294  T
Q  183 gcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 230  Q
    | ||||||||||||||||| |||| |||||| |   ||||||||||||    
T  48073295 ggagtgggaggaggagttgctagatgagtgtggggctttacttcttga 48073342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 215
Target Start/End: Original strand, 30970449 - 30970504
Alignment:
Q  160 tggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtag 215  Q
    ||||||||||||||||||||||||  ||||||||||||| || | | |||||||||    
T  30970449 tggaggtggaggcgtagattgtgggcgtgggaggaggagatggtggcggagtgtag 30970504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 25504839 - 25504889
Alignment:
Q  165 gtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtag 215  Q
    ||||||||| |||||||||  ||||||||||||| |||||| |||||||||    
T  25504839 gtggaggcggagattgtgggcgtgggaggaggagatgttagtggagtgtag 25504889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 47106375 - 47106413
Alignment:
Q  11 atggttctgatacgttgttttggtatgataagtggttag 49  Q
    ||||||| ||||| |||||||||||||||||||||||||    
T  47106375 atggttccgatactttgttttggtatgataagtggttag 47106413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 3074022 - 3073985
Alignment:
Q  187 tgggaggaggagttgttagaggagtgtagaattttact 224  Q
    ||||||||||||||||||| ||||||||| ||||||||    
T  3074022 tgggaggaggagttgttaggggagtgtaggattttact 3073985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 166; Significance: 5e-89; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 15653387 - 15653616
Alignment:
Q  1 agggttggaaatggttctgatacgttgttttggtatgataagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaa 100  Q
    ||||||||| |||| ||||||||||||||||||| ||||| |||||||| |||||||||||| |||| |||||||||||||||||||||||||||||| |    
T  15653387 agggttggagatggatctgatacgttgttttggtttgataggtggttaggggatgttcctttttgtgcccgttttcgtagactgtttgagttaacggaga 15653486  T
Q  101 ataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcagtgggaggaggagtt 200  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |    
T  15653487 ataagctcatgtctatggcagacttgttctctgttgatttggagcagcagggggttttctggaggtggaggcgtagattgtggcagtgggaggaggagat 15653586  T
Q  201 gttagaggagtgtagaattttacttcttga 230  Q
    ||||| |||||||||   ||||||||||||    
T  15653587 gttagcggagtgtagggctttacttcttga 15653616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 46624151 - 46623966
Alignment:
Q  1 agggttggaaatggttctgatacgttgttttggtatgataagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaa 100  Q
    |||||| || |||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |    
T  46624151 agggttagagatggttctgatacgttgttttggtttgataggtggttaggggatgttcctttctgtgtccgttttcgcagactgtttgagttaacggaga 46624052  T
Q  101 ataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcag 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  || | ||||||||||||||||| |||||||||    
T  46624051 ataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggatttttttggaggtggaggcgtagtttgtggcag 46623966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 27 - 215
Target Start/End: Original strand, 12378436 - 12378624
Alignment:
Q  27 gttttggtatgataagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaaataagctcatgtctgtggcagacttg 126  Q
    |||||||||||||| |||| ||| |||||||||| ||||||  || | || ||||||||||||||||| ||| |||||| |||||||||||||| | |||    
T  12378436 gttttggtatgataggtggataggggatgttcctctctgtgagcggtatcatagactgtttgagttaatggagaataagatcatgtctgtggcaaatttg 12378535  T
Q  127 ttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtag 215  Q
    |||| |||| | | | ||| |  ||||| | | | |||| ||||||| || ||||||||||||||||||||| |||||| |||||||||    
T  12378536 ttctttgttaagtcgaagcggtggggggatttgttgaggcggaggcgcaggttgtggcagtgggaggaggagatgttagcggagtgtag 12378624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 83 - 230
Target Start/End: Complemental strand, 13440429 - 13440282
Alignment:
Q  83 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtg 182  Q
    ||||||||||||| || ||||||   ||||| || || |||||| |||||||||||| ||||| |  |||||  || ||||||||||| ||||| || ||    
T  13440429 tgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtagtttatg 13440330  T
Q  183 gcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 230  Q
    | ||||||||||||||||| |||| |||||| |   ||||||||||||    
T  13440329 gtagtgggaggaggagttgctagatgagtgttgggctttacttcttga 13440282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 45943150 - 45943080
Alignment:
Q  160 tggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 230  Q
    |||||||||||  ||||||| ||||||||||||||||||||| |||||||||||||   ||||||||||||    
T  45943150 tggaggtggagatgtagattatggcagtgggaggaggagttgctagaggagtgtagggctttacttcttga 45943080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 214
Target Start/End: Original strand, 27941340 - 27941389
Alignment:
Q  165 gtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgta 214  Q
    ||||||||| |||||||||  |||||||||||||||||||||||||||||    
T  27941340 gtggaggcggagattgtgggcgtgggaggaggagttgttagaggagtgta 27941389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 43105610 - 43105555
Alignment:
Q  160 tggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtag 215  Q
    |||||||||||||| || |||||||| |||||||||||| ||||||  ||||||||    
T  43105610 tggaggtggaggcgcaggttgtggcaatgggaggaggagatgttagcagagtgtag 43105555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 25924364 - 25924314
Alignment:
Q  165 gtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtag 215  Q
    ||||||||| || ||||||  |||||||||||||||||||| |||||||||    
T  25924364 gtggaggcggagtttgtgggcgtgggaggaggagttgttagtggagtgtag 25924314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 34232147 - 34232109
Alignment:
Q  11 atggttctgatacgttgttttggtatgataagtggttag 49  Q
    |||||||||| || |||||||||||||||||||||||||    
T  34232147 atggttctgacactttgttttggtatgataagtggttag 34232109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 45992870 - 45992820
Alignment:
Q  165 gtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtag 215  Q
    ||||||||| |||||||||  ||||||||||||| |||||| |||||||||    
T  45992870 gtggaggcggagattgtgggcgtgggaggaggagatgttagtggagtgtag 45992820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 154; Significance: 8e-82; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 30167026 - 30167255
Alignment:
Q  1 agggttggaaatggttctgatacgttgttttggtatgataagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaa 100  Q
    ||||||||  ||||||||||||||||||||||||  |||| |||||||| ||||||||| ||||||||||||||||||||| ||||||||||||| || |    
T  30167026 agggttggtgatggttctgatacgttgttttggttggataggtggttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaacagaga 30167125  T
Q  101 ataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcagtgggaggaggagtt 200  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||| |    
T  30167126 ataagctcatgtttgtggcagacttgttctctgttgatctggagcagcagggtgttttttggaggtggaggcgtagattgtggcagtgggaggaggagat 30167225  T
Q  201 gttagaggagtgtagaattttacttcttga 230  Q
    ||||| ||||||||| | ||||||||||||    
T  30167226 gttagcggagtgtaggactttacttcttga 30167255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 49731614 - 49731843
Alignment:
Q  1 agggttggaaatggttctgatacgttgttttggtatgataagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaa 100  Q
    ||||||||| ||||  |||| || |||||||||| ||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||| || |    
T  49731614 agggttggagatggagctgacacattgttttggtttgataggtggttaggggatgttcctttttgtgtccgttttcgtagactgtttgagttaacagaga 49731713  T
Q  101 ataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcagtgggaggaggagtt 200  Q
    ||||| |||||| |||||||||||||||||||||||||  |||||||| ||||||| | ||||||||||| ||||| |||||||||||||||||||||||    
T  49731714 ataagttcatgtatgtggcagacttgttctctgttgatccggagcagcggggggttatgtggaggtggagacgtagtttgtggcagtgggaggaggagtt 49731813  T
Q  201 gttagaggagtgtagaattttacttcttga 230  Q
    ||| | |||||||||   ||||||||||||    
T  49731814 gttggcggagtgtagggctttacttcttga 49731843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 83 - 230
Target Start/End: Original strand, 2813264 - 2813411
Alignment:
Q  83 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtg 182  Q
    ||||||||||||| || ||||||   ||||| || || |||||| |||||||||||| ||||| |  |||||  || ||||||||||| ||||| || ||    
T  2813264 tgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatg 2813363  T
Q  183 gcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 230  Q
    ||||||||||||||||||| |||| ||||||||   ||||||||||||    
T  2813364 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 2813411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 83 - 215
Target Start/End: Complemental strand, 29309784 - 29309652
Alignment:
Q  83 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtg 182  Q
    ||||||||||||| || ||||||   ||||| ||||| |||||| ||||||| |||| ||||| |  |||||  || ||||||||||| ||||| || ||    
T  29309784 tgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgtcgattcggagcggtggggggaggtgtggaggtggagacgtaggttatg 29309685  T
Q  183 gcagtgggaggaggagttgttagaggagtgtag 215  Q
    ||||||||||||||||||| |||| ||||||||    
T  29309684 gcagtgggaggaggagttgctagatgagtgtag 29309652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 83 - 230
Target Start/End: Original strand, 6176242 - 6176389
Alignment:
Q  83 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtg 182  Q
    ||||||||||||  || ||||||   ||||| || || |||||| |||||||||||| ||||| |  |||||  || ||||||||||| ||||| || |     
T  6176242 tgtttgagttaatagagaataagtctatgtccgtcgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttata 6176341  T
Q  183 gcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 230  Q
    ||||||||||||||||||| |||| ||||||||   ||||||||||||    
T  6176342 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 6176389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 108 - 215
Target Start/End: Complemental strand, 9379448 - 9379341
Alignment:
Q  108 catgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcagtgggaggaggagttgttagag 207  Q
    ||||| ||||||| ||||||||| ||||||||  ||||||  ||||| | | |||||||||||||| || || |||||||||||||||| | |||||| |    
T  9379448 catgtatgtggcaaacttgttctatgttgattcagagcagtggggggatttgtggaggtggaggcgcaggttatggcagtgggaggaggggatgttagcg 9379349  T
Q  208 gagtgtag 215  Q
    ||||||||    
T  9379348 gagtgtag 9379341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 23602072 - 23602002
Alignment:
Q  160 tggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 230  Q
    ||||||||||| | ||| || ||||||||||||||||||||| |||| ||||||||   ||||||||||||    
T  23602072 tggaggtggagacataggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 23602002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 226
Target Start/End: Complemental strand, 28308765 - 28308709
Alignment:
Q  170 ggcgtagattgtggcagtgggaggaggagttgttagaggagtgtagaattttacttc 226  Q
    ||||||| ||||||  ||||||||||||| | |||| ||||||||||||||||||||    
T  28308765 ggcgtaggttgtgggcgtgggaggaggagatcttaggggagtgtagaattttacttc 28308709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 30435347 - 30435297
Alignment:
Q  165 gtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtag 215  Q
    ||||||||| || |||||| |||||||||||||| |||||| |||||||||    
T  30435347 gtggaggcggaggttgtgggagtgggaggaggagctgttaggggagtgtag 30435297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 50544672 - 50544634
Alignment:
Q  11 atggttctgatacgttgttttggtatgataagtggttag 49  Q
    |||||||||| || |||||||||||||||||||||||||    
T  50544672 atggttctgacaccttgttttggtatgataagtggttag 50544634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 25872955 - 25873004
Alignment:
Q  166 tggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtag 215  Q
    ||||| ||||| || |||||||||||||||| |||| |||||||||||||    
T  25872955 tggagacgtaggttatggcagtgggaggaggggttgctagaggagtgtag 25873004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 136; Significance: 4e-71; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 45421978 - 45421763
Alignment:
Q  1 agggttggaaatggttctgatacgttgttttggtatgataagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaa 100  Q
    ||||||||  ||||||||||||||||||||||||  |||| |||||||| ||||||||| ||||||||||||||||||||| ||||||||||||| || |    
T  45421978 agggttggtgatggttctgatacgttgttttggttggataggtggttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaacagaga 45421879  T
Q  101 ataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggg-gttgtatggaggtggaggcgtagattgtggcagtgggaggaggagt 199  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||||||||||  || | |||||||||||||||||||||| ||||||||||||||||     
T  45421878 ataagctcatgtatgtggcagacttgttctctgttgatctggagcagcaggggttttttttggaggtggaggcgtagattgtcgcagtgggaggaggaga 45421779  T
Q  200 tgttagaggagtgtag 215  Q
    |||||| |||||||||    
T  45421778 tgttagcggagtgtag 45421763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 83 - 230
Target Start/End: Complemental strand, 43627875 - 43627728
Alignment:
Q  83 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtg 182  Q
    ||||||||||||| || ||||||   ||||  ||||| |||||| ||||| |||||| ||||  |  |||||  || ||||||||||| ||||| || ||    
T  43627875 tgtttgagttaacagagaataagtctatgttcgtggccgacttgctctctattgattcggagaggtggggggaggtgtggaggtggagacgtaggttatg 43627776  T
Q  183 gcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 230  Q
    ||||||||||||||||||| |||| ||||||||   ||||||||||||    
T  43627775 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 43627728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 229
Target Start/End: Original strand, 26894376 - 26894522
Alignment:
Q  83 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtg 182  Q
    ||||||||||||| || ||||||   ||||||||  | |||||| ||||||||| || ||||| |  ||||   || ||||||||||| ||||| || ||    
T  26894376 tgtttgagttaacagagaataagtctatgtctgtcaccgacttgctctctgttgcttcggagcggtgggggaaggtgtggaggtggagacgtaggttatg 26894475  T
Q  183 gcagtgggaggaggagttgttagaggagtgtagaattttacttcttg 229  Q
    ||||||||||||||||||| |||| ||||||||   |||||||||||    
T  26894476 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttg 26894522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 229
Target Start/End: Original strand, 26899815 - 26899961
Alignment:
Q  83 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtg 182  Q
    ||||||||||||| || ||||||   ||||||||  | |||||| ||||||||| || ||||| |  ||||   || ||||||||||| ||||| || ||    
T  26899815 tgtttgagttaacagagaataagtctatgtctgtcaccgacttgctctctgttgcttcggagcggtgggggaaggtgtggaggtggagacgtaggttatg 26899914  T
Q  183 gcagtgggaggaggagttgttagaggagtgtagaattttacttcttg 229  Q
    ||||||||||||||||||| |||| ||||||||   |||||||||||    
T  26899915 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttg 26899961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 115 - 212
Target Start/End: Complemental strand, 13550468 - 13550371
Alignment:
Q  115 gtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtg 212  Q
    ||||| |||||| | |||||||||| |||||||  ||||| ||| ||||||||||| ||||| || ||||||||||| ||||| ||| ||||||||||    
T  13550468 gtggcggacttgctttctgttgattcggagcagtggggggatgtgtggaggtggagacgtaggttatggcagtgggatgaggacttgctagaggagtg 13550371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 33548171 - 33548101
Alignment:
Q  160 tggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 230  Q
    ||||||||||| ||||| || ||||||||||||||||||||| |||| ||||||||   ||||||||||||    
T  33548171 tggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 33548101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 15017970 - 15017920
Alignment:
Q  165 gtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtag 215  Q
    ||||||||| |||||||||  ||||||||||||| ||||||||||||||||    
T  15017970 gtggaggcggagattgtgggtgtgggaggaggagatgttagaggagtgtag 15017920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 22052905 - 22052856
Alignment:
Q  181 tggcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 230  Q
    ||||||||||||||||||||| |||||||||||||   ||||||||||||    
T  22052905 tggcagtgggaggaggagttgctagaggagtgtagggctttacttcttga 22052856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 216
Target Start/End: Complemental strand, 7300975 - 7300918
Alignment:
Q  159 atggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtaga 216  Q
    |||||| |||||| | |||||||||  ||||||||||||| || ||||||||||||||    
T  7300975 atggagttggaggagaagattgtgggtgtgggaggaggagatggtagaggagtgtaga 7300918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 230
Target Start/End: Original strand, 31085468 - 31085548
Alignment:
Q  150 gggggttgtatggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 230  Q
    ||||| ||| |||||||||||  | || ||||| ||||||||||||||| ||||||  ||||||||   ||||||||||||    
T  31085468 gggggatgtgtggaggtggagatgcaggttgtgacagtgggaggaggagctgttagcagagtgtagggctttacttcttga 31085548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 126; Significance: 4e-65; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 10486602 - 10486831
Alignment:
Q  1 agggttggaaatggttctgatacgttgttttggtatgataagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaa 100  Q
    ||||||||| ||||  ||||||||||||||||||  |||| |||||||| |||| ||||||| ||||||||||||||||| ||||||||||||||  | |    
T  10486602 agggttggagatggagctgatacgttgttttggttggataggtggttaggggatcttcctttttgtgtccgttttcgtaggctgtttgagttaacataga 10486701  T
Q  101 ataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcagtgggaggaggagtt 200  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||| | ||||||||||| ||||| ||||||||||||||||||||  |    
T  10486702 ataagttcatgtctgtggcagacttgttctctgttgattcggagcagcggggggttatgtggaggtggagacgtaggttgtggcagtgggaggaggacat 10486801  T
Q  201 gttagaggagtgtagaattttacttcttga 230  Q
    ||||| |||||||||   ||||||||||||    
T  10486802 gttagcggagtgtagggctttacttcttga 10486831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 230
Target Start/End: Complemental strand, 34481389 - 34481176
Alignment:
Q  17 ctgatacgttgttttggtatgataagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaaataagctcatgtctgt 116  Q
    ||||||| | ||||||||  |||| |||||||| ||| |||||| | |||||  | ||| || |  ||||||||||||| || ||||||   ||||||||    
T  34481389 ctgatacttcgttttggtccgataggtggttaggggaggttcctctttgtgtgaggtttagtcggttgtttgagttaacagagaataagtctatgtctgt 34481290  T
Q  117 ggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtaga 216  Q
    |||| | ||| |||||||||||| ||||| |  |||||  || ||||||||||| ||||| || |||||||||||||||| |||| |||||||||||||     
T  34481289 ggcatatttgctctctgttgattcggagcggtggggggaagtgtggaggtggagacgtaggttatggcagtgggaggaggggttgctagaggagtgtagg 34481190  T
Q  217 attttacttcttga 230  Q
      ||||||||||||    
T  34481189 gctttacttcttga 34481176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 230
Target Start/End: Complemental strand, 587902 - 587745
Alignment:
Q  73 tttcgtagactgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggc 172  Q
    |||||| |||||||||| ||||| || ||||||  |||  |  ||||| |||||||||||||   || ||||||   ||||| ||| |||||||||||||    
T  587902 tttcgtcgactgtttgaattaactgagaataagaccatcacaatggcaaacttgttctctgtgagttcggagcattggggggatgtctggaggtggaggc 587803  T
Q  173 gtagattgtggcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 230  Q
    ||||  | |||  ||||||||||||  ||||||||||||||||   ||||||||||||    
T  587802 gtaggctatggatgtgggaggaggatatgttagaggagtgtagggctttacttcttga 587745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 11574540 - 11574590
Alignment:
Q  165 gtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtag 215  Q
    ||||||||| |||||||||  ||||||||||||| ||||||||||||||||    
T  11574540 gtggaggcggagattgtgggcgtgggaggaggagatgttagaggagtgtag 11574590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 211
Target Start/End: Original strand, 22095096 - 22095142
Alignment:
Q  165 gtggaggcgtagattgtggcagtgggaggaggagttgttagaggagt 211  Q
    ||||||||| |||||||||  ||||||||||||||||||||||||||    
T  22095096 gtggaggcggagattgtgggcgtgggaggaggagttgttagaggagt 22095142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 6049669 - 6049633
Alignment:
Q  11 atggttctgatacgttgttttggtatgataagtggtt 47  Q
    ||||||||||||| |||||||||||||||||||||||    
T  6049669 atggttctgatactttgttttggtatgataagtggtt 6049633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 46 - 214
Target Start/End: Complemental strand, 8088 - 7920
Alignment:
Q  46 ttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagc 145  Q
    |||| ||||||||| ||||||||||||||||||||| ||||||||||||  || ||||||||||||||| ||||||||||||||||||||||||||||||    
T  8088 ttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaatagagaataagctcatgtctatggcagacttgttctctgttgatttggagc 7989  T
Q  146 agcagggggttgtatggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgta 214  Q
    |||||||| || | ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  7988 agcaggggtttttttggaggtggaggcgtagattgtggcagtgggaggaggagatgttagtggagtgta 7920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 121; Significance: 4e-62; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 46 - 214
Target Start/End: Original strand, 7662966 - 7663134
Alignment:
Q  46 ttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagc 145  Q
    |||| ||||||||| ||||||||||||||||||||| ||||||||||||  || ||||||||||||||| ||||||||||||||||||||||||||||||    
T  7662966 ttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaatagagaataagctcatgtctatggcagacttgttctctgttgatttggagc 7663065  T
Q  146 agcagggggttgtatggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgta 214  Q
    |||||||| || | ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  7663066 agcaggggtttttttggaggtggaggcgtagattgtggcagtgggaggaggagatgttagtggagtgta 7663134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 8654755 - 8654984
Alignment:
Q  1 agggttggaaatggttctgatacgttgttttggtatgataagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaa 100  Q
    ||||||||| ||||  || |||||||||||||||  |||| |||||||| |||||||||||| ||||||||||| ||||| |||||||||||||| || |    
T  8654755 agggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagaga 8654854  T
Q  101 ataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcagtgggaggaggagtt 200  Q
    ||||| | |||||||||||||||||||| |||||||||| |||||||  ||||||| | ||||||||||| ||||| |||||||||||||||||||| ||    
T  8654855 ataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggactt 8654954  T
Q  201 gttagaggagtgtagaattttacttcttga 230  Q
    ||||| |||||||||   ||||||||||||    
T  8654955 gttagcggagtgtagggctttacttcttga 8654984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 47541366 - 47541154
Alignment:
Q  18 tgatacgttgttttggtatgataagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaaataagctcatgtctgtg 117  Q
    ||||||||||||||||| ||||| |||||||| |||||||||||| ||||| |||||| ||||||||||||||||||| || |||||| |||||||||||    
T  47541366 tgatacgttgttttggtttgataggtggttaggggatgttcctttttgtgttcgtttttgtagactgtttgagttaacagagaataagttcatgtctgtg 47541267  T
Q  118 gcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtagaa 217  Q
    ||||||||||| |||||||||| |||||||| ||| ||| | ||||||||||| ||| | |||||||||||| |||||||| |||||| |||||||||      
T  47541266 gcagacttgttttctgttgattcggagcagccgggagttatgtggaggtggagacgtcgtttgtggcagtggaaggaggagatgttagcggagtgtaggg 47541167  T
Q  218 ttttacttcttga 230  Q
     ||||||||||||    
T  47541166 ctttacttcttga 47541154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 3129664 - 3129890
Alignment:
Q  1 agggttggaaatggttctgatacgttgttttggtatgataagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaa 100  Q
    ||||||||| ||||  ||||||| |||||||||| || || |||||||| |||||||||||| |||||||||||| ||||||||||||||||||| || |    
T  3129664 agggttggagatggagctgatacattgttttggtttggtaggtggttaggggatgttcctttttgtgtccgttttagtagactgtttgagttaacagaga 3129763  T
Q  101 ataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcagtgggaggaggagtt 200  Q
    ||||| |||||||||||||||||||||||||| |||||| ||||||||  ||||||   ||||||||||| ||| | |||||||||||   ||||||| |    
T  3129764 ataagttcatgtctgtggcagacttgttctctattgattcggagcagctaggggttacgtggaggtggagacgttgtttgtggcagtg---ggaggagat 3129860  T
Q  201 gttagaggagtgtagaattttacttcttga 230  Q
    ||||| |||||||||   ||||||||||||    
T  3129861 gttagcggagtgtagggctttacttcttga 3129890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 83 - 230
Target Start/End: Complemental strand, 2631774 - 2631627
Alignment:
Q  83 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtg 182  Q
    ||||||||||||| || ||||||   ||||||||||| |||||| |||||||||||| ||||| |  |||||  || ||||||||||| ||||| || ||    
T  2631774 tgtttgagttaacagagaataagtctatgtctgtggccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatg 2631675  T
Q  183 gcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 230  Q
    ||||||||||||||||||| |||| ||||||||   ||||||||||||    
T  2631674 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 2631627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 83 - 230
Target Start/End: Complemental strand, 55298996 - 55298849
Alignment:
Q  83 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtg 182  Q
    ||||||||||||| || ||||||   ||||| || || |||||| |||||||||||| ||||| |  |||||  || ||||||||||| ||||| || ||    
T  55298996 tgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtagtttatg 55298897  T
Q  183 gcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 230  Q
    ||||||||||||||||||| |||| ||||||||   ||||||||||||    
T  55298896 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 55298849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 83 - 230
Target Start/End: Complemental strand, 20675398 - 20675251
Alignment:
Q  83 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtg 182  Q
    ||||||||||||| || ||||||   || || ||||| |||||| ||| |||||||| ||||| |  |||||  || ||||||||||| ||||| || ||    
T  20675398 tgtttgagttaacagagaataagtctatatccgtggccgacttgctctttgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatg 20675299  T
Q  183 gcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 230  Q
    ||||||||||||||||||| | || |||||||| | ||||||||||||    
T  20675298 gcagtgggaggaggagttgcttgatgagtgtaggactttacttcttga 20675251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 83 - 230
Target Start/End: Original strand, 23873240 - 23873387
Alignment:
Q  83 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtg 182  Q
    ||||||||||||| || ||||||   ||||| || || |||||| |||||||||||| ||||| |  |||||  || ||||||||||| ||||| |  ||    
T  23873240 tgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggtaatg 23873339  T
Q  183 gcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 230  Q
    ||||||||||||||||||| |||| ||||||||   ||||||||||||    
T  23873340 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 23873387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 165 - 224
Target Start/End: Original strand, 29553586 - 29553645
Alignment:
Q  165 gtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtagaattttact 224  Q
    ||||||||| |||||||||  |||||||||||||||||||||||||||||| | ||||||    
T  29553586 gtggaggcggagattgtgggcgtgggaggaggagttgttagaggagtgtaggactttact 29553645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 23657689 - 23657639
Alignment:
Q  165 gtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtag 215  Q
    ||||||||| |||||||||  ||||||||||||||||||||||||||||||    
T  23657689 gtggaggcggagattgtgggcgtgggaggaggagttgttagaggagtgtag 23657639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 230
Target Start/End: Original strand, 8486745 - 8486892
Alignment:
Q  83 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtg 182  Q
    ||||||||||||| || ||||||   ||||| || |  |||||| |||||||||||| ||| | |  |||||  || ||||||||||| ||||| || ||    
T  8486745 tgtttgagttaacagagaataagtctatgtccgtcgtcgacttgctctctgttgattcggaccggtggggggaggtgtggaggtggagacgtaggttatg 8486844  T
Q  183 gcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 230  Q
    |||||||||| |||||||| ||||  |||||||   ||||||||||||    
T  8486845 gcagtgggagaaggagttgctagattagtgtagggctttacttcttga 8486892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 49926112 - 49926162
Alignment:
Q  165 gtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtag 215  Q
    ||||||||| |||||||||  |||||||||||||||||||| |||||||||    
T  49926112 gtggaggcggagattgtgggcgtgggaggaggagttgttagtggagtgtag 49926162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 19114730 - 19114680
Alignment:
Q  165 gtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtag 215  Q
    ||||||||| |||||||||  ||||||||||||| | ||||||||||||||    
T  19114730 gtggaggcggagattgtgggtgtgggaggaggagatattagaggagtgtag 19114680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 19648003 - 19647953
Alignment:
Q  165 gtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtag 215  Q
    ||||||||| |||||||||  ||||||||||||| |||||| |||||||||    
T  19648003 gtggaggcggagattgtgggcgtgggaggaggagatgttagtggagtgtag 19647953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 134536 - 134765
Alignment:
Q  1 agggttggaaatggttctgatacgttgttttggtatgataagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaa 100  Q
    ||||||||| ||||  || |||||||||||||||  |||| |||||||| |||||||||||| ||||||||||| ||||| |||||||||||||| || |    
T  134536 agggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagaga 134635  T
Q  101 ataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcagtgggaggaggagtt 200  Q
    ||||| | |||||||||||||||||||| ||| |||||| |||||||  ||||||| | ||||||||||| ||||| |||||||||||||||||||| ||    
T  134636 ataagtttatgtctgtggcagacttgttatctattgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggactt 134735  T
Q  201 gttagaggagtgtagaattttacttcttga 230  Q
    ||||| |||||||||   ||||||||||||    
T  134736 gttagcggagtgtagggctttacttcttga 134765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 312363 - 312592
Alignment:
Q  1 agggttggaaatggttctgatacgttgttttggtatgataagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaa 100  Q
    ||||||||| ||||  || |||||||||||||||  |||| |||||||| |||||||||||| ||||||||||| ||||| |||||||||||||| || |    
T  312363 agggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagaga 312462  T
Q  101 ataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcagtgggaggaggagtt 200  Q
    ||||| | |||||||||||||||||||| ||| |||||| |||||||  ||||||| | ||||||||||| ||||| |||||||||||||||||||| ||    
T  312463 ataagtttatgtctgtggcagacttgttatctattgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggactt 312562  T
Q  201 gttagaggagtgtagaattttacttcttga 230  Q
    ||||| |||||||||   ||||||||||||    
T  312563 gttagcggagtgtagggctttacttcttga 312592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 327817 - 328046
Alignment:
Q  1 agggttggaaatggttctgatacgttgttttggtatgataagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaa 100  Q
    ||||||||| ||||  || |||||||||||||||  |||| |||||||| |||||||||||| ||||||||||| ||||| |||||||||||||| || |    
T  327817 agggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagaga 327916  T
Q  101 ataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcagtgggaggaggagtt 200  Q
    ||||| | |||||||||||||||||||| ||| |||||| |||||||  ||||||| | ||||||||||| ||||| |||||||||||||||||||| ||    
T  327917 ataagtttatgtctgtggcagacttgttatctattgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggactt 328016  T
Q  201 gttagaggagtgtagaattttacttcttga 230  Q
    ||||| |||||||||   ||||||||||||    
T  328017 gttagcggagtgtagggctttacttcttga 328046  T

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Target: scaffold0131 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 4231 - 4324
Alignment:
Q  1 agggttggaaatggttctgatacgttgttttggtatgataagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaa 94  Q
    ||||||||| ||||  || |||||||||||||||  |||| |||||||| |||||||||||| ||||||||||||||||| |||||||||||||    
T  4231 agggttggagatggagctcatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgttttcgtaggctgtttgagttaa 4324  T

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Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 83 - 230
Target Start/End: Original strand, 23347231 - 23347378
Alignment:
Q  83 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtg 182  Q
    ||||||||||||| || ||||||   ||||| || || |||||| |||||||||||| ||||| |  |||||  || ||||||||||| ||||| || ||    
T  23347231 tgtttgagttaacagagaataagtctatgtccgtcgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatg 23347330  T
Q  183 gcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 230  Q
    ||||||||||||||||||| |||| ||||||||   ||||||||||||    
T  23347331 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 23347378  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 83 - 230
Target Start/End: Complemental strand, 25318230 - 25318083
Alignment:
Q  83 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtg 182  Q
    |||||||||||||  | |||||| | ||||| ||||| |||||| | ||||||||||   ||| |  ||||| | | ||||||||||  ||||| || ||    
T  25318230 tgtttgagttaacaaagaataagtttatgtccgtggcggacttgctatctgttgattcaaagcggtggggggatttgtggaggtggatacgtaggttatg 25318131  T
Q  183 gcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 230  Q
    ||||||||||||||||||| |||||||||||||   ||||||||||||    
T  25318130 gcagtgggaggaggagttgctagaggagtgtagggctttacttcttga 25318083  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 83 - 230
Target Start/End: Complemental strand, 26205724 - 26205577
Alignment:
Q  83 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtg 182  Q
    |||||||||||||  | |||||| | ||||| ||||| |||||| | ||||||||||   ||| |  ||||| | | ||||||||||  ||||| || ||    
T  26205724 tgtttgagttaacaaagaataagtttatgtccgtggcggacttgctatctgttgattcaaagcggtggggggatttgtggaggtggatacgtaggttatg 26205625  T
Q  183 gcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 230  Q
    ||||||||||||||||||| |||||||||||||   ||||||||||||    
T  26205624 gcagtgggaggaggagttgctagaggagtgtagggctttacttcttga 26205577  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 230
Target Start/End: Complemental strand, 15674205 - 15674054
Alignment:
Q  83 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagc----agcagggggttgtatggaggtggaggcgtagat 178  Q
    |||||||||||||||| ||||||   ||||||||||| |||||  ||||||||||||  ||||     |   ||||  || ||||||||||| ||||| |    
T  15674205 tgtttgagttaacggagaataagtctatgtctgtggccgacttactctctgttgattcagagcgttggggccggggaggtgtggaggtggagacgtaggt 15674106  T
Q  179 tgtggcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 230  Q
    ||||||||||||||||||||||| |||| ||||| ||   ||||||||||||    
T  15674105 tgtggcagtgggaggaggagttgctagatgagtgcagggctttacttcttga 15674054  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 5085873 - 5085922
Alignment:
Q  166 tggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtag 215  Q
    |||||||| |||||||||  ||||||||||||| ||||||||||||||||    
T  5085873 tggaggcggagattgtgggcgtgggaggaggagatgttagaggagtgtag 5085922  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 19255934 - 19255884
Alignment:
Q  165 gtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtag 215  Q
    ||||||||| |||||||||  ||||||||||||| |||||| |||||||||    
T  19255934 gtggaggcggagattgtgggcgtgggaggaggagatgttagtggagtgtag 19255884  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 33640212 - 33640162
Alignment:
Q  165 gtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtag 215  Q
    ||||||||| |||||||||  ||||||||||||| |||||| |||||||||    
T  33640212 gtggaggcggagattgtgggcgtgggaggaggagatgttagtggagtgtag 33640162  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 49
Target Start/End: Complemental strand, 19236940 - 19236907
Alignment:
Q  16 tctgatacgttgttttggtatgataagtggttag 49  Q
    |||||||||||||||||||||||||| |||||||    
T  19236940 tctgatacgttgttttggtatgataaatggttag 19236907  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 215
Target Start/End: Complemental strand, 33630378 - 33630341
Alignment:
Q  178 ttgtggcagtgggaggaggagttgttagaggagtgtag 215  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  33630378 ttgtggcagtgggaggaggagatgttagcggagtgtag 33630341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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