View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_591 (Length: 230)
Name: NF10145A_low_591
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_591 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 43119301 - 43119074
Alignment:
| Q |
1 |
agagcactgctaaatcacacgacaaatacgtatgcacgaccagcacgacaagtgatgtggcatcacttcctttttttaaattaaattttaaattaaacaa |
100 |
Q |
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| T |
43119301 |
agagcactgctaaatcacacgacaa-tacgtacgcaccaccagcacgacaagtgatgtggcgtcacttcctttttttaaattaaattttaaataaaacaa |
43119203 |
T |
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| Q |
101 |
attattnnnnnnnntatctgatgagtgtttagtgcaatacatacggccgtgcatatcccacgacaaggcaagtcgtgcatttaagcatttcgctaaattt |
200 |
Q |
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| T |
43119202 |
attaaaaaaaataa-atctgattagtgtttagtgcaatacagacggccgtgcatatcccacgacaaggcaagtcgtgcatttaagcatttcgctaaattt |
43119104 |
T |
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| Q |
201 |
aatgtcttaagattttaggttaaaagttga |
230 |
Q |
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| T |
43119103 |
aatgtcttaagattttaggttaaaagttga |
43119074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 3509546 - 3509443
Alignment:
| Q |
1 |
agagcactgctaaatcacacgacaaatacgtatgcacgaccagcacgacaagtgatgtggcatcacttcctttttttaaattaaattttaaattaaacaa |
100 |
Q |
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|||||| |||||||||||||||||||| | || ||||||| ||||||| | ||||||||||||||||||||||||| |||||||||||||| | |||||| |
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| T |
3509546 |
agagcattgctaaatcacacgacaaatccatacgcacgacaagcacgataggtgatgtggcatcacttccttttttaaaattaaattttaattaaaacaa |
3509447 |
T |
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| Q |
101 |
atta |
104 |
Q |
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|||| |
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| T |
3509446 |
atta |
3509443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 189
Target Start/End: Complemental strand, 3509407 - 3509366
Alignment:
| Q |
148 |
cgtgcatatcccacgacaaggcaagtcgtgcatttaagcatt |
189 |
Q |
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| T |
3509407 |
cgtgcatatcccacgacaaagcaagtcgtgtattcaagcatt |
3509366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 25094113 - 25094011
Alignment:
| Q |
1 |
agagcactgctaaatcacacgacaaatacgtatgcacgaccagcacgacaagtgatgtggcatcacttcctttttttaaattaaattttaaattaaacaa |
100 |
Q |
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|||||| ||||||||||||| |||||| | ||||||||| ||||||| | ||||||||||||||||||||| |||||||||||||||||| | |||||| |
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| T |
25094113 |
agagcattgctaaatcacacaacaaatccacatgcacgacaagcacgataggtgatgtggcatcacttcctt-ttttaaattaaattttaattaaaacaa |
25094015 |
T |
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| Q |
101 |
atta |
104 |
Q |
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|||| |
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| T |
25094014 |
atta |
25094011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 200
Target Start/End: Original strand, 21208015 - 21208072
Alignment:
| Q |
143 |
acggccgtgcatatcccacgacaaggcaagtcgtgcatttaagcatttcgctaaattt |
200 |
Q |
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| T |
21208015 |
acggtcgtgcatatcccacgacaaagcaagtcgtgtattcaagcatttctctatattt |
21208072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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