View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_592 (Length: 230)
Name: NF10145A_low_592
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_592 |
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| [»] chr7 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 27659415 - 27659201
Alignment:
| Q |
1 |
ttaagcatggactttgttcatatataaacacaaacagcataccagaaaacaggggtggcacaaacagcagaccagaaatcacaaacaggcctcacaaaca |
100 |
Q |
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||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27659415 |
ttaagcaaggactttgttcatata--aacacaaacagcataccagaaaacaggggtggcacaaacagcagaccagaaatcacaaacagc----------- |
27659329 |
T |
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| Q |
101 |
ttacagacctcccttctcaggccagatagcagaaaaggcccatgcagaaaaacactccctgcaccccctaatatagcagcactactacagatagcaaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27659328 |
--acagacctcccttctcaggccagatagcagaaaaggcccaggcagaaaaacactccctgcaccccctaatatagcagcactactacagatagcaaaat |
27659231 |
T |
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| Q |
201 |
agtggaataacttgttctctaagactctga |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
27659230 |
agtggaataacttgttctctaagactctga |
27659201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 41 - 196
Target Start/End: Complemental strand, 32017413 - 32017255
Alignment:
| Q |
41 |
accagaaaacaggggtggcacaaacagcagaccagaaatcacaaacaggcctcacaaacattacagacctcccttctcaggccagatagcagaaaaggcc |
140 |
Q |
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||||||||| ||||| || |||||||||||||||||| || ||| |||||||||||||| | |||||||||||| ||||||||||||||||||| ||| |
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| T |
32017413 |
accagaaaaaaggggaggtgcaaacagcagaccagaaagcataaaaaggcctcacaaacagcaaagacctcccttcccaggccagatagcagaaaaagcc |
32017314 |
T |
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| Q |
141 |
catgcag--aaaaacactccctgca-ccccctaatatagcagcactactacagatagca |
196 |
Q |
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| T |
32017313 |
caggcagtaaacaacactccccgcacccccccaagacagcagcactactacagatagca |
32017255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 37604660 - 37604887
Alignment:
| Q |
1 |
ttaagcatggactttgttcatatataaacacaaacagcataccagaaaacaggggtggcacaaacagcagaccagaaatcacaaacaggcctcacaaaca |
100 |
Q |
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||||||||| ||||||||||||| ||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
37604660 |
ttaagcatgaactttgttcatat--aaacacaaacagcataccaaaaaacaggggaggcgcaaacagcagaccagaaatcacaaacaggcctcacaaaca |
37604757 |
T |
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| Q |
101 |
ttacagacctcccttctcaggccagatagcagaaaaggcccatgcagaaaaacactccctgcaccccctaatatagcagcactactacagatagcaaaat |
200 |
Q |
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|||||||||||||| || |||||||||||||||||||||| || |||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
37604758 |
gcacagacctcccttcccaagccagatagcagaaaaggcccagccataaaaacactccctgcaccccctaagatagtagcactactacagatagcaaaat |
37604857 |
T |
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| Q |
201 |
agtggaataacttgttctctaagactctga |
230 |
Q |
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|||| ||||||||||||||||||||||||| |
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| T |
37604858 |
agtgaaataacttgttctctaagactctga |
37604887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 61 - 196
Target Start/End: Complemental strand, 25542728 - 25542594
Alignment:
| Q |
61 |
caaacagcagaccagaaatcacaaacaggcctcacaaacattacagacctcccttctcaggccagatagcagaaaaggcccatgcagaaaaacactccct |
160 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| | |||| |||| | |||| |||||| | ||||| |||| ||||||||| |||||| |
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| T |
25542728 |
caaacagcagaccagaaaacacaaacaggcctcacaaacagaaaagacttccc-acccaggttagatagaaaaaaagccccaggcagaaaaatactccca |
25542630 |
T |
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| Q |
161 |
gcaccccctaatatagcagcactactacagatagca |
196 |
Q |
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|||| |||||| | ||||| |||||| |||||||| |
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| T |
25542629 |
gcactccctaagacagcagtgctactaaagatagca |
25542594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 172
Target Start/End: Complemental strand, 23352876 - 23352817
Alignment:
| Q |
113 |
cttctcaggccagatagcagaaaaggcccatgcagaaaaacactccctgcaccccctaat |
172 |
Q |
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|||| ||||||||| ||||||||||||||| | | ||||| ||||||||||||||||||| |
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| T |
23352876 |
cttcccaggccagacagcagaaaaggcccaggaataaaaatactccctgcaccccctaat |
23352817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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