View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_599 (Length: 230)

Name: NF10145A_low_599
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_599
NF10145A_low_599
[»] scaffold0065 (1 HSPs)
scaffold0065 (1-230)||(12674-12903)
[»] scaffold0337 (1 HSPs)
scaffold0337 (32-230)||(3573-3770)
[»] chr4 (18 HSPs)
chr4 (9-230)||(29437832-29438046)
chr4 (23-230)||(19602200-19602400)
chr4 (71-143)||(26160281-26160353)
chr4 (80-226)||(13066207-13066352)
chr4 (76-137)||(12028470-12028531)
chr4 (80-144)||(33519508-33519572)
chr4 (68-228)||(4733168-4733325)
chr4 (85-230)||(22120145-22120287)
chr4 (170-230)||(10577022-10577082)
chr4 (80-144)||(21077747-21077811)
chr4 (82-150)||(31859451-31859518)
chr4 (74-125)||(10576943-10576994)
chr4 (82-197)||(23354066-23354178)
chr4 (76-230)||(7023718-7023870)
chr4 (168-225)||(26188314-26188370)
chr4 (162-230)||(18444761-18444829)
chr4 (180-230)||(5676765-5676815)
chr4 (81-142)||(16441791-16441852)
[»] chr1 (18 HSPs)
chr1 (71-230)||(21549116-21549273)
chr1 (71-230)||(25778203-25778360)
chr1 (108-230)||(52270712-52270832)
chr1 (76-202)||(25665306-25665430)
chr1 (71-230)||(23506243-23506400)
chr1 (19-127)||(26853912-26854015)
chr1 (71-227)||(25730944-25731098)
chr1 (173-230)||(50047654-50047711)
chr1 (82-144)||(25126927-25126989)
chr1 (82-230)||(15298362-15298507)
chr1 (79-135)||(27460460-27460516)
chr1 (172-230)||(30675992-30676050)
chr1 (76-138)||(31314018-31314080)
chr1 (170-224)||(34533194-34533248)
chr1 (168-201)||(11984740-11984773)
chr1 (168-230)||(23223940-23224000)
chr1 (160-230)||(14744936-14745006)
chr1 (170-230)||(11769492-11769552)
[»] chr8 (18 HSPs)
chr8 (28-230)||(11437828-11438023)
chr8 (84-229)||(30850545-30850687)
chr8 (22-230)||(18771355-18771556)
chr8 (71-230)||(28074957-28075114)
chr8 (82-230)||(24927346-24927491)
chr8 (172-225)||(23893663-23893716)
chr8 (82-123)||(26882745-26882786)
chr8 (187-230)||(12774354-12774397)
chr8 (71-142)||(23876409-23876480)
chr8 (108-230)||(13583103-13583223)
chr8 (82-143)||(5569746-5569806)
chr8 (160-218)||(14184489-14184549)
chr8 (168-201)||(24120821-24120854)
chr8 (80-197)||(27085094-27085207)
chr8 (182-223)||(28260038-28260079)
chr8 (112-144)||(15213326-15213358)
chr8 (41-142)||(30544171-30544269)
chr8 (81-141)||(32239744-32239804)
[»] chr7 (19 HSPs)
chr7 (9-230)||(24596486-24596700)
chr7 (71-230)||(5636673-5636830)
chr7 (82-225)||(4091983-4092123)
chr7 (22-144)||(4829251-4829368)
chr7 (160-230)||(9760654-9760724)
chr7 (170-230)||(9801106-9801166)
chr7 (80-230)||(9552621-9552770)
chr7 (174-230)||(5312269-5312325)
chr7 (82-230)||(18466987-18467132)
chr7 (71-144)||(22334859-22334932)
chr7 (170-230)||(17880433-17880493)
chr7 (163-230)||(15757981-15758048)
chr7 (84-123)||(21472264-21472303)
chr7 (100-194)||(21537072-21537164)
chr7 (79-138)||(30406048-30406107)
chr7 (82-123)||(20040415-20040456)
chr7 (82-123)||(20050568-20050609)
chr7 (84-124)||(7493762-7493802)
chr7 (81-123)||(7815788-7815830)
[»] chr3 (20 HSPs)
chr3 (9-230)||(26298188-26298402)
chr3 (23-230)||(19542582-19542783)
chr3 (9-230)||(18474611-18474827)
chr3 (71-202)||(21828720-21828848)
chr3 (82-143)||(11475335-11475396)
chr3 (71-227)||(22992177-22992331)
chr3 (29-144)||(20892091-20892202)
chr3 (71-194)||(19285565-19285684)
chr3 (162-230)||(10342312-10342380)
chr3 (170-229)||(14280781-14280840)
chr3 (81-207)||(19218708-19218830)
chr3 (71-142)||(22489654-22489725)
chr3 (76-135)||(26419223-26419282)
chr3 (79-141)||(33578232-33578294)
chr3 (168-228)||(8401897-8401957)
chr3 (175-230)||(22488359-22488414)
chr3 (81-119)||(11521658-11521696)
chr3 (172-230)||(28731155-28731212)
chr3 (182-230)||(18066245-18066293)
chr3 (182-230)||(21653949-21653997)
[»] chr6 (14 HSPs)
chr6 (71-230)||(22262847-22263003)
chr6 (173-230)||(13830394-13830454)
chr6 (168-230)||(16528213-16528275)
chr6 (163-230)||(1558327-1558394)
chr6 (82-137)||(32930051-32930106)
chr6 (76-137)||(28178470-28178531)
chr6 (84-144)||(17198380-17198440)
chr6 (109-228)||(26499347-26499463)
chr6 (71-201)||(12971876-12971998)
chr6 (76-138)||(10976648-10976710)
chr6 (160-230)||(15375990-15376060)
chr6 (177-230)||(19670104-19670157)
chr6 (182-223)||(30235866-30235907)
chr6 (76-144)||(9396175-9396243)
[»] scaffold0386 (2 HSPs)
scaffold0386 (81-227)||(11254-11397)
scaffold0386 (81-227)||(8224-8367)
[»] chr2 (20 HSPs)
chr2 (86-144)||(27917597-27917655)
chr2 (82-230)||(18819158-18819303)
chr2 (22-230)||(25460349-25460544)
chr2 (71-142)||(39732125-39732196)
chr2 (71-230)||(17884055-17884210)
chr2 (71-141)||(31262427-31262497)
chr2 (160-230)||(31274387-31274457)
chr2 (168-224)||(27416757-27416813)
chr2 (170-213)||(9504477-9504520)
chr2 (170-213)||(9515843-9515886)
chr2 (81-119)||(25474485-25474523)
chr2 (83-144)||(24188492-24188548)
chr2 (95-230)||(14921579-14921710)
chr2 (170-226)||(18235806-18235862)
chr2 (174-230)||(21504069-21504125)
chr2 (76-200)||(22511347-22511470)
chr2 (76-119)||(31274322-31274365)
chr2 (71-137)||(15454082-15454147)
chr2 (71-144)||(17862856-17862928)
chr2 (174-230)||(20518750-20518806)
[»] chr5 (19 HSPs)
chr5 (9-144)||(23157359-23157490)
chr5 (71-218)||(18281714-18281859)
chr5 (80-230)||(19763382-19763529)
chr5 (71-230)||(20695097-20695253)
chr5 (9-142)||(25368048-25368177)
chr5 (71-228)||(18178607-18178760)
chr5 (80-230)||(31340842-31340987)
chr5 (76-144)||(7742459-7742527)
chr5 (170-230)||(22930528-22930588)
chr5 (168-230)||(17381495-17381557)
chr5 (81-123)||(23125496-23125538)
chr5 (82-123)||(22755442-22755483)
chr5 (84-123)||(22230229-22230268)
chr5 (171-225)||(16622134-16622188)
chr5 (180-230)||(20084070-20084120)
chr5 (182-230)||(12265095-12265143)
chr5 (71-143)||(17695027-17695099)
chr5 (182-230)||(24842259-24842307)
chr5 (170-230)||(25594144-25594204)
[»] scaffold0011 (1 HSPs)
scaffold0011 (172-225)||(227694-227747)
[»] scaffold0190 (1 HSPs)
scaffold0190 (71-225)||(11162-11313)
[»] scaffold0186 (1 HSPs)
scaffold0186 (169-230)||(33235-33296)
[»] scaffold0103 (1 HSPs)
scaffold0103 (81-123)||(37168-37210)


Alignment Details
Target: scaffold0065 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 12674 - 12903
Alignment:
Q  1 ggagttgctgttttccaggccgttttgggtggaaaaaccctattttcactctcttaattaacccccaaaataattatgcactataaatagagacccttgc 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  12674 ggagttgctgttttccaagccgttttgggtggaaaaaccctattttcactctcttaattaacccctaaagtaattatgcactataaatagagacccttgc 12773  T
Q  101 acactagtttattcattcagaaagctagcggtacaaggcaaggggtcaaagcagcatcggcttcaaagcagaggatctccatcctcctcttgttctctct 200  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  12774 acaccagtttattcattcagaaagctagcggtacaaggcaagggttcaaagcatcatcggcttcaaagcagaggatctccatcctcctcttgttctctct 12873  T
Q  201 agagtatgattttctattattttgtaatga 230  Q
    |||| |||||||||||||||||||||||||    
T  12874 agagaatgattttctattattttgtaatga 12903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 32 - 230
Target Start/End: Original strand, 3573 - 3770
Alignment:
Q  32 gaaaaaccctattttcactctcttaattaacccccaaaataattatgcactataaatagagacccttgcacactagtttattcattcagaaagctagcgg 131  Q
    ||||||||||||||||||||||||||||| |||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  3573 gaaaaaccctattttcactctcttaattatcccctaag-taattatgcactataaatagagacccttgcacactagtttattcattcataaaactagcgg 3671  T
Q  132 tacaaggcaaggggtcaaagcagcatcggcttcaaagcagaggatctccatcctcctcttgttctctctagagtatgattttctattattttgtaatga 230  Q
    |||| || ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  3672 tacagggtaaggggtcagagcatcatcggcttcaaagcagaggatctccatcctcctcttgttctctctagagaatgattttctattattttgtaatga 3770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 9 - 230
Target Start/End: Original strand, 29437832 - 29438046
Alignment:
Q  9 tgttttccaggccgttttgggtggaaaaaccctattttcactctcttaattaacccccaaaataattatgcactataaatagagacccttgcacactagt 108  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||||     |||| || |||| ||||||||||||||||||| ||||||||||  |    
T  29437832 tgttttccaagccgtttttggtggaaaaaccctattttcactctcttaa-----cccctaagtaatcatgcactataaatagagactcttgcacactctt 29437926  T
Q  109 ttattcattcagaaagctagcggtacaaggcaaggggtcaaagcagcatcggcttcaaagcagaggatctccatcctcctcttgttctctctagagtatg 208  Q
     |||||||||||||| |||| |||||||||||| ||||| |||||  |   ||||||| |  ||||||||||||| | |||||||| ||||||| |||||    
T  29437927 gtattcattcagaaaactagtggtacaaggcaa-gggtc-aagcattaagagcttcaaggacgaggatctccatcattctcttgttatctctagggtatg 29438024  T
Q  209 attttctattattttgtaatga 230  Q
     ||||||||| |||||||||||    
T  29438025 tttttctattgttttgtaatga 29438046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 23 - 230
Target Start/End: Original strand, 19602200 - 19602400
Alignment:
Q  23 ttttgggtggaaaaaccctattttcactctcttaattaacccccaaaataattatgcactataaatagagacccttgcacactagtttattcattcagaa 122  Q
    |||| ||||||||| ||||||||||||||||||||     |||| || |||| ||||| |||||||||||||||||| |||||  ||| |||||||||||    
T  19602200 tttttggtggaaaacccctattttcactctcttaa-----ccccgaagtaatcatgcattataaatagagacccttgtacactctttttttcattcagaa 19602294  T
Q  123 agctagcggtacaaggcaaggggtcaaagcagcatcggcttcaaagcagaggatctccatcctcctcttgttctctctagagtatgattttctattattt 222  Q
    ||||||||||||||||||||||  | ||||| ||   ||||||| ||||||||| || ||| |||| ||||| |||| || ||||| ||||||||| |||    
T  19602295 agctagcggtacaaggcaaggg--ccaagcatcaggagcttcaaggcagaggatttctatcatccttttgttatctcgagggtatgtttttctattgttt 19602392  T
Q  223 tgtaatga 230  Q
    ||||||||    
T  19602393 tgtaatga 19602400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 71 - 143
Target Start/End: Original strand, 26160281 - 26160353
Alignment:
Q  71 taattatgcactataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaagg 143  Q
    ||||||||| |||||||||||||| ||||||||||  |||||||||||||||||||||||||||||| |||||    
T  26160281 taattatgccctataaatagagactcttgcacactcttttattcattcagaaagctagcggtacaagacaagg 26160353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 80 - 226
Target Start/End: Original strand, 13066207 - 13066352
Alignment:
Q  80 actataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaaggggtcaaagcagcatcg-gcttcaaagcagaggatct 178  Q
    ||||||||||||||| |||||  |||| ||||||||||||||||| |||||||| ||||||| | ||||||  | ||  |  |||||| ||| |||||||    
T  13066207 actataaatagagactcttgcgtactattttattcattcagaaagttagcggtataaggcaa-gagtcaaa-tatcaaggatcttcaaggcataggatct 13066304  T
Q  179 ccatcctcctcttgttctctctagagtatgattttctattattttgta 226  Q
    |||||||| | ||||||| ||||| ||||| ||||||| |||||||||    
T  13066305 ccatcctcgttttgttctttctagggtatgtttttctaatattttgta 13066352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 12028531 - 12028470
Alignment:
Q  76 atgcactataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaag 137  Q
    ||||||||||||||||||| ||||||||||  ||||||||||||||||| |||| |||||||    
T  12028531 atgcactataaatagagactcttgcacactcttttattcattcagaaagttagcagtacaag 12028470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 144
Target Start/End: Original strand, 33519508 - 33519572
Alignment:
Q  80 actataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaaggg 144  Q
    |||||||||| |||||||||||||||  |||||||||||||||| ||||| ||| ||||||||||    
T  33519508 actataaataaagacccttgcacactcttttattcattcagaaatctagcagtataaggcaaggg 33519572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 228
Target Start/End: Original strand, 4733168 - 4733325
Alignment:
Q  68 aaataattatgcactataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaaggggtcaaagcagcatcggcttcaaa 167  Q
    ||||||| ||| |||||||||||| ||||||| |||||  |||||||| |||||||||||   ||||||| ||| ||||||||   |     |||||||     
T  4733168 aaataatgatgtactataaatagaaacccttggacactgttttattcaatcagaaagctactagtacaagacaa-gggtcaaa--cgttagagcttcaag 4733264  T
Q  168 gcagaggatctccatcctcctcttgttctctctagagtatgattttctattattttgtaat 228  Q
    ||||| ||||||||||||| | ||||||| ||||  ||||| ||||||||| |||||||||    
T  4733265 gcagatgatctccatcctcttgttgttctttctaaggtatgtttttctattgttttgtaat 4733325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 230
Target Start/End: Original strand, 22120145 - 22120287
Alignment:
Q  85 aaatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaaggggtcaaagcagcatcggcttcaaagcagaggatctccatcc 184  Q
    ||||||||||||||||||||   |||||||||||||||  ||||| ||||||||||| ||||| ||||| |||  ||| ||| ||| | ||||| |||||    
T  22120145 aaatagagacccttgcacacacatttattcattcagaatactagctgtacaaggcaa-gggtc-aagcatcat-agctccaaggcatatgatctacatcc 22120241  T
Q  185 tcctcttgttctctctagagtatgattttctattattttgtaatga 230  Q
    |||| ||||| ||  ||| ||||| |||| |||||||||| |||||    
T  22120242 tccttttgttatcgttagggtatgtttttatattattttgcaatga 22120287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 10577022 - 10577082
Alignment:
Q  170 agaggatctccatcctcctcttgttctctctagagtatgattttctattattttgtaatga 230  Q
    ||||||||||| |||||||||||| |||||||| ||||| |||| |||| |||||||||||    
T  10577022 agaggatctccctcctcctcttgtcctctctagggtatgtttttatattgttttgtaatga 10577082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 144
Target Start/End: Original strand, 21077747 - 21077811
Alignment:
Q  80 actataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaaggg 144  Q
    ||||||||||||||||||||  |||||  ||||||||||| |||||||||| ||||||| |||||    
T  21077747 actataaatagagacccttgtccactatcttattcattcaaaaagctagcgatacaaggtaaggg 21077811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 82 - 150
Target Start/End: Complemental strand, 31859518 - 31859451
Alignment:
Q  82 tataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaaggggtcaaa 150  Q
    ||||| ||||||||||||||||||  |||||||||||||||| ||||  ||||||||| ||||||||||    
T  31859518 tataagtagagacccttgcacactcttttattcattcagaaaactagatgtacaaggc-aggggtcaaa 31859451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 125
Target Start/End: Original strand, 10576943 - 10576994
Alignment:
Q  74 ttatgcactataaatagagacccttgcacactagtttattcattcagaaagc 125  Q
    ||||||||||||||||||||||||||||||||| ||  |||||||| |||||    
T  10576943 ttatgcactataaatagagacccttgcacactatttggttcattcataaagc 10576994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 197
Target Start/End: Original strand, 23354066 - 23354178
Alignment:
Q  82 tataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaaggggtcaaagcagcatcggcttcaaagcagaggatctcca 181  Q
    |||||||| |||| || ||| |||  |||||||||||||||||| | | ||||||||||| || ||||| || ||  | |||||||||||||||||||||    
T  23354066 tataaataaagactctcgcaaactcttttattcattcagaaagccaacagtacaaggcaaagg-tcaaa-catcagag-cttcaaagcagaggatctcca 23354162  T
Q  182 tcctcctcttgttctc 197  Q
    ||||| ||||||||||    
T  23354163 tcctcatcttgttctc 23354178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 76 - 230
Target Start/End: Complemental strand, 7023870 - 7023718
Alignment:
Q  76 atgcactataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaaggggtcaaagcagcatcggcttcaaagcagagga 175  Q
    |||||||| ||||||||||| ||||||||   |||||||||| |||||| ||||  ||||||| || ||||| ||| | ||   ||||||  ||||| ||    
T  7023870 atgcactaaaaatagagaccattgcacacgcttttattcattgagaaagttagcaatacaagg-aaagggtc-aagtaccaggagcttcatggcagatga 7023773  T
Q  176 tctccatcctcctcttgttctctctagagtatgattttctattattttgtaatga 230  Q
    ||||||||||||| | ||| ||||||| ||||| |||| | || |||||||||||    
T  7023772 tctccatcctcctttcgttttctctagtgtatgtttttatgttgttttgtaatga 7023718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 26188314 - 26188370
Alignment:
Q  168 gcagaggatctccatcctcctcttgttctctctagagtatgattttctattattttgt 225  Q
    ||||||||||| ||||||||||||||||||| ||| ||||| ||||||||| ||||||    
T  26188314 gcagaggatcttcatcctcctcttgttctctatagggtatg-ttttctattgttttgt 26188370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 18444761 - 18444829
Alignment:
Q  162 ttcaaagcagaggatctccatcctcctcttgttctctctagagtatgattttctattattttgtaatga 230  Q
    ||||| || |||||||||||||||||||||||||||  ||| ||||| |||| | || |||||||||||    
T  18444761 ttcaaggcggaggatctccatcctcctcttgttctcattagggtatgtttttatgttgttttgtaatga 18444829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 230
Target Start/End: Original strand, 5676765 - 5676815
Alignment:
Q  180 catcctcctcttgttctctctagagtatgattttctattattttgtaatga 230  Q
    ||||||||||||||||| ||||  ||||| ||||||||| |||||||||||    
T  5676765 catcctcctcttgttctttctatggtatgtttttctattgttttgtaatga 5676815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 16441852 - 16441791
Alignment:
Q  81 ctataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaag 142  Q
    |||||||||||||||||||| ||||| | |||||||| |||||| | |  ||||||||||||    
T  16441852 ctataaatagagacccttgcgcactattatattcatttagaaagttggtagtacaaggcaag 16441791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 71 - 230
Target Start/End: Original strand, 21549116 - 21549273
Alignment:
Q  71 taattatgcactataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaaggggtcaaagcagcatcggcttcaaagca 170  Q
    |||| ||||| |||||||| |||||||||||||||  |||||||||||| ||| ||||| ||||||| ||| || |||| ||| ||    |||||| |||    
T  21549116 taatcatgcaatataaataaagacccttgcacactcttttattcattcaaaaatctagcagtacaagtcaatgg-tcaa-gcatcaggatcttcaaggca 21549213  T
Q  171 gaggatctccatcctcctcttgttctctctagagtatgattttctattattttgtaatga 230  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||    
T  21549214 gaggatctccatcctcctcttgttctctctagggtatgtttttctattgttttgtaatga 21549273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 71 - 230
Target Start/End: Original strand, 25778203 - 25778360
Alignment:
Q  71 taattatgcactataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaaggggtcaaagcagcatcggcttcaaagca 170  Q
    |||| |||||||||||||||||||| |||||||||  |||||||||| | |||| || | |||||||||||||| ||||| || |    ||||||| | |    
T  25778203 taataatgcactataaatagagacctttgcacactcttttattcatttataaagataacagtacaaggcaaggg-tcaaa-catctggagcttcaaggaa 25778300  T
Q  171 gaggatctccatcctcctcttgttctctctagagtatgattttctattattttgtaatga 230  Q
    ||| |||||||||||||||| ||||||||||| ||||| ||||||||| |||||||||||    
T  25778301 gagcatctccatcctcctctcgttctctctagggtatgtttttctattgttttgtaatga 25778360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 108 - 230
Target Start/End: Complemental strand, 52270832 - 52270712
Alignment:
Q  108 tttattcattcagaaagctagcggtacaaggcaaggggtcaaagcagcatcggcttcaaagcagaggatctccatcctcctcttgttctctctagagtat 207  Q
    |||||||||||||||||||||||||||||||||||||  | ||||| ||   ||||||  ||| ||||||| ||||||||||||||||||||||||  ||    
T  52270832 tttattcattcagaaagctagcggtacaaggcaaggg--ccaagcatcaggagcttcacggcaaaggatcttcatcctcctcttgttctctctagatgat 52270735  T
Q  208 gattttctattattttgtaatga 230  Q
    | ||||||||| |||||||||||    
T  52270734 gtttttctattgttttgtaatga 52270712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 76 - 202
Target Start/End: Complemental strand, 25665430 - 25665306
Alignment:
Q  76 atgcactataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaaggggtcaaagcagcatcggcttcaaagcagagga 175  Q
    ||||||| |||||||||||||||||||| |  || ||||||||| ||||||||| ||||||| ||| ||||| ||||| |||  ||||||| ||||| ||    
T  25665430 atgcactgtaaatagagacccttgcacaatttttaattcattcataaagctagcagtacaagacaa-gggtc-aagcatcatgagcttcaaggcagatga 25665333  T
Q  176 tctccatcctcctcttgttctctctag 202  Q
    |||||||||||||||||||||||||||    
T  25665332 tctccatcctcctcttgttctctctag 25665306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 71 - 230
Target Start/End: Original strand, 23506243 - 23506400
Alignment:
Q  71 taattatgcactataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaaggggtcaaagcagcatcggcttcaaagca 170  Q
    |||| |||||||||||||||||||||||| |||  | | ||||| ||||||||| |||| |||||||||||| | | |  |||  |   ||||| | |||    
T  23506243 taataatgcactataaatagagacccttggacagaattctattctttcagaaagttagcagtacaaggcaagtgttta--gcattaagagcttcgaggca 23506340  T
Q  171 gaggatctccatcctcctcttgttctctctagagtatgattttctattattttgtaatga 230  Q
      ||||||||||||||||||| |||||||||||| ||| ||||||||| |||||||||||    
T  23506341 tcggatctccatcctcctcttattctctctagagaatgtttttctattgttttgtaatga 23506400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 26854015 - 26853912
Alignment:
Q  19 gccgttttgggtggaaaaaccctattttcactctcttaattaacccccaaaataattatgcactataaatagagacccttgcacactagtttattcattc 118  Q
    |||||||| ||||||||||| ||||||||||| ||| ||     |||| || |||| || ||||||||||||||||||||| |||||| |||||||||||    
T  26854015 gccgtttttggtggaaaaacactattttcactatctcaa-----cccctaagtaatgatacactataaatagagacccttgaacactattttattcattc 26853921  T
Q  119 agaaagcta 127  Q
    |||||||||    
T  26853920 agaaagcta 26853912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 71 - 227
Target Start/End: Original strand, 25730944 - 25731098
Alignment:
Q  71 taattatgcactataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaaggggtcaaagcagcatcggcttcaaagca 170  Q
    |||| |||||||||||||||||||| ||||| |||  |||||||||| | |||| || | ||||||||||||||   ||| || ||   |||| || | |    
T  25730944 taataatgcactataaatagagacctttgcatactcttttattcatttataaagataacagtacaaggcaaggg--taaaacatcaggagcttaaaggaa 25731041  T
Q  171 gaggatctccatcctcctcttgttctctctagagtatgattttctattattttgtaa 227  Q
    |||||||| ||||||||||  ||||||||||| ||||| |||| |||| ||||||||    
T  25731042 gaggatcttcatcctcctcccgttctctctagggtatgtttttatattgttttgtaa 25731098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 173 - 230
Target Start/End: Original strand, 50047654 - 50047711
Alignment:
Q  173 ggatctccatcctcctcttgttctctctagagtatgattttctattattttgtaatga 230  Q
    |||||||||||||||||||||||||||||| ||||| |||| |||| |||||||||||    
T  50047654 ggatctccatcctcctcttgttctctctagggtatgtttttatattgttttgtaatga 50047711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 144
Target Start/End: Original strand, 25126927 - 25126989
Alignment:
Q  82 tataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaaggg 144  Q
    |||||||||||| ||||| |||||  |||||||||||| ||||||||| ||||||||||||||    
T  25126927 tataaatagagatccttgaacacttttttattcattcaaaaagctagcagtacaaggcaaggg 25126989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 82 - 230
Target Start/End: Complemental strand, 15298507 - 15298362
Alignment:
Q  82 tataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaaggggtcaaagcagcatcggcttcaaagcagaggatctcca 181  Q
    ||||||| |||||| || ||||||| ||||| |||| |||||||||||||||||| ||||  | ||||| || ||  |  | ||| ||||||||| | ||    
T  15298507 tataaattgagacctttccacactattttatccattaagaaagctagcggtacaacgcaattg-tcaaa-catcagagt-tccaaggcagaggatattca 15298411  T
Q  182 tcctcctcttgttctctctagagtatgattttctattattttgtaatga 230  Q
     |||||||||||||||||||| ||||| |||||| || |||||||||||    
T  15298410 ccctcctcttgttctctctagggtatgcttttcttttgttttgtaatga 15298362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 135
Target Start/End: Complemental strand, 27460516 - 27460460
Alignment:
Q  79 cactataaatagagacccttgcacactagtttattcattcagaaagctagcggtaca 135  Q
    |||||||||||||||||||| ||||||  ||||||| |||||||| |||||||||||    
T  27460516 cactataaatagagacccttacacactcttttattctttcagaaaactagcggtaca 27460460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 30675992 - 30676050
Alignment:
Q  172 aggatctccatcctcctcttgttctctctagagtatgattttctattattttgtaatga 230  Q
    ||||||||||||||||||||  ||||||||| ||||| ||||||||| |||||| ||||    
T  30675992 aggatctccatcctcctcttagtctctctagggtatgtttttctattgttttgttatga 30676050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 76 - 138
Target Start/End: Original strand, 31314018 - 31314080
Alignment:
Q  76 atgcactataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaagg 138  Q
    |||||||||||||||||| | |||  ||||  |||||| ||||||||||||||||||||||||    
T  31314018 atgcactataaatagagatcattgttcactcttttatttattcagaaagctagcggtacaagg 31314080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 224
Target Start/End: Original strand, 34533194 - 34533248
Alignment:
Q  170 agaggatctccatcctcctcttgttctctctagagtatgattttctattattttg 224  Q
    ||||||||| ||||||||||||||||||||||| ||||| ||||| ||| |||||    
T  34533194 agaggatcttcatcctcctcttgttctctctagggtatgtttttcgattgttttg 34533248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 201
Target Start/End: Complemental strand, 11984773 - 11984740
Alignment:
Q  168 gcagaggatctccatcctcctcttgttctctcta 201  Q
    ||||||||||||||||||||||||||||||||||    
T  11984773 gcagaggatctccatcctcctcttgttctctcta 11984740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 230
Target Start/End: Original strand, 23223940 - 23224000
Alignment:
Q  168 gcagaggatctccatcctcctcttgttctctctagagtatgattttctattattttgtaatga 230  Q
    ||||||||||| ||||||||||| ||  ||||||| ||||| ||||||||| |||||||||||    
T  23223940 gcagaggatcttcatcctcctctagt--tctctagggtatgtttttctattgttttgtaatga 23224000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 14745006 - 14744936
Alignment:
Q  160 gcttcaaagcagaggatctccatcctcctcttgttctctctagagtatgattttctattattttgtaatga 230  Q
    |||||||  |||| ||||| ||||||| ||||||||||||||   |||| ||||||||| |||||||||||    
T  14745006 gcttcaagacagatgatctgcatcctcttcttgttctctctatgatatgtttttctattgttttgtaatga 14744936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 11769552 - 11769492
Alignment:
Q  170 agaggatctccatcctcctcttgttctctctagagtatgattttctattattttgtaatga 230  Q
    |||||||||||||||||||||| |||||||||  || || |||| |||| |||||| ||||    
T  11769552 agaggatctccatcctcctctttttctctctatggtgtgtttttatattgttttgttatga 11769492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 6e-30; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 28 - 230
Target Start/End: Original strand, 11437828 - 11438023
Alignment:
Q  28 ggtggaaaaaccctattttcactctcttaattaacccccaaaataattatgcactataaatagagacccttgcacactagtttattcattcagaaagcta 127  Q
    |||||||||| | |||||||||||| ||||     |||| || |||| |||||  ||||||| ||||| || ||||||| |||||||||| |||||||||    
T  11437828 ggtggaaaaatcatattttcactctgttaa-----cccctaagtaatgatgcatcataaatatagaccattacacactattttattcatttagaaagcta 11437922  T
Q  128 gcggtacaaggcaaggggtcaaagcagcatcggcttcaaagcagaggatctccatcctcctcttgttctctctagagtatgattttctattattttgtaa 227  Q
    |  |||||||||||||| |||| ||| |||  |||||||||||||||||||||||||| |||||||||||| ||| ||||| |||| |||| | ||||||    
T  11437923 gtagtacaaggcaaggg-tcaa-gcatcatgagcttcaaagcagaggatctccatccttctcttgttctctgtagggtatgtttttttattgtcttgtaa 11438020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 84 - 229
Target Start/End: Complemental strand, 30850687 - 30850545
Alignment:
Q  84 taaatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaaggggtcaaagcagcatcggcttcaaagcagaggatctccatc 183  Q
    ||||||||||||| |||| | |  ||||||||||||||||||||||||||||||||||||| ||||| ||  |  |  || || ||||||||||||||||    
T  30850687 taaatagagacccatgcaaattcttttattcattcagaaagctagcggtacaaggcaaggg-tcaaa-cataagagattt-aaggcagaggatctccatc 30850591  T
Q  184 ctcctcttgttctctctagagtatgattttctattattttgtaatg 229  Q
    ||||| ||||||||||||| ||||| ||||||||| ||||||||||    
T  30850590 ctcctattgttctctctagggtatgtttttctattgttttgtaatg 30850545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 22 - 230
Target Start/End: Original strand, 18771355 - 18771556
Alignment:
Q  22 gttttgggtggaaaaaccctattttcactctcttaattaacccccaaaataattatgcactataaatagagacccttgcacactagtttattcattcaga 121  Q
    ||||| ||||||||| |||||||||||||||||||||     |||  | |||| || |||| | ||||||||||||||||||||  |||||||||| |||    
T  18771355 gtttttggtggaaaacccctattttcactctcttaat-----ccctcagtaatcatacactcttaatagagacccttgcacactcttttattcatttaga 18771449  T
Q  122 aagctagcggtacaaggcaaggggtcaaagcagcatcggcttcaaagcagaggatctccatcctcctcttgttctctctagagtatgattttctattatt 221  Q
    || | | || |||||||||| || |||| ||| ||   ||||||| | ||| ||||||||||||| | ||||||||||||||||||  ||||||||| ||    
T  18771450 aatccatcgatacaaggcaatgg-tcaa-gcatcaggagcttcaaggtagatgatctccatcctcattttgttctctctagagtatctttttctattgtt 18771547  T
Q  222 ttgtaatga 230  Q
    |||||||||    
T  18771548 ttgtaatga 18771556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 71 - 230
Target Start/End: Original strand, 28074957 - 28075114
Alignment:
Q  71 taattatgcactataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaaggggtcaaagcagcatcggcttcaaagca 170  Q
    ||||||||||||||||||||||||| ||| |||||| ||||||||||||||| |||||| ||| ||| ||| |||||||| || |||   ||| |  |||    
T  28074957 taattatgcactataaatagagacctttgtacactattttattcattcagaaggctagcagtataagacaa-gggtcaaa-catcat-aactttatggca 28075053  T
Q  171 gaggatctccatcctcctcttgttctctctagagtatg-attttctattattttgtaatga 230  Q
    ||||||||| ||||||||||||||||  |||| |||||  |||| |||| |||||||||||    
T  28075054 gaggatctctatcctcctcttgttcttactagggtatgttttttatattgttttgtaatga 28075114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 82 - 230
Target Start/End: Complemental strand, 24927491 - 24927346
Alignment:
Q  82 tataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaaggggtcaaagcagcatcggcttcaaagcagaggatctcca 181  Q
    ||||||||||||||||||||||  | |||||||||||| | || ||| ||| ||||||||  | ||||| || ||   ||||||| |  |||||||| ||    
T  24927491 tataaatagagacccttgcacaa-attttattcattcatatagttagtggtccaaggcaaatg-tcaaa-caccaggagcttcaaggtggaggatcttca 24927395  T
Q  182 tcctcctcttgttctctctagagtatgattttctattattttgtaatga 230  Q
    |||||| |||||||||| ||| ||||| ||||||||| |||||||||||    
T  24927394 tcctccccttgttctctttagggtatgtttttctattgttttgtaatga 24927346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 23893663 - 23893716
Alignment:
Q  172 aggatctccatcctcctcttgttctctctagagtatgattttctattattttgt 225  Q
    ||||||||||||||||| ||||||||||||||||| | | ||||||| ||||||    
T  23893663 aggatctccatcctcctattgttctctctagagtaggttattctattgttttgt 23893716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 123
Target Start/End: Original strand, 26882745 - 26882786
Alignment:
Q  82 tataaatagagacccttgcacactagtttattcattcagaaa 123  Q
    ||||||||||||||||||| ||||| ||||||||||||||||    
T  26882745 tataaatagagacccttgcccactattttattcattcagaaa 26882786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 12774397 - 12774354
Alignment:
Q  187 ctcttgttctctctagagtatgattttctattattttgtaatga 230  Q
    ||||||||||||||||| |||| ||||||||| |||||||||||    
T  12774397 ctcttgttctctctagattatgtttttctattgttttgtaatga 12774354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 142
Target Start/End: Original strand, 23876409 - 23876480
Alignment:
Q  71 taattatgcactataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaag 142  Q
    |||| ||||||||||||||||||| ||| |||| |  |||||| ||| || |||||||||||| ||||||||    
T  23876409 taatgatgcactataaatagagacacttacacattcttttatttatttagcaagctagcggtataaggcaag 23876480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 230
Target Start/End: Complemental strand, 13583223 - 13583103
Alignment:
Q  108 tttattcattcagaaagctagcggtacaaggcaaggggtcaaagcagcatcggcttcaaagcagaggatctccatcctcctcttgttctctctagagtat 207  Q
    |||||||||||| |||||||| |||||||||||| ||||| || || ||   ||||||| || ||||||||||| |  |||||| |||| | ||| ||||    
T  13583223 tttattcattcataaagctagaggtacaaggcaa-gggtc-aaccatcaagagcttcaaggcggaggatctccaccaccctcttattctttgtagggtat 13583126  T
Q  208 gattttctattattttgtaatga 230  Q
    | ||||| ||| |||||||||||    
T  13583125 gtttttccattgttttgtaatga 13583103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 143
Target Start/End: Complemental strand, 5569806 - 5569746
Alignment:
Q  82 tataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaagg 143  Q
    ||||||||||||||||| |||||   |||||||||||||||| ||| |||| ||||||||||    
T  5569806 tataaatagagaccctt-cacacacttttattcattcagaaaactaacggttcaaggcaagg 5569746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 14184489 - 14184549
Alignment:
Q  160 gcttcaaagcagaggatctccatcctcctcttgt--tctctctagagtatgattttctatt 218  Q
    ||||||| | ||| |||||||||||||||||| |  ||||||||| |||||||||||||||    
T  14184489 gcttcaaggtagaagatctccatcctcctcttattctctctctagggtatgattttctatt 14184549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 201
Target Start/End: Original strand, 24120821 - 24120854
Alignment:
Q  168 gcagaggatctccatcctcctcttgttctctcta 201  Q
    |||||||||||| |||||||||||||||||||||    
T  24120821 gcagaggatctctatcctcctcttgttctctcta 24120854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 197
Target Start/End: Complemental strand, 27085207 - 27085094
Alignment:
Q  80 actataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaaggggtcaaagcagcatcggcttcaaagcagaggatctc 179  Q
    ||||||||||||||||| ||||||||  |||||||||| | ||||||   |||||||| |||||| |||| ||| ||    ||||||  |||||||||||    
T  27085207 actataaatagagacccctgcacactcttttattcatttaaaaagctta-ggtacaagtcaaggg-tcaa-gcatcaaaa-cttcaagacagaggatctc 27085112  T
Q  180 catcctcctcttgttctc 197  Q
    ||||||||||||||||||    
T  27085111 catcctcctcttgttctc 27085094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 28260079 - 28260038
Alignment:
Q  182 tcctcctcttgttctctctagagtatgattttctattatttt 223  Q
    ||||||||||||||||||||  ||||| ||||||||||||||    
T  28260079 tcctcctcttgttctctctatggtatgtttttctattatttt 28260038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 144
Target Start/End: Complemental strand, 15213358 - 15213326
Alignment:
Q  112 ttcattcagaaagctagcggtacaaggcaaggg 144  Q
    ||||||||||||||||||||| |||||||||||    
T  15213358 ttcattcagaaagctagcggttcaaggcaaggg 15213326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 142
Target Start/End: Original strand, 30544171 - 30544269
Alignment:
Q  41 tattttcactctcttaattaacccccaaaataattatgcactataaatagagacccttgcacactagtttattcattcagaaa--gctagcggtacaagg 138  Q
    |||||||||||||||||     |||| || |||| || ||||||||||||||| | |||||||||  |||||||||| |||||  ||||| ||| |||||    
T  30544171 tattttcactctcttaa-----cccctaagtaatcatacactataaatagagatcattgcacactcttttattcatttagaaaaggctagtggttcaagg 30544265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 141
Target Start/End: Original strand, 32239744 - 32239804
Alignment:
Q  81 ctataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaa 141  Q
    |||||||| |||||||||||||||    ||||| |||||||||||||||||| ||| ||||    
T  32239744 ctataaattgagacccttgcacacattattatttattcagaaagctagcggttcaatgcaa 32239804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 9 - 230
Target Start/End: Complemental strand, 24596700 - 24596486
Alignment:
Q  9 tgttttccaggccgttttgggtggaaaaaccctattttcactctcttaattaacccccaaaataattatgcactataaatagagacccttgcacactagt 108  Q
    ||||||||| ||| |||| |||||||||  |||||||||||| ||||||     |||  | ||||| ||||| |||||||||||||| |||||||||  |    
T  24596700 tgttttccaagccatttttggtggaaaactcctattttcactatcttaa-----cccgtatataatcatgcattataaatagagaccattgcacactctt 24596606  T
Q  109 ttattcattcagaaagctagcggtacaaggcaaggggtcaaagcagcatcggcttcaaagcagaggatctccatcctcctcttgttctctctagagtatg 208  Q
    ||||||||||||||||||   ||||||||||||||| |||| ||| ||   ||||||| ||||| |||||| ||| |||||||||||||||||| |||||    
T  24596605 ttattcattcagaaagctgatggtacaaggcaaggg-tcaa-gcatcaggagcttcaaggcagatgatctctatcatcctcttgttctctctagtgtatg 24596508  T
Q  209 attttctattattttgtaatga 230  Q
     |||| |||| |||| ||||||    
T  24596507 tttttatattgttttataatga 24596486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 71 - 230
Target Start/End: Original strand, 5636673 - 5636830
Alignment:
Q  71 taattatgcactataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaaggggtcaaagcagcatcggcttcaaagca 170  Q
    |||| |||||||||||||||||||||||||||||   |||||||||||||||||||||  |||||||||||  |||| ||||| ||   ||||||| |||    
T  5636673 taatgatgcactataaatagagacccttgcacacacttttattcattcagaaagctagtagtacaaggcaa-tggtc-aagcatca-aagcttcaaggca 5636769  T
Q  171 gaggatctccatcctcctcttgttctctctagagtatgattttc-tattattttgtaatga 230  Q
    || |||||||| |||||||||||||||||||| ||||  ||||| |||| |||||||||||    
T  5636770 gatgatctccaacctcctcttgttctctctagggtatttttttcttattgttttgtaatga 5636830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 82 - 225
Target Start/End: Complemental strand, 4092123 - 4091983
Alignment:
Q  82 tataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaaggggtcaaagcagcatcggcttcaaagcagaggatctcca 181  Q
    ||||||||||||||||| |||||    ||||||||||||||||||||||||  |||||||||| |||| ||| ||  || | ||| ||||||||||||||    
T  4092123 tataaatagagaccctttcacacattattattcattcagaaagctagcggttgaaggcaaggg-tcaa-gcatcagaggttccaaggcagaggatctcca 4092026  T
Q  182 tcctcctcttgttctctctagagtatgattttctattattttgt 225  Q
    || |||||||||||||||||| ||||| ||||||||| ||||||    
T  4092025 tcttcctcttgttctctctag-gtatgtttttctattgttttgt 4091983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 144
Target Start/End: Original strand, 4829251 - 4829368
Alignment:
Q  22 gttttgggtggaaaaaccctattttcactctcttaattaacccccaaaataattatgcactataaatagagacccttgcacactagtttattcattcaga 121  Q
    ||||| ||||||||||| ||||||||||||||||||     |||| || || | || |||||| ||||||||| | |||||| || |||||||||| |||    
T  4829251 gtttttggtggaaaaactctattttcactctcttaa-----cccctaagtagtcatccactatgaatagagactcatgcacattattttattcatttaga 4829345  T
Q  122 aagctagcggtacaaggcaaggg 144  Q
    |||||||||||||||||||||||    
T  4829346 aagctagcggtacaaggcaaggg 4829368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 9760654 - 9760724
Alignment:
Q  160 gcttcaaagcagaggatctccatcctcctcttgttctctctagagtatgattttctattattttgtaatga 230  Q
    ||||||| | ||||||||||||||||||| ||||||||||||  ||||| |||||||||||||||||||||    
T  9760654 gcttcaaggaagaggatctccatcctcctattgttctctctaaggtatgtttttctattattttgtaatga 9760724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 9801106 - 9801166
Alignment:
Q  170 agaggatctccatcctcctcttgttctctctagagtatgattttctattattttgtaatga 230  Q
    ||||||||||||||||||||||||||||||||| || || ||||| |||||||||||||||    
T  9801106 agaggatctccatcctcctcttgttctctctagggtgtgtttttcaattattttgtaatga 9801166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 80 - 230
Target Start/End: Original strand, 9552621 - 9552770
Alignment:
Q  80 actataaatagagacccttgcacactagtttattcattcagaaagctagcggta-caaggcaaggggtcaaagcagcatcggcttcaaagcagaggatct 178  Q
    |||| ||||||||||| ||||||||   || | ||||||||||| ||| ||||  ||||||||||| |||| ||| ||   ||||||| | |||||||||    
T  9552621 actacaaatagagaccgttgcacacactttaactcattcagaaaactaacggtggcaaggcaaggg-tcaa-gcatcaagagcttcaaggaagaggatct 9552718  T
Q  179 ccatcctcctcttgttctctctagagtatgattttctattattttgtaatga 230  Q
    ||||| |||||||||||||||||| ||||  |||||||||||||||| ||||    
T  9552719 ccatcatcctcttgttctctctagggtatatttttctattattttgtgatga 9552770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 5312325 - 5312269
Alignment:
Q  174 gatctccatcctcctcttgttctctctagagtatgattttctattattttgtaatga 230  Q
    ||||||||||||||||||||||||||||| ||||| ||||| ||| |||||||||||    
T  5312325 gatctccatcctcctcttgttctctctagggtatgtttttcaattgttttgtaatga 5312269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 230
Target Start/End: Original strand, 18466987 - 18467132
Alignment:
Q  82 tataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaaggggtcaaagcagcatcggcttcaaagcagaggatctcca 181  Q
    |||||||||||||| |||||||||| |||||||||| ||||||||| ||||||||| |||  |||| ||| | |||  ||||||| | ||||||| |||     
T  18466987 tataaatagagacctttgcacactattttattcattgagaaagctaacggtacaagacaa-aggtc-aagaatcat-agcttcaaggtagaggatttccc 18467083  T
Q  182 tcctcctcttgttctctctagagtatgattttctattattttgtaatga 230  Q
    ||||||||||| | || || | ||||  ||||||||| |||||||||||    
T  18467084 tcctcctcttgctttcactggggtatatttttctattgttttgtaatga 18467132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 144
Target Start/End: Complemental strand, 22334932 - 22334859
Alignment:
Q  71 taattatgcactataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaaggg 144  Q
    |||| |||||||||||||| ||| | ||| |||||  |||||| |||||||||||||| |||||||||||||||    
T  22334932 taatgatgcactataaataaagatcattgaacactcttttattaattcagaaagctagtggtacaaggcaaggg 22334859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 17880493 - 17880433
Alignment:
Q  170 agaggatctccatcctcctcttgttctctctagagtatgattttctattattttgtaatga 230  Q
    ||||||||||||||||||| ||||||||||||  ||||| |||  ||||||||||||||||    
T  17880493 agaggatctccatcctcctattgttctctctatggtatgttttattattattttgtaatga 17880433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 15757981 - 15758048
Alignment:
Q  163 tcaaagcagaggatctccatcctcctcttgttctctctagagtatgattttctattattttgtaatga 230  Q
    |||| ||||||||||| |||| |||||||||| |||||||  |||  |||||||||||||||||||||    
T  15757981 tcaaggcagaggatcttcatcatcctcttgttatctctaggatatatttttctattattttgtaatga 15758048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 123
Target Start/End: Original strand, 21472264 - 21472303
Alignment:
Q  84 taaatagagacccttgcacactagtttattcattcagaaa 123  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  21472264 taaatagagacccttgcacactattttattcattcagaaa 21472303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 194
Target Start/End: Complemental strand, 21537164 - 21537072
Alignment:
Q  100 cacactagtttattcattcagaaagctagcggtacaaggcaaggggtcaaagcagcatcggcttcaaagcagaggatctccatcctcctcttgtt 194  Q
    ||||||| |||||||||||| |||||||||||||||||| |||||   |||||| ||   ||||||| | |||||||||||||| |||| |||||    
T  21537164 cacactattttattcattcaaaaagctagcggtacaaggaaagggt--aaagcatcaagagcttcaatggagaggatctccatcttcctgttgtt 21537072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 138
Target Start/End: Original strand, 30406048 - 30406107
Alignment:
Q  79 cactataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaagg 138  Q
    ||||||||||||| |||||||||||    |||||||||||| ||||||||||||||||||    
T  30406048 cactataaatagaaacccttgcacaaacttttattcattcataaagctagcggtacaagg 30406107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 123
Target Start/End: Complemental strand, 20040456 - 20040415
Alignment:
Q  82 tataaatagagacccttgcacactagtttattcattcagaaa 123  Q
    |||||||||||| |||||||||||| ||||||||||||||||    
T  20040456 tataaatagagatccttgcacactattttattcattcagaaa 20040415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 123
Target Start/End: Complemental strand, 20050609 - 20050568
Alignment:
Q  82 tataaatagagacccttgcacactagtttattcattcagaaa 123  Q
    |||||||||||||||||| |||||| ||||||||||||||||    
T  20050609 tataaatagagacccttgtacactattttattcattcagaaa 20050568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 124
Target Start/End: Original strand, 7493762 - 7493802
Alignment:
Q  84 taaatagagacccttgcacactagtttattcattcagaaag 124  Q
    ||||||||||| ||||||||||| |||||||||||||||||    
T  7493762 taaatagagactcttgcacactattttattcattcagaaag 7493802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 7815788 - 7815830
Alignment:
Q  81 ctataaatagagacccttgcacactagtttattcattcagaaa 123  Q
    |||||||||||||| ||||||||||| |||||||||| |||||    
T  7815788 ctataaatagagacacttgcacactattttattcattaagaaa 7815830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 9 - 230
Target Start/End: Original strand, 26298188 - 26298402
Alignment:
Q  9 tgttttccaggccgttttgggtggaaaaaccctattttcactctcttaattaacccccaaaataattatgcactataaatagagacccttgcacactagt 108  Q
    ||||||||| || ||||| |||| ||||||| ||||||| |||||||||     |||| ||  ||| ||||| ||||||||||||| ||||||||||  |    
T  26298188 tgttttccaagctgtttttggtgaaaaaaccttattttccctctcttaa-----cccctaaggaatcatgcattataaatagagactcttgcacactctt 26298282  T
Q  109 ttattcattcagaaagctagcggtacaaggcaaggggtcaaagcagcatcggcttcaaagcagaggatctccatcctcctcttgttctctctagagtatg 208  Q
    ||||| ||| |||||||||| | |||||| |||||| |||| ||| |||  ||||||| | ||||||||| ||||||||||||||| |||||  ||||||    
T  26298283 ttattaattgagaaagctagtgctacaagtcaaggg-tcaa-gcatcatgagcttcaaggaagaggatcttcatcctcctcttgttgtctctcaagtatg 26298380  T
Q  209 attttctattattttgtaatga 230  Q
     | ||||||| |||||||||||    
T  26298381 ttattctattgttttgtaatga 26298402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 23 - 230
Target Start/End: Complemental strand, 19542783 - 19542582
Alignment:
Q  23 ttttgggtggaaaaaccctattttcactctcttaattaacccccaaaataattatgcactataaatagagacccttgcacactagtttattcattcagaa 122  Q
    |||| ||||||||||||||||||||||||||||||    ||||  | || || ||||| ||||||||||||| | || |||||  || |||||||| |||    
T  19542783 tttttggtggaaaaaccctattttcactctcttaa----ccccgtatatgatcatgcattataaatagagacacatgaacactctttcattcattctgaa 19542688  T
Q  123 agctagcggtacaaggcaaggggtcaaagcagcatcggcttcaaagcagaggatctccatcctcctcttgttctctctagagtatgattttctattattt 222  Q
    |||| | |||||||||||| ||||| |||||  ||  | || || |||||| |||||||||||||||||||||||||||| ||||  ||||||| || ||    
T  19542687 agcttgaggtacaaggcaa-gggtc-aagcattataagttttaaggcagagtatctccatcctcctcttgttctctctagggtatatttttctactagtt 19542590  T
Q  223 tgtaatga 230  Q
    | ||||||    
T  19542589 tataatga 19542582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 230
Target Start/End: Original strand, 18474611 - 18474827
Alignment:
Q  9 tgttttccaggccgttttgggtggaaaaaccctattttcactctcttaattaacccccaaaataattatgcactataaatagagacccttgcacactagt 108  Q
    ||||||||| | |||| | ||||||||| |||||||||||||||||||||   ||||| |  |||| || || |||||||||||||   || |||||  |    
T  18474611 tgttttccaaggcgttcttggtggaaaacccctattttcactctcttaat---ccccctacgtaatcatccattataaatagagacaaatgaacactctt 18474707  T
Q  109 ttattcattcagaaagctagcggtacaaggcaaggggtcaaagcagcatcggcttcaaagcagaggatctccatcctcctcttgttctctctagagtatg 208  Q
    | |||||||| ||||||||| |||||||||||| ||||| ||||| ||   | ||||| |||||| ||||||||||||||||| ||||||| || || |     
T  18474708 tcattcattctgaaagctagaggtacaaggcaa-gggtc-aagcatcaggagtttcaaggcagagtatctccatcctcctcttattctctccagggttta 18474805  T
Q  209 attttctattattttgtaatga 230  Q
     |||||||||  ||||||||||    
T  18474806 tttttctattggtttgtaatga 18474827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 71 - 202
Target Start/End: Complemental strand, 21828848 - 21828720
Alignment:
Q  71 taattatgcactataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaaggggtcaaagcagcatcggcttcaaagca 170  Q
    |||| ||| |||||||||||||||||||| ||| |  |||||||||||||||||||||||| |||| |||| ||||| |||||  |   ||||||| |||    
T  21828848 taatgatgaactataaatagagacccttgtacattcatttattcattcagaaagctagcggcacaatgcaa-gggtc-aagca-taagagcttcaaggca 21828752  T
Q  171 gaggatctccatcctcctcttgttctctctag 202  Q
     |||||||||||| ||||||||||||||||||    
T  21828751 aaggatctccatcttcctcttgttctctctag 21828720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 82 - 143
Target Start/End: Original strand, 11475335 - 11475396
Alignment:
Q  82 tataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaagg 143  Q
    ||||||||||||| ||||||||||  ||||||||||||||||||||||||| ||||||||||    
T  11475335 tataaatagagactcttgcacactcttttattcattcagaaagctagcggtgcaaggcaagg 11475396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 71 - 227
Target Start/End: Complemental strand, 22992331 - 22992177
Alignment:
Q  71 taattatgcactataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaaggggtcaaagcagcatcggcttcaaagca 170  Q
    |||| ||||||||||||||||||| ||| ||||||  ||| || ||| |||||  |||| |||||||||| ||||||||| || ||| | |||||| | |    
T  22992331 taatgatgcactataaatagagactcttccacactcttttgttgatttagaaacgtagcagtacaaggca-ggggtcaaaccatcatag-cttcaaggta 22992234  T
Q  171 gaggatctccatcctcctcttgttctctctagagtatgattttctattattttgtaa 227  Q
    ||||||||| |||||||||||||||||| || | |||| |||| | || ||||||||    
T  22992233 gaggatctctatcctcctcttgttctctttacaatatgtttttattttcttttgtaa 22992177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 144
Target Start/End: Original strand, 20892091 - 20892202
Alignment:
Q  29 gtggaaaaaccctattttcactctcttaattaacccccaaaataattatgcactataaatagagacccttgcacactagtttattcattcagaaagctag 128  Q
    ||||||||||||||||||||||| |||||    || || ||  ||| ||||||||||||||| ||  ||||||||||| ||||   ||||| ||||||||    
T  20892091 gtggaaaaaccctattttcactcccttaa----ccacctaagcaatcatgcactataaatagtgaatcttgcacactattttaactattcataaagctag 20892186  T
Q  129 cggtacaaggcaaggg 144  Q
    ||||||||||||||||    
T  20892187 cggtacaaggcaaggg 20892202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 71 - 194
Target Start/End: Original strand, 19285565 - 19285684
Alignment:
Q  71 taattatgcactataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaaggggtcaaagcagcatcg--gcttcaaag 168  Q
    |||| |||||||||||||| ||||| ||| |||||  ||||||||||||||||||||  |||||||||||| ||||||||    |||||  ||||||| |    
T  19285565 taatgatgcactataaataaagacctttg-acactcttttattcattcagaaagctaatggtacaaggcaa-gggtcaaa----catcggagcttcaagg 19285658  T
Q  169 cagaggatctccatcctcctcttgtt 194  Q
    |||||||||| |||||||| ||||||    
T  19285659 cagaggatcttcatcctccgcttgtt 19285684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 10342312 - 10342380
Alignment:
Q  162 ttcaaagcagaggatctccatcctcctcttgttctctctagagtatgattttctattattttgtaatga 230  Q
    ||||| ||||| ||| ||||||||||||||||||||||||| ||||  |||||||||||||||| ||||    
T  10342312 ttcaaggcagatgatttccatcctcctcttgttctctctagggtatatttttctattattttgttatga 10342380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 14280840 - 14280781
Alignment:
Q  170 agaggatctccatcctcctcttgttctctctagagtatgattttctattattttgtaatg 229  Q
    ||||||||| ||||||||||||||||||||||| ||||| |||||||||  |||||||||    
T  14280840 agaggatctacatcctcctcttgttctctctagggtatgtttttctattgctttgtaatg 14280781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 81 - 207
Target Start/End: Complemental strand, 19218830 - 19218708
Alignment:
Q  81 ctataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaaggggtcaaagcagcatcggcttcaaagcagaggatctcc 180  Q
    ||||||||||||||||||| ||||    ||||||||| | ||||||| |||| |||| |||||| |||| ||| ||  |  ||||| |||||| ||||||    
T  19218830 ctataaatagagacccttgtacacattcttattcattaataaagctaacggttcaagacaaggg-tcaa-gcatcagag--ttcaaggcagagtatctcc 19218735  T
Q  181 atcctcctcttgttctctctagagtat 207  Q
    |||||||||||||||||||||||||||    
T  19218734 atcctcctcttgttctctctagagtat 19218708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 71 - 142
Target Start/End: Complemental strand, 22489725 - 22489654
Alignment:
Q  71 taattatgcactataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaag 142  Q
    |||| |||||||||||||||||||| |||||||||| ||||||||||   ||| ||||||||||||| ||||    
T  22489725 taatcatgcactataaatagagaccattgcacactattttattcattttaaaatctagcggtacaagacaag 22489654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 76 - 135
Target Start/End: Original strand, 26419223 - 26419282
Alignment:
Q  76 atgcactataaatagagacccttgcacactagtttattcattcagaaagctagcggtaca 135  Q
    |||||||||||||||||||||||  |||||| | ||||||||||||||| ||||||||||    
T  26419223 atgcactataaatagagacccttttacactattatattcattcagaaagatagcggtaca 26419282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 79 - 141
Target Start/End: Original strand, 33578232 - 33578294
Alignment:
Q  79 cactataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaa 141  Q
    |||||||||||||||| |||||||||   |||||||||| |||||||||||||| ||||||||    
T  33578232 cactataaatagagacacttgcacacacttttattcatttagaaagctagcggttcaaggcaa 33578294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 8401957 - 8401897
Alignment:
Q  168 gcagaggatctccatcctcctcttgttctctctagagtatgattttctattattttgtaat 228  Q
    ||||||||||| ||||||||||||||| ||||||| ||||| |||| |||| |||||||||    
T  8401957 gcagaggatcttcatcctcctcttgttatctctagggtatgtttttatattgttttgtaat 8401897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 230
Target Start/End: Complemental strand, 22488414 - 22488359
Alignment:
Q  175 atctccatcctcctcttgttctctctagagtatgattttctattattttgtaatga 230  Q
    ||||||||||||||||||||||||||||  |||| ||||| ||| |||||||||||    
T  22488414 atctccatcctcctcttgttctctctaggatatgtttttcaattgttttgtaatga 22488359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 81 - 119
Target Start/End: Original strand, 11521658 - 11521696
Alignment:
Q  81 ctataaatagagacccttgcacactagtttattcattca 119  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  11521658 ctataaatagagacccttgcacactattttattcattca 11521696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 28731212 - 28731155
Alignment:
Q  172 aggatctccatcctcctcttgttctctctagagtatgattttctattattttgtaatga 230  Q
    ||||||||||||||  |||||||||||||| | |||| ||||||||| |||||||||||    
T  28731212 aggatctccatccttttcttgttctctcta-aatatgtttttctattgttttgtaatga 28731155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 18066245 - 18066293
Alignment:
Q  182 tcctcctcttgttctctctagagtatgattttctattattttgtaatga 230  Q
    ||||||||||||||||| ||||||||  ||||||||| |||||| ||||    
T  18066245 tcctcctcttgttctctatagagtatctttttctattgttttgttatga 18066293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 21653949 - 21653997
Alignment:
Q  182 tcctcctcttgttctctctagagtatgattttctattattttgtaatga 230  Q
    ||||||| ||||||||||||| | ||| |||||| ||||||||||||||    
T  21653949 tcctccttttgttctctctagggcatgtttttctcttattttgtaatga 21653997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 71 - 230
Target Start/End: Original strand, 22262847 - 22263003
Alignment:
Q  71 taattatgcactataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaaggggtcaaagcagcatcggcttcaaagca 170  Q
    |||| |||||| |||||||||||| |||||||||   |||||||||| |||||||||||||| ||||||||||| |||| ||| ||| | |||||| | |    
T  22262847 taatgatgcaccataaatagagactcttgcacacacttttattcattgagaaagctagcggttcaaggcaaggg-tcaa-gcatcatag-cttcaaggta 22262943  T
Q  171 gaggatctccatcctcctcttgttctctctagagtatgattttctattattttgtaatga 230  Q
    ||||||| |||||||| |||| || ||||||  ||||| ||||||||| |||||||||||    
T  22262944 gaggatcgccatcctcttcttattttctctaatgtatgtttttctattgttttgtaatga 22263003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 173 - 230
Target Start/End: Complemental strand, 13830454 - 13830394
Alignment:
Q  173 ggatctccatcctcctcttgttctctctagagtatga---ttttctattattttgtaatga 230  Q
    |||||||||||||||||||||||||||||| ||||||   |||| ||||||||||||||||    
T  13830454 ggatctccatcctcctcttgttctctctagggtatgatttttttttattattttgtaatga 13830394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 168 - 230
Target Start/End: Original strand, 16528213 - 16528275
Alignment:
Q  168 gcagaggatctccatcctcctcttgttctctctagagtatgattttctattattttgtaatga 230  Q
    ||||||||||| ||||||||||||||||||||||| ||||| |||| |||| |||||| ||||    
T  16528213 gcagaggatcttcatcctcctcttgttctctctagggtatgtttttgtattgttttgttatga 16528275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 1558394 - 1558327
Alignment:
Q  163 tcaaagcagaggatctccatcctcctcttgttctctctagagtatgattttctattattttgtaatga 230  Q
    |||| ||||||||||| |||| |||||||||| |||||||  |||  |||||||||||||||||||||    
T  1558394 tcaaggcagaggatcttcatcatcctcttgttatctctaggatatatttttctattattttgtaatga 1558327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 137
Target Start/End: Complemental strand, 32930106 - 32930051
Alignment:
Q  82 tataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaag 137  Q
    ||||||||||||| |||||| ||   ||||||||||||||||||||||||||||||    
T  32930106 tataaatagagactcttgcatacacttttattcattcagaaagctagcggtacaag 32930051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 28178470 - 28178531
Alignment:
Q  76 atgcactataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaag 137  Q
    |||||||||||||| || | |||||  |||| ||||||||||||||||||||| ||||||||    
T  28178470 atgcactataaatataggctcttgccgactattttattcattcagaaagctagtggtacaag 28178531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 17198440 - 17198380
Alignment:
Q  84 taaatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaaggg 144  Q
    |||||||||||||||||| |||  |||||||||| | ||| |||||| |||||||||||||    
T  17198440 taaatagagacccttgcatactcttttattcatttataaaactagcgatacaaggcaaggg 17198380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 228
Target Start/End: Complemental strand, 26499463 - 26499347
Alignment:
Q  109 ttattcattcagaaagctagcggtacaaggcaaggggtcaaagcagcatcggcttcaaagcagaggatctccatcctcctcttgttctctctagagtatg 208  Q
    |||||||||||||||||||| || |||||||||||| |  ||||| ||    |||||| | | | ||||||||||||||||||||||||||||  |||||    
T  26499463 ttattcattcagaaagctagaggcacaaggcaagggtt--aagcatcagat-cttcaaggaaaatgatctccatcctcctcttgttctctctaaggtatg 26499367  T
Q  209 attttctattattttgtaat 228  Q
     |||| ||||  ||||||||    
T  26499366 tttttatattgctttgtaat 26499347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 201
Target Start/End: Complemental strand, 12971998 - 12971876
Alignment:
Q  71 taattatgcactataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaaggggtcaaagcagcatcggcttcaaagca 170  Q
    |||| |||||||||||||||||||||||||| |||  |||||||||| | |||| || || |||||| | | ||||||    || ||   |||||||| |    
T  12971998 taatgatgcactataaatagagacccttgcagactcttttattcattaataaagttaacgatacaagtc-atgggtca----agtat---cttcaaagaa 12971907  T
Q  171 gaggatctccatcctcctcttgttctctcta 201  Q
    || ||||| ||||||||||||||||||||||    
T  12971906 gacgatcttcatcctcctcttgttctctcta 12971876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 138
Target Start/End: Complemental strand, 10976710 - 10976648
Alignment:
Q  76 atgcactataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaagg 138  Q
    ||||||||||||||||||| || ||||||   |||||||||||||||| |||  |||||||||    
T  10976710 atgcactataaatagagactctggcacacacttttattcattcagaaaactattggtacaagg 10976648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 15375990 - 15376060
Alignment:
Q  160 gcttcaaagcagaggatctccatcctcctcttgttctctctagagtatgattttctattattttgtaatga 230  Q
    ||||||| ||||| |||||| ||||||  |||||||||||||| ||||| ||||| ||| ||||| |||||    
T  15375990 gcttcaaggcagacgatctcaatcctcaacttgttctctctagggtatgtttttcaattgttttgaaatga 15376060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 19670157 - 19670104
Alignment:
Q  177 ctccatcctcctcttgttctctctagagtatgattttctattattttgtaatga 230  Q
    ||||||||||| | |||||||||||| ||||| |||| ||||||||||| ||||    
T  19670157 ctccatcctccccctgttctctctagggtatgtttttatattattttgttatga 19670104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 30235907 - 30235866
Alignment:
Q  182 tcctcctcttgttctctctagagtatgattttctattatttt 223  Q
    ||||||||||||||||||||| ||||| ||||||||| ||||    
T  30235907 tcctcctcttgttctctctagggtatgtttttctattgtttt 30235866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 144
Target Start/End: Complemental strand, 9396243 - 9396175
Alignment:
Q  76 atgcactataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaaggg 144  Q
    |||||||||||||| |||| | |||||||    ||||||||||| |||| ||| |||||||||||||||    
T  9396243 atgcactataaatatagactcgtgcacacactcttattcattcaaaaagatagtggtacaaggcaaggg 9396175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 81 - 227
Target Start/End: Complemental strand, 11397 - 11254
Alignment:
Q  81 ctataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaaggggtcaaagcagcatcggcttcaaagcagaggatctcc 180  Q
    |||||||||||||||||||||||    |||||||||||||||||||| || ||||||||||||| |||| ||| ||  |  | ||| | ||||||| |||    
T  11397 ctataaatagagacccttgcacatatttttattcattcagaaagctaacgttacaaggcaaggg-tcaa-gcatcaaagt-tccaaggtagaggatatcc 11301  T
Q  181 atcctcctcttgttctctctagagtatgattttctattattttgtaa 227  Q
    |||||||||||||||||||||| ||||| ||||||||| ||||||||    
T  11300 atcctcctcttgttctctctagtgtatgtttttctattgttttgtaa 11254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 81 - 227
Target Start/End: Complemental strand, 8367 - 8224
Alignment:
Q  81 ctataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaaggggtcaaagcagcatcggcttcaaagcagaggatctcc 180  Q
    ||||||||||||||||||||| ||   ||||||||||||||||||||  | ||||| ||||||| |||| ||| ||  |  | ||| | ||||||| |||    
T  8367 ctataaatagagacccttgcagacatttttattcattcagaaagctaatgttacaacgcaaggg-tcaa-gcatcagagt-tccaaggtagaggatatcc 8271  T
Q  181 atcctcctcttgttctctctagagtatgattttctattattttgtaa 227  Q
    |||||||||||||||||||||| ||||| ||||||||| ||||||||    
T  8270 atcctcctcttgttctctctagtgtatgtttttctattgttttgtaa 8224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 9e-23; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 27917655 - 27917597
Alignment:
Q  86 aatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaaggg 144  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  27917655 aatagagacccttgcacactattttattcattcagaaagctagcggtacaaggcaaggg 27917597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 82 - 230
Target Start/End: Original strand, 18819158 - 18819303
Alignment:
Q  82 tataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaaggggtcaaagcagcatcggcttcaaagcagaggatctcca 181  Q
    |||||||||||||||||||| |||  |||||| ||||||||||||| |||||||||||||  ||||||| || ||   ||||| |  ||||||||||| |    
T  18819158 tataaatagagacccttgcaaactcttttatttattcagaaagctaacggtacaaggcaa-tggtcaaa-catca-aagcttccagacagaggatctcta 18819254  T
Q  182 tcctcctcttgttctctctagagtatgattttctattattttgtaatga 230  Q
    |||||||||||||||  |||| ||||| ||||||||| |||||||||||    
T  18819255 tcctcctcttgttcttactagggtatgtttttctattgttttgtaatga 18819303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 22 - 230
Target Start/End: Original strand, 25460349 - 25460544
Alignment:
Q  22 gttttgggtggaaaaaccctattttcactctcttaattaacccccaaaataattatgcactataaatagagacccttgcacactagtttattcattcaga 121  Q
    ||||| |||||||||||||||||||||||||||||||     ||| || |||| || ||||||||||||||||| || |||| |  |||||| |||||||    
T  25460349 gtttttggtggaaaaaccctattttcactctcttaat-----ccctaagtaatcatacactataaatagagaccttttcacaatcttttatttattcaga 25460443  T
Q  122 aagctagcgg-tacaaggcaaggggtcaaagcagcatcggcttcaaagcagaggatctccatcctcctcttgttctctctagagtatgattttctattat 220  Q
    ||||||  || ||||||||||||| |||||    |||| |     | ||| ||||| |||| | |||||||||||||||||| ||||| ||||||||| |    
T  25460444 aagctaatgggtacaaggcaaggg-tcaaa----catcagg----aggcaaaggatatccaccatcctcttgttctctctagtgtatgtttttctattgt 25460534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 71 - 142
Target Start/End: Original strand, 39732125 - 39732196
Alignment:
Q  71 taattatgcactataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaag 142  Q
    |||| ||||||||||||||||||| ||| |||||   |||||||||||||||||||||||||||||||||||    
T  39732125 taatgatgcactataaatagagactctttcacacacttttattcattcagaaagctagcggtacaaggcaag 39732196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 71 - 230
Target Start/End: Complemental strand, 17884210 - 17884055
Alignment:
Q  71 taattatgcactataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaaggggtcaaagcagcatcggcttcaaagca 170  Q
    |||||||| |||||||||||||||| |||||||    |||||||||| ||||||||||  ||||||||||| ||||| ||||| ||   | ||||| |||    
T  17884210 taattatg-actataaatagagaccattgcacatacttttattcatttagaaagctagtagtacaaggcaa-gggtc-aagcatca-gagattcaaggca 17884115  T
Q  171 gaggatctccatcctcctcttgttctctctagagtatgattttctattattttgtaatga 230  Q
    |||||| ||  || ||||||||| || ||||| ||||| ||||||||| |||||||||||    
T  17884114 gaggatttctgtcatcctcttgtcctttctagggtatgtttttctattgttttgtaatga 17884055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 71 - 141
Target Start/End: Original strand, 31262427 - 31262497
Alignment:
Q  71 taattatgcactataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaa 141  Q
    |||| ||||||||||||||||||| |||| |||||  |||||||||| ||||| ||| |||||||||||||    
T  31262427 taatgatgcactataaatagagacacttgtacactcttttattcatttagaaatctaacggtacaaggcaa 31262497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 31274387 - 31274457
Alignment:
Q  160 gcttcaaagcagaggatctccatcctcctcttgttctctctagagtatgattttctattattttgtaatga 230  Q
    ||||||| ||||| |||| ||| | |||||||||||||||||||||||  ||||||||| |||||||||||    
T  31274387 gcttcaaggcagatgatcgccaacttcctcttgttctctctagagtatatttttctattgttttgtaatga 31274457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 27416813 - 27416757
Alignment:
Q  168 gcagaggatctccatcctcctcttgttctctctagagtatgattttctattattttg 224  Q
    |||||||||||||||||||||||||||||||||   ||||| ||||||||| |||||    
T  27416813 gcagaggatctccatcctcctcttgttctctctgaggtatgcttttctattgttttg 27416757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 213
Target Start/End: Original strand, 9504477 - 9504520
Alignment:
Q  170 agaggatctccatcctcctcttgttctctctagagtatgatttt 213  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||    
T  9504477 agaggatctccatcctcctcttgttctctctagggtatgttttt 9504520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 213
Target Start/End: Original strand, 9515843 - 9515886
Alignment:
Q  170 agaggatctccatcctcctcttgttctctctagagtatgatttt 213  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||    
T  9515843 agaggatctccatcctcctcttgttctctctagggtatgttttt 9515886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 81 - 119
Target Start/End: Original strand, 25474485 - 25474523
Alignment:
Q  81 ctataaatagagacccttgcacactagtttattcattca 119  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  25474485 ctataaatagagacccttgcacactattttattcattca 25474523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 144
Target Start/End: Original strand, 24188492 - 24188548
Alignment:
Q  83 ataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaaggg 144  Q
    ||||||||||||||||||| ||     |||||||||| ||||||||||||||||||||||||    
T  24188492 ataaatagagacccttgcatac-----tattcattcaaaaagctagcggtacaaggcaaggg 24188548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 230
Target Start/End: Complemental strand, 14921710 - 14921579
Alignment:
Q  95 ccttgcacactagtttattcattcagaaagctagcggtacaaggcaaggggtcaaagcagcatcggcttcaaagcagaggatctccatcctcctcttgtt 194  Q
    |||||||||||  || |||||||||||| |||||||||| ||||||| || ||||  || ||   | ||||| ||||||||||  |||||| || |||||    
T  14921710 ccttgcacactctttgattcattcagaaggctagcggtaaaaggcaaagg-tcaat-catcacgagtttcaaggcagaggatc--catccttctattgtt 14921615  T
Q  195 ctctctagagtatgattttctattattttgtaatga 230  Q
    |||||||| ||||| ||||| ||| |||||||||||    
T  14921614 ctctctagggtatgtttttcaattgttttgtaatga 14921579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 226
Target Start/End: Complemental strand, 18235862 - 18235806
Alignment:
Q  170 agaggatctccatcctcctcttgttctctctagagtatgattttctattattttgta 226  Q
    ||||||||||||||||| |||| |||||||||  ||||| ||||||||| |||||||    
T  18235862 agaggatctccatcctcttcttattctctctatggtatgtttttctattgttttgta 18235806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 21504125 - 21504069
Alignment:
Q  174 gatctccatcctcctcttgttctctctagagtatgattttctattattttgtaatga 230  Q
    ||||| ||||||||| |||||| ||||| |||||| |||||||||||||| ||||||    
T  21504125 gatcttcatcctcctattgttcactctaaagtatgtttttctattattttataatga 21504069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 200
Target Start/End: Original strand, 22511347 - 22511470
Alignment:
Q  76 atgcactataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaaggggtcaaagcagcatcggcttcaaagcagagga 175  Q
    ||||| || |||||||| |||||| |||||  ||||||||||  |||||  ||||||| |||||||||| ||||| || ||   ||||| | | ||||||    
T  22511347 atgcattaaaaatagagtcccttgtacactcttttattcatttggaaagaaagcggtataaggcaaggg-tcaaaacatcaggagcttccaggtagagga 22511445  T
Q  176 tctccatcctcctcttgttctctct 200  Q
    ||||||||||| |||||||| ||||    
T  22511446 tctccatcctcttcttgttcactct 22511470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 119
Target Start/End: Original strand, 31274322 - 31274365
Alignment:
Q  76 atgcactataaatagagacccttgcacactagtttattcattca 119  Q
    ||||||||||||||||||||||||||| ||  ||||||||||||    
T  31274322 atgcactataaatagagacccttgcactctcttttattcattca 31274365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 137
Target Start/End: Complemental strand, 15454147 - 15454082
Alignment:
Q  71 taattatgcactataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaag 137  Q
    |||| ||| ||||||||| ||||||||||||||| | |||||||||| ||||| |||| ||||||||    
T  15454147 taatgatgaactataaatcgagacccttgcacac-actttattcatttagaaacctaggggtacaag 15454082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 144
Target Start/End: Original strand, 17862856 - 17862928
Alignment:
Q  71 taattatgcactataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaaggg 144  Q
    |||| |||||||||||||| ||||  ||||||||   ||||||||||||| ||| ||| |||||||||||||||    
T  17862856 taatgatgcactataaatatagacttttgcacacacttttattcattcag-aagttagtggtacaaggcaaggg 17862928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 20518806 - 20518750
Alignment:
Q  174 gatctccatcctcctcttgttctctctagagtatgattttctattattttgtaatga 230  Q
    |||||||||| |||| || || ||||||  ||||| |||||||||||||||||||||    
T  20518806 gatctccatcatccttttattttctctaaggtatgcttttctattattttgtaatga 20518750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 9 - 144
Target Start/End: Complemental strand, 23157490 - 23157359
Alignment:
Q  9 tgttttccaggccgttttgggtggaaaaaccctatttt-cactctcttaattaacccccaaaataattatgcactataaatagagacccttgcacactag 107  Q
    ||||||||| || ||||| ||||||||| || |||||| |||||||||||     |||| || |||| ||||| |||||| ||||||||||||||||||     
T  23157490 tgttttccaagctgttttaggtggaaaacccatatttttcactctcttaa-----cccctaagtaatcatgcattataaaaagagacccttgcacactat 23157396  T
Q  108 tttattcattcagaaagctagcggtacaaggcaaggg 144  Q
    ||||||||||||||||| | || ||||||||||||||    
T  23157395 tttattcattcagaaagttggcagtacaaggcaaggg 23157359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 71 - 218
Target Start/End: Complemental strand, 18281859 - 18281714
Alignment:
Q  71 taattatgcactataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaaggggtcaaagcagcatcggcttcaaagca 170  Q
    |||| ||||| ||||||||| ||||||||||||||  ||| |||||||||||||||||| || ||||||||   |||||| || ||   ||||||| | |    
T  18281859 taatcatgcaatataaatagtgacccttgcacactcttttcttcattcagaaagctagcagtgcaaggcaa-acgtcaaa-catcaggagcttcaaggta 18281762  T
Q  171 gaggatctccatcctcctcttgttctctctagagtatgattttctatt 218  Q
    ||||| ||||||| |||||||||||||||||| ||||  |||||||||    
T  18281761 gaggacctccatcgtcctcttgttctctctagggtatatttttctatt 18281714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 80 - 230
Target Start/End: Complemental strand, 19763529 - 19763382
Alignment:
Q  80 actataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaaggggtcaaagcagcatcggcttcaaagcagaggatctc 179  Q
    ||||||||||  |||||||  |||||  |||||||||||| |||||||| ||||||||||||||| ||||| || ||  | |||||| |||||||||||     
T  19763529 actataaatatggacccttatacactcttttattcattcaaaaagctagtggtacaaggcaaggg-tcaaa-catcaaag-cttcaaggcagaggatctt 19763433  T
Q  180 catcctcctcttgttctctctagagtatgattttctattattttgtaatga 230  Q
    |||||||||||||||||||| || ||| | ||||||||  |||| ||||||    
T  19763432 catcctcctcttgttctctcaagggtaagtttttctatatttttataatga 19763382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 71 - 230
Target Start/End: Original strand, 20695097 - 20695253
Alignment:
Q  71 taattatgcactataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaaggggtcaaagcagcatcg--gcttcaaag 168  Q
    |||| ||| ||||||||||||||| |||||| ||   || |||||||||||||||||| |||| ||||||| ||||||    |||||||   |||||| |    
T  20695097 taatgatgtactataaatagagactcttgcaaaccttttcattcattcagaaagctagtggtagaaggcaa-gggtca----agcatcgcaacttcaagg 20695191  T
Q  169 cagaggatctccatcctcctcttgttctctctagagtatgattttctattattttgtaatga 230  Q
    ||  |||||| ||||||| |||| |||||||||| ||||| ||||||||| |||||||||||    
T  20695192 caatggatcttcatcctcttctttttctctctagggtatgtttttctattgttttgtaatga 20695253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 142
Target Start/End: Original strand, 25368048 - 25368177
Alignment:
Q  9 tgttttccaggccgttttgggtggaaaaaccctattttcactctcttaattaacccccaaaataattatgcactataaatagagacccttgcacactagt 108  Q
    |||||| || ||| |||| ||||||||| ||||||||||||||||||||    |||   |  |||| |||||||||||||||||||| |||||||||| |    
T  25368048 tgtttttcaagccatttttggtggaaaacccctattttcactctcttaa----ccctgtacgtaatcatgcactataaatagagaccattgcacactatt 25368143  T
Q  109 ttattcattcagaaagctagcggtacaaggcaag 142  Q
    ||||||||| |||||| | ||| |||||| ||||    
T  25368144 ttattcatttagaaagttggcgttacaagacaag 25368177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 71 - 228
Target Start/End: Original strand, 18178607 - 18178760
Alignment:
Q  71 taattatgcactataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaaggggtcaaagcagcatcggcttcaaagca 170  Q
    |||| ||||| ||| ||||||||||||||||||||  |||||||||||| |||||||  ||||||||||||  ||||||| || ||   |||| || |      
T  18178607 taatgatgcaatatcaatagagacccttgcacacttttttattcattcaaaaagctaatggtacaaggcaa-tggtcaaa-catca-gagcttaaaggtg 18178703  T
Q  171 gaggatctccatcctcctcttgttctctctagagtatgattttctattattttgtaat 228  Q
    |||||||| ||||||||||||||||||||||| ||||  |||| |||| |||||||||    
T  18178704 gaggatcttcatcctcctcttgttctctctagggtat-tttttttattgttttgtaat 18178760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 80 - 230
Target Start/End: Complemental strand, 31340987 - 31340842
Alignment:
Q  80 actataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaaggggtcaaagcagcatcg--gcttcaaagcagaggatc 177  Q
    ||||||||||||||||||||||||||  |  |||||||| |||||||||   ||||| ||||||| |||||    |||||  ||||||| ||||||||||    
T  31340987 actataaatagagacccttgcacactcttaaattcattctgaaagctagatatacaaagcaaggg-tcaaa----catcgaagcttcaaggcagaggatc 31340893  T
Q  178 tccatcctcctcttgttctctctagagtatgattttctattattttgtaatga 230  Q
    || |||||| |||||||||||||    |||| ||||||||| |||||||||||    
T  31340892 tcaatcctcttcttgttctctct--tatatgtttttctattgttttgtaatga 31340842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 144
Target Start/End: Complemental strand, 7742527 - 7742459
Alignment:
Q  76 atgcactataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaaggg 144  Q
    ||||| ||||||||||||||||||||||||  |||| ||||||| |||| ||| |||||||||||||||    
T  7742527 atgcattataaatagagacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaaggg 7742459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 22930528 - 22930588
Alignment:
Q  170 agaggatctccatcctcctcttgttctctctagagtatgattttctattattttgtaatga 230  Q
    ||||||||||||||||||| ||||| |||||||  |||| ||||||||| |||||||||||    
T  22930528 agaggatctccatcctccttttgttatctctaggttatgtttttctattgttttgtaatga 22930588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 168 - 230
Target Start/End: Complemental strand, 17381557 - 17381495
Alignment:
Q  168 gcagaggatctccatcctcctcttgttctctctagagtatgattttctattattttgtaatga 230  Q
    ||||||||||||||||||||| ||||||||||||| |||||  ||| |||| |||| ||||||    
T  17381557 gcagaggatctccatcctccttttgttctctctagggtatgtatttatattgttttataatga 17381495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 23125538 - 23125496
Alignment:
Q  81 ctataaatagagacccttgcacactagtttattcattcagaaa 123  Q
    ||||||||||||||||||||||| || ||||||||||||||||    
T  23125538 ctataaatagagacccttgcacaatattttattcattcagaaa 23125496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 123
Target Start/End: Original strand, 22755442 - 22755483
Alignment:
Q  82 tataaatagagacccttgcacactagtttattcattcagaaa 123  Q
    ||||||||||||| ||||||||||| ||||||||||||||||    
T  22755442 tataaatagagactcttgcacactattttattcattcagaaa 22755483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 123
Target Start/End: Original strand, 22230229 - 22230268
Alignment:
Q  84 taaatagagacccttgcacactagtttattcattcagaaa 123  Q
    ||||||||||||||||||||||| |||||||||| |||||    
T  22230229 taaatagagacccttgcacactattttattcatttagaaa 22230268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 16622188 - 16622134
Alignment:
Q  171 gaggatctccatcctcctcttgttctctctagagtatgattttctattattttgt 225  Q
    |||| |||||||||| |||||||||||| ||| ||||| ||||||||| ||||||    
T  16622188 gagggtctccatccttctcttgttctctttagggtatgtttttctattgttttgt 16622134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 230
Target Start/End: Original strand, 20084070 - 20084120
Alignment:
Q  180 catcctcctcttgttctctctagagtatgattttctattattttgtaatga 230  Q
    |||| |||| ||||||||||||| ||||| |||| ||||||||||||||||    
T  20084070 catcatcctgttgttctctctagggtatgtttttatattattttgtaatga 20084120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 12265143 - 12265095
Alignment:
Q  182 tcctcctcttgttctctctagagtatgattttctattattttgtaatga 230  Q
    |||| |||||||||||||||| ||||  ||||||||| |||||||||||    
T  12265143 tccttctcttgttctctctagtgtatatttttctattgttttgtaatga 12265095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 143
Target Start/End: Complemental strand, 17695099 - 17695027
Alignment:
Q  71 taattatgcactataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaagg 143  Q
    |||| ||||||||||||||||||  ||||||| |   |||||||||||| |||| |||  |||||||||||||    
T  17695099 taatgatgcactataaatagagagtcttgcacgcacttttattcattcaaaaagttagatgtacaaggcaagg 17695027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 24842259 - 24842307
Alignment:
Q  182 tcctcctcttgttctctctagagtatgattttctattattttgtaatga 230  Q
    |||| ||||||||||||||| |||||| ||||||||| |||||| ||||    
T  24842259 tccttctcttgttctctctatagtatgcttttctattgttttgttatga 24842307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 25594204 - 25594144
Alignment:
Q  170 agaggatctccatcctcctcttgttctctctagagtatgattttctattattttgtaatga 230  Q
    ||||| ||| ||||||||||||||||||||||   |||| ||||||||| |||||| ||||    
T  25594204 agagggtcttcatcctcctcttgttctctctaagatatgtttttctattgttttgttatga 25594144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 227747 - 227694
Alignment:
Q  172 aggatctccatcctcctcttgttctctctagagtatgattttctattattttgt 225  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||    
T  227747 aggatctccatcctcctcttgttctctctagagtatgtttttcaattgttttgt 227694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 71 - 225
Target Start/End: Complemental strand, 11313 - 11162
Alignment:
Q  71 taattatgcactataaatagagacccttgcacactagtttattcattcagaaagctagcggtacaaggcaaggggtcaaagcagcatcggcttcaaagca 170  Q
    |||| ||| ||||||||||||||| ||||||||||  |||||||||||| |||||| |  |||||||||||||| |  ||||  ||   ||||||| |||    
T  11313 taatgatgtactataaatagagacacttgcacacttttttattcattcaaaaagcttgtagtacaaggcaagggtt--aagcttca-gagcttcaaggca 11217  T
Q  171 gaggatctccatcctcctcttgttctctctagagtatgattttctattattttgt 225  Q
    || ||| | |||||||||| |||||||||||  ||||  ||||||||| ||||||    
T  11216 gatgattttcatcctcctcatgttctctctaaggtatatttttctattgttttgt 11162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 33296 - 33235
Alignment:
Q  169 cagaggatctccatcctcctcttgttctctctagagtatgattttctattattttgtaatga 230  Q
    |||||||||||| ||||| | ||||||||||||||||||  ||||||||| |||||||||||    
T  33296 cagaggatctccgtcctcattttgttctctctagagtatctttttctattgttttgtaatga 33235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 37210 - 37168
Alignment:
Q  81 ctataaatagagacccttgcacactagtttattcattcagaaa 123  Q
    |||||||||||||||||||||| ||| |||||||||| |||||    
T  37210 ctataaatagagacccttgcacgctattttattcatttagaaa 37168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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