View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_6 (Length: 515)
Name: NF10145A_low_6
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 505
Target Start/End: Complemental strand, 40478281 - 40477772
Alignment:
| Q |
1 |
actataaaacatcattaaaatgtttgaatttatatgcatattcattttcattatttgaattagaagttaaaagtctttcctgaaaataaaattatcaaat |
100 |
Q |
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| T |
40478281 |
actataaaacatcattaaaatgtttgaatttatatgcatattcattttcattatttgaattagaagttacaagtctttcctgaaaataaaattatcaaat |
40478182 |
T |
|
| Q |
101 |
gctcaagagaattatgtttattcctcatccacaggatacaaaacatacctggtgaaaatcttctgcttcaatagtttctcaagttcggtcaatccacctt |
200 |
Q |
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| T |
40478181 |
gctcaagagaattatgtttattcctcatccacaggatacaaaacatacctggtgaaaatcttctgcttcaatagtttctcaagttcggtcaatccacctt |
40478082 |
T |
|
| Q |
201 |
gatccgagtcagaacaattaatttgaacattactttcaccaactgctctttgttgattgccagaagattcttttgcaacctgtttttcatataggaaatg |
300 |
Q |
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| T |
40478081 |
gatccgagtcagaacaattaacttgaacattactttcaccaactgctctttgttgattgccagaagattcttttgcaacctgtttttcatataggaaatg |
40477982 |
T |
|
| Q |
301 |
aaaaaacagtgagatatcaataataa--------cacagtttcaccaatcaataggtaacattgcagttccaatactcaatatataatatagcaaccaat |
392 |
Q |
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| T |
40477981 |
aaaaaacagtgagatatcaataataacacaataacacagtttcaccaatcaataggtaacattgcagttccaatactcaatatataatat---aaccaat |
40477885 |
T |
|
| Q |
393 |
agaaataaagattgatttcaaaagcagtgcaagccctccatgaaacacgcaacgagacgaatagaaactaacagaagacatttgatgaaacaatgcaggt |
492 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
40477884 |
agaaataaagattgatttcaaaagcagtgcaagccctccatgaaacacgcaactagacgaatagaaactaacaaaagacatttgaggaaacaatgcaggt |
40477785 |
T |
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| Q |
493 |
tacttaatagtat |
505 |
Q |
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| T |
40477784 |
tacttaatagtat |
40477772 |
T |
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