View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_60 (Length: 411)

Name: NF10145A_low_60
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_60
NF10145A_low_60
[»] chr8 (4 HSPs)
chr8 (3-409)||(43052602-43053024)
chr8 (239-298)||(2235643-2235702)
chr8 (208-267)||(5227528-5227587)
chr8 (203-276)||(8062317-8062390)
[»] chr1 (15 HSPs)
chr1 (200-298)||(10199395-10199493)
chr1 (203-284)||(34290224-34290305)
chr1 (200-298)||(4576790-4576888)
chr1 (200-298)||(7136985-7137083)
chr1 (200-278)||(45975675-45975753)
chr1 (208-276)||(5592694-5592762)
chr1 (243-298)||(25479609-25479664)
chr1 (197-283)||(38578509-38578596)
chr1 (218-276)||(16322852-16322910)
chr1 (207-272)||(4700079-4700144)
chr1 (197-258)||(33546480-33546541)
chr1 (197-277)||(836347-836427)
chr1 (243-295)||(16981926-16981978)
chr1 (240-300)||(20713681-20713741)
chr1 (197-298)||(38170677-38170780)
[»] chr2 (5 HSPs)
chr2 (197-284)||(39236496-39236583)
chr2 (244-298)||(43717123-43717177)
chr2 (197-266)||(1899923-1899992)
chr2 (208-276)||(7103491-7103560)
chr2 (197-278)||(12313180-12313261)
[»] chr5 (5 HSPs)
chr5 (218-298)||(17258870-17258950)
chr5 (202-278)||(41981872-41981948)
chr5 (202-298)||(2568645-2568741)
chr5 (206-262)||(6593290-6593346)
chr5 (251-295)||(41225088-41225132)
[»] chr4 (6 HSPs)
chr4 (197-262)||(3155585-3155650)
chr4 (197-278)||(25332756-25332838)
chr4 (197-262)||(53294137-53294202)
chr4 (218-262)||(20105453-20105497)
chr4 (208-276)||(33534178-33534246)
chr4 (243-283)||(55084483-55084523)
[»] chr7 (6 HSPs)
chr7 (202-298)||(752956-753052)
chr7 (190-262)||(39907778-39907850)
chr7 (197-266)||(12110342-12110411)
chr7 (197-266)||(43694589-43694658)
chr7 (200-276)||(15075094-15075170)
chr7 (244-296)||(33708432-33708484)
[»] chr3 (5 HSPs)
chr3 (244-288)||(24785290-24785334)
chr3 (203-262)||(30443881-30443940)
chr3 (211-298)||(40122740-40122827)
chr3 (243-293)||(24785233-24785283)
chr3 (202-279)||(28622005-28622082)
[»] scaffold0091 (1 HSPs)
scaffold0091 (208-267)||(6945-7004)
[»] chr6 (4 HSPs)
chr6 (203-278)||(9109258-9109333)
chr6 (247-278)||(33737774-33737805)
chr6 (243-283)||(28641751-28641791)
chr6 (193-277)||(35070475-35070559)


Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 3 - 409
Target Start/End: Complemental strand, 43053024 - 43052602
Alignment:
Q  3 tggttgaaggttaagaaaaaaggtttcacctttgatatgaatcattggtggaataatctcatgtcttgtttagggattaggattacttgatgtgattgtt 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  43053024 tggttgaaggttaagaaaaaaggtttcacctttgatatgaatcattggtggaataatctcatgtcttgtttagggattaggattaattgatgtgcttgtt 43052925  T
Q  103 gttgattttagtttgttatatttgaga-------------------gtgcgcttttccaatttaagcactgtgttatttcatgatatatcttttggcttc 183  Q
    |   |||||||||||||||||||||||                   ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  43052924 g---attttagtttgttatatttgagactcttttgtcatgctttgagtgcgcttttccaatttaagcactgtgttattttatgatatatcttttggcttc 43052828  T
Q  184 tccaaaaaggtttaattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaagatgt 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43052827 tccaaaaaggtttaattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaagatgt 43052728  T
Q  284 cctaaactattttcacattcctttactttaagtcattacaagactgacctacattgtcaagttgttagtgtttttcactaaaatgcccatacccacctgg 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43052727 cctaaactattttcacattcctttactttaagtcattacaagactgacctacattgtcaagttgttagtgtttttcactaaaatgcccatacccacctgg 43052628  T
Q  384 aaacccataactctctcaagaccttt 409  Q
    ||||||||||||||||||||||||||    
T  43052627 aaacccataactctctcaagaccttt 43052602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 239 - 298
Target Start/End: Complemental strand, 2235702 - 2235643
Alignment:
Q  239 ttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttca 298  Q
    |||||||||||||| |||| |||||||| | ||||||||| ||||| |||||||||||||    
T  2235702 ttaaagagcttatggaaatgagctaaaaacgacttatgaacatgtcataaactattttca 2235643  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 208 - 267
Target Start/End: Original strand, 5227528 - 5227587
Alignment:
Q  208 tataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaac 267  Q
    ||||||||| ||||||||||| ||| |||   | ||||||||||||||||||||||||||    
T  5227528 tataagctataagctgtttttgtaagctatcatgaagagcttatgaaaataagctaaaac 5227587  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 276
Target Start/End: Original strand, 8062317 - 8062390
Alignment:
Q  203 ttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatg 276  Q
    |||||||||||||| |||||||||| |||| |||  ||| |||| ||||| ||||||||| ||| || ||||||    
T  8062317 ttttgtataagctataagctgttttcataagctatcttagagagattatggaaataagctgaaaacatcttatg 8062390  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 200 - 298
Target Start/End: Complemental strand, 10199493 - 10199395
Alignment:
Q  200 tatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttca 298  Q
    |||||| |||||| | | ||||| |||| |||| ||| |||| |||||||||||||||||||| ||| ||||||||||| ||||| ||| |||||||||    
T  10199493 tattttcgtataatcgataagcttttttcataagctattttagagagcttatgaaaataagctgaaaacaacttatgaacatgtcataagctattttca 10199395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 203 - 284
Target Start/End: Original strand, 34290224 - 34290305
Alignment:
Q  203 ttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtc 284  Q
    |||||||||||||| |||||||||| |||| |||  || |||| |||||||||||||||| ||| ||||||||||| |||||    
T  34290224 ttttgtataagctataagctgttttcataagctatcttgaagaacttatgaaaataagctgaaaacaacttatgaatatgtc 34290305  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 298
Target Start/End: Original strand, 4576790 - 4576888
Alignment:
Q  200 tatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttca 298  Q
    |||||||||| ||| || |||||||||| |||| |||  || || | |||||||||||||||| ||  |||||||| || ||||| |||||||||||||    
T  4576790 tatttttgtacaagttataagctgttttcataagctatattgaataacttatgaaaataagctgaacacaacttataaacatgtcataaactattttca 4576888  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 298
Target Start/End: Complemental strand, 7137083 - 7136985
Alignment:
Q  200 tatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttca 298  Q
    ||||||||||||| ||| |||||||||| |||| |||  ||  ||| |||||||||||||||| |||  |||||||||| ||||| ||| | |||||||    
T  7137083 tatttttgtataatctataagctgttttcataagctatcttggagaacttatgaaaataagctgaaaataacttatgaatatgtcataagcgattttca 7136985  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 278
Target Start/End: Original strand, 45975675 - 45975753
Alignment:
Q  200 tatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaa 278  Q
    |||||||||||||||||||||||||||| |||| |||  ||  |||  ||||||||||||||| ||| || ||||||||    
T  45975675 tatttttgtataagctacaagctgttttcataagctatcttggagaatttatgaaaataagctgaaaacagcttatgaa 45975753  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 276
Target Start/End: Complemental strand, 5592762 - 5592694
Alignment:
Q  208 tataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatg 276  Q
    ||||||||| ||| |||||| |||| ||||| | |||||||||||||||||||||  || |||||||||    
T  5592762 tataagctataagttgttttcataagctagtcttaagagcttatgaaaataagctggaaacaacttatg 5592694  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 243 - 298
Target Start/End: Original strand, 25479609 - 25479664
Alignment:
Q  243 agagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttca 298  Q
    |||||||||||||||||||| ||| ||||| ||||| ||||| ||| |||||||||    
T  25479609 agagcttatgaaaataagctgaaaacaactaatgaacatgtcataatctattttca 25479664  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 197 - 283
Target Start/End: Original strand, 38578509 - 38578596
Alignment:
Q  197 aattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatg-aaaataagctaaaaccaacttatgaagatgt 283  Q
    |||||||||||||||||||| ||| |||||  |||||||| |   ||||| ||||| |||||||||| ||| ||||||||||| ||||    
T  38578509 aattatttttgtataagctataagttgtttacataaactattgagaagagtttatgaaaaataagctcaaaacaacttatgaatatgt 38578596  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 276
Target Start/End: Original strand, 16322852 - 16322910
Alignment:
Q  218 aagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatg 276  Q
    |||||||||| |||  ||| ||| ||||||||||| ||||||||||||| |||||||||    
T  16322852 aagctgttttcataggctattttgaagagcttatggaaataagctaaaaacaacttatg 16322910  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 4700144 - 4700079
Alignment:
Q  207 gtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaact 272  Q
    |||||||||| || ||||||||||||||||   |  |||||||||||||||||||| ||| |||||    
T  4700144 gtataagctataaactgtttttataaactatcctggagagcttatgaaaataagctgaaaacaact 4700079  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 258
Target Start/End: Complemental strand, 33546541 - 33546480
Alignment:
Q  197 aattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaata 258  Q
    |||| |||||||||| |||  ||| ||||||||||| |||| || |||||||||||||||||    
T  33546541 aattctttttgtatatgctctaagttgtttttataagctagattgaagagcttatgaaaata 33546480  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 277
Target Start/End: Complemental strand, 836427 - 836347
Alignment:
Q  197 aattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatga 277  Q
    |||| ||||||||||||||| ||| | ||||||||| ||| || | | | || |||||||| |||||||| ||||||||||    
T  836427 aattgtttttgtataagctataagttatttttataagctatttaagaaaactaatgaaaatgagctaaaaacaacttatga 836347  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 295
Target Start/End: Complemental strand, 16981978 - 16981926
Alignment:
Q  243 agagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattt 295  Q
    |||||||||  ||||||||||||| ||||||||| | ||||| ||||||||||    
T  16981978 agagcttatataaataagctaaaaacaacttatggacatgtcataaactattt 16981926  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 300
Target Start/End: Original strand, 20713681 - 20713741
Alignment:
Q  240 taaagagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttcaca 300  Q
    ||||||||||||||||||||| ||||| || |||||| | ||||| ||| |||||| ||||    
T  20713681 taaagagcttatgaaaataagataaaaacagcttatggacatgtcgtaagctatttccaca 20713741  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 298
Target Start/End: Complemental strand, 38170780 - 38170677
Alignment:
Q  197 aattatttttgtataagctacaagctgtttttat--aaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactatt 294  Q
    ||||||||| |||||||||| ||  ||||||| |  || ||| ||| ||||||||| ||||| ||||| ||| ||||||||||| ||||| ||| || ||    
T  38170780 aattattttcgtataagctataaattgtttttttgtaagctaatttgaagagcttaggaaaacaagctgaaaacaacttatgaacatgtcataagctgtt 38170681  T
Q  295 ttca 298  Q
    ||||    
T  38170680 ttca 38170677  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 197 - 284
Target Start/End: Complemental strand, 39236583 - 39236496
Alignment:
Q  197 aattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtc 284  Q
    |||||||||| ||||| | | ||| |||||| ||||||||  ||||| ||||||| |||||||||||||| ||||||||||| |||||    
T  39236583 aattatttttatataaacaataagttgttttaataaactatcttaaaaagcttataaaaataagctaaaaacaacttatgaatatgtc 39236496  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 298
Target Start/End: Complemental strand, 43717177 - 43717123
Alignment:
Q  244 gagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttca 298  Q
    ||||||||||||||||||| ||| |||| |||||| ||||||||| || ||||||    
T  43717177 gagcttatgaaaataagctgaaaacaacctatgaaaatgtcctaagctgttttca 43717123  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 266
Target Start/End: Original strand, 1899923 - 1899992
Alignment:
Q  197 aattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaa 266  Q
    |||| |||| |||||||||| ||  |||||| |||||||| | ||||||| |||| ||||||||||||||    
T  1899923 aattgttttcgtataagctataaaatgttttcataaactattctaaagagtttataaaaataagctaaaa 1899992  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 276
Target Start/End: Complemental strand, 7103560 - 7103491
Alignment:
Q  208 tataagctacaagctgttttt-ataaactagtttaaagagcttatgaaaataagctaaaaccaacttatg 276  Q
    ||||||||| ||||||||||| |||| |||  ||| |||| || |||||||||||||||| |||||||||    
T  7103560 tataagctataagctgtttttcataagctatcttagagagtttgtgaaaataagctaaaaacaacttatg 7103491  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 278
Target Start/End: Complemental strand, 12313261 - 12313180
Alignment:
Q  197 aattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaa 278  Q
    |||||||||||| ||||||||||  |||||  |||| |||  ||  |||||||||||||||||| | ||| |||||||||||    
T  12313261 aattatttttgtttaagctacaaattgtttacataagctatcttggagagcttatgaaaataaggtgaaatcaacttatgaa 12313180  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 218 - 298
Target Start/End: Complemental strand, 17258950 - 17258870
Alignment:
Q  218 aagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttca 298  Q
    |||||||||| ||||||||   | ||||||||||||||||||||| ||| || |||||||| ||||| ||| |||||||||    
T  17258950 aagctgttttcataaactatcctgaagagcttatgaaaataagctgaaaacagcttatgaacatgtcataagctattttca 17258870  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 278
Target Start/End: Complemental strand, 41981948 - 41981872
Alignment:
Q  202 tttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaa 278  Q
    ||||||||||| ||| |||||||||| |||||||| |||  ||| |||| ||||||||||||||| || ||||||||    
T  41981948 tttttgtataaactataagctgttttcataaactatttttgagaacttacgaaaataagctaaaagcagcttatgaa 41981872  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 298
Target Start/End: Original strand, 2568645 - 2568741
Alignment:
Q  202 tttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttca 298  Q
    |||| |||||||||| ||| |||||| |||| |||   |  |||||| |||||||||||||||||  |||||||||| ||||| ||| || ||||||    
T  2568645 ttttcgtataagctataagttgttttcataagctatcatggagagctaatgaaaataagctaaaaataacttatgaatatgtcataagctgttttca 2568741  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 262
Target Start/End: Original strand, 6593290 - 6593346
Alignment:
Q  206 tgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagct 262  Q
    |||||| |||| |||||||||| |||| |||  ||| ||||||||||||||||||||    
T  6593290 tgtataggctataagctgttttgataagctaccttagagagcttatgaaaataagct 6593346  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 41225088 - 41225132
Alignment:
Q  251 tgaaaataagctaaaaccaacttatgaagatgtcctaaactattt 295  Q
    ||||||||||||||||||| |||||||| |||||  |||||||||    
T  41225088 tgaaaataagctaaaaccagcttatgaacatgtcacaaactattt 41225132  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 197 - 262
Target Start/End: Original strand, 3155585 - 3155650
Alignment:
Q  197 aattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagct 262  Q
    |||| |||||||| ||||||||||||||||| ||||||||  || |||| || |||||||||||||    
T  3155585 aattgtttttgtacaagctacaagctgttttcataaactatcttgaagaactaatgaaaataagct 3155650  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 278
Target Start/End: Original strand, 25332756 - 25332838
Alignment:
Q  197 aattatttttgtataagctacaagctgtttttataaactagtttaa-agagcttatgaaaataagctaaaaccaacttatgaa 278  Q
    |||| ||||||||||||||  ||||| ||||||||| |||  |||  ||| |||||||||||||||| ||| |||||||||||    
T  25332756 aattgtttttgtataagctctaagctatttttataagctatcttatcagaacttatgaaaataagctgaaaacaacttatgaa 25332838  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 53294202 - 53294137
Alignment:
Q  197 aattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagct 262  Q
    |||| |||||||||| |||| ||| |||||||||||||||  ||| ||| |||||||||| |||||    
T  53294202 aattgtttttgtatatgctataagttgtttttataaactatattagagaacttatgaaaacaagct 53294137  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 20105497 - 20105453
Alignment:
Q  218 aagctgtttttataaactagtttaaagagcttatgaaaataagct 262  Q
    ||||||||||||||||||| | | ||||||||||| |||||||||    
T  20105497 aagctgtttttataaactattctgaagagcttatgtaaataagct 20105453  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 276
Target Start/End: Complemental strand, 33534246 - 33534178
Alignment:
Q  208 tataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatg 276  Q
    ||||| ||||||| ||||||  |||| || |||  |||||||||||||||||||| ||| |||||||||    
T  33534246 tataatctacaagttgttttcgtaaattatttttgagagcttatgaaaataagctgaaaacaacttatg 33534178  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 283
Target Start/End: Complemental strand, 55084523 - 55084483
Alignment:
Q  243 agagcttatgaaaataagctaaaaccaacttatgaagatgt 283  Q
    |||||||||||||||||||| |||||| |||||||| ||||    
T  55084523 agagcttatgaaaataagctgaaaccagcttatgaacatgt 55084483  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 298
Target Start/End: Original strand, 752956 - 753052
Alignment:
Q  202 tttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttca 298  Q
    ||||||||||||||| |||||||||| ||||||||  ||   |||| ||||||||| |||||||| || |||||  | ||||| |||||| ||||||    
T  752956 tttttgtataagctataagctgttttgataaactatcttggggagcatatgaaaattagctaaaaacagcttattgatatgtcataaactgttttca 753052  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 262
Target Start/End: Original strand, 39907778 - 39907850
Alignment:
Q  190 aaggtttaattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagct 262  Q
    |||||| |||| ||||||||||||||| || ||||||| ||||||||  ||| ||| || |||||||||||||    
T  39907778 aaggttaaattgtttttgtataagctataaactgttttcataaactatcttagagaactaatgaaaataagct 39907850  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 266
Target Start/End: Original strand, 12110342 - 12110411
Alignment:
Q  197 aattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaa 266  Q
    |||| |||| |||||||||| |||||||||| |||| |||  || |||| ||||||||||||| ||||||    
T  12110342 aattgttttggtataagctataagctgttttcataagctatcttgaagaacttatgaaaataatctaaaa 12110411  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 266
Target Start/End: Complemental strand, 43694658 - 43694589
Alignment:
Q  197 aattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaa 266  Q
    |||| |||||||||| |||| ||||||||||||||| |||  |  |||| ||||||||||||||| ||||    
T  43694658 aattgtttttgtatatgctataagctgtttttataagctatatcgaagaacttatgaaaataagcaaaaa 43694589  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 276
Target Start/End: Complemental strand, 15075170 - 15075094
Alignment:
Q  200 tatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatg 276  Q
    ||||||| |||||| || ||| | |||| ||||||||  ||| |||||||||| ||||||||||||| || ||||||    
T  15075170 tatttttatataagttataagttattttcataaactaccttagagagcttatggaaataagctaaaaacagcttatg 15075094  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 296
Target Start/End: Complemental strand, 33708484 - 33708432
Alignment:
Q  244 gagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactatttt 296  Q
    |||||||| || ||||||||||| ||||||||||| || || |||||||||||    
T  33708484 gagcttataaagataagctaaaagcaacttatgaaaatatcataaactatttt 33708432  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 288
Target Start/End: Original strand, 24785290 - 24785334
Alignment:
Q  244 gagcttatgaaaataagctaaaaccaacttatgaagatgtcctaa 288  Q
    |||||||||||||||| |||||| ||||||||||| |||||||||    
T  24785290 gagcttatgaaaataaactaaaaacaacttatgaaaatgtcctaa 24785334  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 30443881 - 30443940
Alignment:
Q  203 ttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagct 262  Q
    ||||||||| |||| |||||||||||||||||||  ||  ||| ||||||||||||||||    
T  30443881 ttttgtatatgctataagctgtttttataaactatattggagaacttatgaaaataagct 30443940  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 211 - 298
Target Start/End: Complemental strand, 40122827 - 40122740
Alignment:
Q  211 aagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttca 298  Q
    |||||| ||| ||||||||||| |||   |||| || | ||| ||||||||||||| ||||||||  ||||||| |||||||||||||    
T  40122827 aagctataagttgtttttataagctatcctaaaaagttaatggaaataagctaaaaacaacttatagagatgtcataaactattttca 40122740  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 293
Target Start/End: Original strand, 24785233 - 24785283
Alignment:
Q  243 agagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactat 293  Q
    |||||||||| ||||||||||||| ||||||||||| ||||| ||| ||||    
T  24785233 agagcttatgtaaataagctaaaaacaacttatgaacatgtcataagctat 24785283  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 279
Target Start/End: Complemental strand, 28622082 - 28622005
Alignment:
Q  202 tttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaag 279  Q
    ||||||| ||||||| |||||||||| ||||||||  ||  ||| ||||||||||||| || ||| || |||||||||    
T  28622082 tttttgtgtaagctataagctgttttcataaactatcttcgagaacttatgaaaataacctgaaaacagcttatgaag 28622005  T

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Target: scaffold0091 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 208 - 267
Target Start/End: Original strand, 6945 - 7004
Alignment:
Q  208 tataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaac 267  Q
    ||||||||| ||||||||||| ||| |||   | ||||||||||||||||||||||||||    
T  6945 tataagctataagctgtttttgtaagctatcatgaagagcttatgaaaataagctaaaac 7004  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 203 - 278
Target Start/End: Complemental strand, 9109333 - 9109258
Alignment:
Q  203 ttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaa 278  Q
    |||||||||||||| |||||||||| || ||||| |||  ||| | |||||||||||| | ||| |||||||||||    
T  9109333 ttttgtataagctataagctgttttcattaactaatttggagaacctatgaaaataaggtgaaaacaacttatgaa 9109258  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 247 - 278
Target Start/End: Original strand, 33737774 - 33737805
Alignment:
Q  247 cttatgaaaataagctaaaaccaacttatgaa 278  Q
    ||||||||||||||||||||||||||||||||    
T  33737774 cttatgaaaataagctaaaaccaacttatgaa 33737805  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 283
Target Start/End: Complemental strand, 28641791 - 28641751
Alignment:
Q  243 agagcttatgaaaataagctaaaaccaacttatgaagatgt 283  Q
    |||||||||||||||||||||||| || |||||||| ||||    
T  28641791 agagcttatgaaaataagctaaaaacagcttatgaacatgt 28641751  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 277
Target Start/End: Complemental strand, 35070559 - 35070475
Alignment:
Q  193 gtttaattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatga 277  Q
    |||||||| |||||||| ||| || ||||||||||| ||| |||  ||  |||||||||||||||||| | ||| || |||||||    
T  35070559 gtttaattgtttttgtacaagttataagctgtttttgtaagctatgtttgagagcttatgaaaataagttgaaaacagcttatga 35070475  T

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