View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_606 (Length: 230)

Name: NF10145A_low_606
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_606
NF10145A_low_606
[»] chr7 (1 HSPs)
chr7 (14-146)||(43687047-43687179)
[»] chr1 (3 HSPs)
chr1 (67-145)||(5913798-5913876)
chr1 (68-145)||(2467520-2467597)
chr1 (73-145)||(42327787-42327859)
[»] chr4 (1 HSPs)
chr4 (72-145)||(30669197-30669270)
[»] chr3 (2 HSPs)
chr3 (72-145)||(31393700-31393773)
chr3 (68-145)||(55145331-55145408)
[»] chr5 (1 HSPs)
chr5 (68-145)||(35073179-35073256)
[»] chr6 (1 HSPs)
chr6 (73-143)||(6311545-6311615)
[»] chr2 (1 HSPs)
chr2 (84-145)||(39003377-39003438)


Alignment Details
Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 14 - 146
Target Start/End: Complemental strand, 43687179 - 43687047
Alignment:
Q  14 acatcacaaatatattctaaccttagtatctttatattaatcataaatcaacaaaacaagcgcctgtagctcagtggatagagcgtctgtttcctaagca 113  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43687179 acatcacaaatatattctaaccttaatatctttatgttaatcataaatcaacaaaacaagcgcctgtagctcagtggatagagcgtctgtttcctaagca 43687080  T
Q  114 gaaagtcgtaggttcgacccctacctggcgcga 146  Q
    |||||||||||||||||||||||||||||||||    
T  43687079 gaaagtcgtaggttcgacccctacctggcgcga 43687047  T

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Target: chr1 (Bit Score: 79; Significance: 4e-37; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 67 - 145
Target Start/End: Original strand, 5913798 - 5913876
Alignment:
Q  67 aaacaagcgcctgtagctcagtggatagagcgtctgtttcctaagcagaaagtcgtaggttcgacccctacctggcgcg 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5913798 aaacaagcgcctgtagctcagtggatagagcgtctgtttcctaagcagaaagtcgtaggttcgacccctacctggcgcg 5913876  T

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Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 68 - 145
Target Start/End: Complemental strand, 2467597 - 2467520
Alignment:
Q  68 aacaagcgcctgtagctcagtggatagagcgtctgtttcctaagcagaaagtcgtaggttcgacccctacctggcgcg 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2467597 aacaagcgcctgtagctcagtggatagagcgtctgtttcctaagcagaaagtcgtaggttcgacccctacctggcgcg 2467520  T

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Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 73 - 145
Target Start/End: Complemental strand, 42327859 - 42327787
Alignment:
Q  73 gcgcctgtagctcagtggatagagcgtctgtttcctaagcagaaagtcgtaggttcgacccctacctggcgcg 145  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  42327859 gcgcttgtagctcagtggatagagcgtctgtttcctaagcagaaggtcgtaggttcgacccctacctggcgcg 42327787  T

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Target: chr4 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 72 - 145
Target Start/End: Complemental strand, 30669270 - 30669197
Alignment:
Q  72 agcgcctgtagctcagtggatagagcgtctgtttcctaagcagaaagtcgtaggttcgacccctacctggcgcg 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30669270 agcgcctgtagctcagtggatagagcgtctgtttcctaagcagaaagtcgtaggttcgacccctacctggcgcg 30669197  T

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Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 72 - 145
Target Start/End: Complemental strand, 31393773 - 31393700
Alignment:
Q  72 agcgcctgtagctcagtggatagagcgtctgtttcctaagcagaaagtcgtaggttcgacccctacctggcgcg 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  31393773 agcgcctgtagctcagtggatagagcgtctgtttcctaagcagaaggtcgtaggttcgacccctacctggcgcg 31393700  T

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Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 68 - 145
Target Start/End: Complemental strand, 55145408 - 55145331
Alignment:
Q  68 aacaagcgcctgtagctcagtggatagagcgtctgtttcctaagcagaaagtcgtaggttcgacccctacctggcgcg 145  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  55145408 aacaagcgcttgtagctcagtggatagagcgtctgtttcctaagcagaaggtcgtaggttcgacccctatctggcgcg 55145331  T

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Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 68 - 145
Target Start/End: Complemental strand, 35073256 - 35073179
Alignment:
Q  68 aacaagcgcctgtagctcagtggatagagcgtctgtttcctaagcagaaagtcgtaggttcgacccctacctggcgcg 145  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||    
T  35073256 aacaagcgcctgtagctcagtggatagagcgtccgtttcctaagcggaaggtcgtaggttcgacccctacctggcgcg 35073179  T

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Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 73 - 143
Target Start/End: Complemental strand, 6311615 - 6311545
Alignment:
Q  73 gcgcctgtagctcagtggatagagcgtctgtttcctaagcagaaagtcgtaggttcgacccctacctggcg 143  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  6311615 gcgcctgtagctcagtggatagagcgtctgtttcctaagcagaaggtcgtaggttcgacccctatctggcg 6311545  T

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Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 84 - 145
Target Start/End: Complemental strand, 39003438 - 39003377
Alignment:
Q  84 tcagtggatagagcgtctgtttcctaagcagaaagtcgtaggttcgacccctacctggcgcg 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39003438 tcagtggatagagcgtctgtttcctaagcagaaagtcgtaggttcgacccctacctggcgcg 39003377  T

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