View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_607 (Length: 230)
Name: NF10145A_low_607
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_607 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 32817918 - 32817689
Alignment:
| Q |
1 |
agttttaggccctttcatgtgcatcatgaaacaaattgcatttcatatggactagcattatccgcaaggccagcaatgacgttgttccaagatacaagat |
100 |
Q |
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| T |
32817918 |
agttttaggccctttcatgtgcatcatgaaacaaattgcatttcatatggactagcattatccgcaaggccagcaatgacgttgttccaagatacaagat |
32817819 |
T |
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| Q |
101 |
ctggttccagtattggataaatcactttcatgacaccaccatttaaaccttgtttagcatgtcccaaatgaaggtgttccatgaagtagaacttaaatgg |
200 |
Q |
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| T |
32817818 |
ctggttccagtattggataaatcactttcacgacaccaccatttaaaccttgtttagcatgtcccaaatgaaggtgttccatgaagtagaacttaaatgg |
32817719 |
T |
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| Q |
201 |
gatttcatagaaaactgaaaactcatgtga |
230 |
Q |
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| T |
32817718 |
gatttcatagaaaactgaaaactcatgtga |
32817689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 189
Target Start/End: Complemental strand, 32815901 - 32815762
Alignment:
| Q |
51 |
actagcattatccgcaaggccagcaatgacgttgttccaagatacaagatctggttccagtattggataaatcactttcatgacaccaccatttaaacct |
150 |
Q |
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| T |
32815901 |
actagcattatctacaagaccagcaatgatgctgttccaagatacaatatccggttccggcattttatcaaacagtttcatcgcatcatcaatcaaacct |
32815802 |
T |
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| Q |
151 |
tgtttagcatgtccc-aaatgaaggtgttccatgaagtag |
189 |
Q |
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| T |
32815801 |
tgttttgcataccccaaaatgagtgtgttccatgaagtag |
32815762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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