View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10145A_low_608 (Length: 230)
Name: NF10145A_low_608
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_608 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 5034677 - 5034906
Alignment:
| Q |
1 |
tgatccataaatataattaacttgtaaggttaatatttaccgaactttattgaaagtaaatctctacatctctcgtattagcaacatgggttgtcatcca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5034677 |
tgatccataaatataattaacttgtaaggttaatatttaccgaactttattgaaagtaaatctctacatctctcgtattagcaacatgggttgtcatcca |
5034776 |
T |
|
| Q |
101 |
acaaagcgatgggagcaaacgtgttgggtaatgagggcagcttgggtgattatccatattggactaagagcaaccacacaagtgaattgtacaccatatt |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5034777 |
acaaatcgatgggagcaaacgtgttgggtcatgagggcagcttgggtgattatccatattggactaagagcaaccacacaagtgaattgtacaccatatt |
5034876 |
T |
|
| Q |
201 |
tttatccaaaaccttaaaacattgagttga |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
5034877 |
tttatccaaaaccttaaaacattgagttga |
5034906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 224
Target Start/End: Original strand, 5035331 - 5035400
Alignment:
| Q |
155 |
catattggactaagagcaaccacacaagtgaattgtacaccatatttttatccaaaaccttaaaacattg |
224 |
Q |
| |
|
|||||| ||| ||||||||| |||||||||| ||| |||||| || ||||||||||| ||||||| |||| |
|
|
| T |
5035331 |
catattagaccaagagcaacaacacaagtgagttgaacaccacatctttatccaaaaacttaaaatattg |
5035400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 41603213 - 41603261
Alignment:
| Q |
169 |
agcaaccacacaagtgaattgtacaccatatttttatccaaaaccttaa |
217 |
Q |
| |
|
|||||||| ||||||||||||||||||| || |||| |||||||||||| |
|
|
| T |
41603213 |
agcaaccatacaagtgaattgtacaccaaatctttacccaaaaccttaa |
41603261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 217
Target Start/End: Complemental strand, 29802722 - 29802627
Alignment:
| Q |
122 |
tgttgggtaatgagggcagcttgggtgattatccatattggactaagagcaaccacacaagtgaattgtacaccatatttttatccaaaaccttaa |
217 |
Q |
| |
|
|||||||| ||| ||| ||| ||| ||| ||||| ||||| | |||||||||||||||||||| ||| ||||||||| || | ||||||||||| |
|
|
| T |
29802722 |
tgttgggtcatggggggagcccgggggatcatccacattgggccaagagcaaccacacaagtgagttggacaccatatcttaacacaaaaccttaa |
29802627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 217
Target Start/End: Complemental strand, 2041228 - 2041167
Alignment:
| Q |
155 |
catattggactaagagcaaccacacaagtgaattgtacaccatatttttatccaaaaccttaa |
217 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||| |||||| || || | |||||||||||| |
|
|
| T |
2041228 |
catattgg-ctaagagcaaccacacaagtgagttggacaccacatcttcacccaaaaccttaa |
2041167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 218
Target Start/End: Complemental strand, 30249858 - 30249788
Alignment:
| Q |
148 |
gattatccatattggactaagagcaaccacacaagtgaattgtacaccatatttttatccaaaaccttaaa |
218 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||| ||| ||| || ||| | ||||||||||||| |
|
|
| T |
30249858 |
gattatccacattagactaagagcaaccacacaagtgatttggacatcactctttaacccaaaaccttaaa |
30249788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 228
Target Start/End: Complemental strand, 11442999 - 11442928
Alignment:
| Q |
158 |
attggactaagagcaaccacacaagtga-attgtacaccatatttttatccaaaaccttaaaacattgagtt |
228 |
Q |
| |
|
||||| |||||||||||||||||||||| |||| |||||| || || | |||||||||||| ||||||||| |
|
|
| T |
11442999 |
attgggctaagagcaaccacacaagtgagattggacaccacatattcacccaaaaccttaaggcattgagtt |
11442928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 20511162 - 20511207
Alignment:
| Q |
166 |
aagagcaaccacacaagtgaattgtacaccatatttttatccaaaa |
211 |
Q |
| |
|
|||| ||||||||||||||| || | |||||||||||||||||||| |
|
|
| T |
20511162 |
aagaacaaccacacaagtgagttatgcaccatatttttatccaaaa |
20511207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University