View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_61 (Length: 410)
Name: NF10145A_low_61
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_61 |
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Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 45099062 - 45099455
Alignment:
| Q |
1 |
aatatcacaaaaatgcaaccgaatcaaatgtgaaacgccatcacgagccacaggaaaattccatgttatattaaaccttgaagctaaacttgagttttcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45099062 |
aatatcacaaaaatgcaaccgaatcaaatgtgaaacgccatcacgagccacaggaaaattccatgttatattaaaccttgaagctaaacttgagttttcc |
45099161 |
T |
|
| Q |
101 |
ctattcatctgttgagcagtcatgtaaacattttcaggtgcgatctctggagtagcacctcccttctggtaatcaggtgtatgagtgcttactgcatgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45099162 |
ctattcatctgttgagcagtcatgtaaacattttcaggcgcgatctctggagtagcacctcccttctggtaatcaggtgtatgagtgcttactgcatgtt |
45099261 |
T |
|
| Q |
201 |
tagctgcttccttaaaaaccaaataatcctcatcaggaatccaagttctccaaagggtatcattaaaaggagttattttcatacctcctacattaatcct |
300 |
Q |
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| T |
45099262 |
tagctgcttccttaaaaaccaaataatcctcatcaggaatccaagttctccaaagggtgtcattaaaaggagttattttcatacctcctacattaatcct |
45099361 |
T |
|
| Q |
301 |
atgaacagtttccaaaacctgagatgaaagatttctatactcttccacaccagaaggaccaaccaaccttgttccataatctataacaaaatct |
394 |
Q |
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| T |
45099362 |
atgaacagtttccaaaacctgagatgaaagatttctatactcttccacaccagaaggaccaaccaaccttgttccataatctataacaaaatct |
45099455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 98 - 318
Target Start/End: Complemental strand, 17348858 - 17348638
Alignment:
| Q |
98 |
tccctattcatctgttgagcagtcatgtaaacattttcaggtgcgatctctggagtagcacctcccttctggtaatcaggtgtatgagtgcttactgcat |
197 |
Q |
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||||||||||||| ||||||||||| |||||| | || || ||||||||| || || || || ||||| ||||| ||||| |||||||| ||| || |
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| T |
17348858 |
tccctattcatctcctgagcagtcatataaacactatccggcgcgatctctctagccgcgccccctttctgataatctggtgtgtgagtgctcactacag |
17348759 |
T |
|
| Q |
198 |
gtttagctgcttccttaaaaaccaaataatcctcatcaggaatccaagttctccaaagggtatcattaaaaggagttattttcatacctcctacattaat |
297 |
Q |
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|||||||| ||||||||||||| | |||||| |||||||||||| ||||||||||||||||||||||||||||||| ||| |||||| |||||||| |
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| T |
17348758 |
ccttagctgcatccttaaaaaccagaaaatccttatcaggaatccatgttctccaaagggtatcattaaaaggagttaatttttcacctccaacattaat |
17348659 |
T |
|
| Q |
298 |
cctatgaacagtttccaaaac |
318 |
Q |
| |
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|||||||| |||||| ||||| |
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| T |
17348658 |
cctatgaatagtttctaaaac |
17348638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 319
Target Start/End: Complemental strand, 17363945 - 17363885
Alignment:
| Q |
259 |
atcattaaaaggagttattttcatacctcctacattaatcctatgaacagtttccaaaacc |
319 |
Q |
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||||||||| ||||||||||||| ||| | || ||||||||||||| |||||| |||||| |
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| T |
17363945 |
atcattaaagggagttattttcaaaccatcaacgttaatcctatgaatagtttctaaaacc |
17363885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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