View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_617 (Length: 229)

Name: NF10145A_low_617
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_617
NF10145A_low_617
[»] chr1 (4 HSPs)
chr1 (20-209)||(18438563-18438749)
chr1 (20-209)||(18449421-18449607)
chr1 (20-209)||(18454514-18454700)
chr1 (57-108)||(42080703-42080754)
[»] chr2 (6 HSPs)
chr2 (20-209)||(31320217-31320417)
chr2 (47-201)||(9446963-9447128)
chr2 (50-108)||(21949909-21949967)
chr2 (60-108)||(14555896-14555944)
chr2 (166-209)||(38346614-38346657)
chr2 (48-108)||(13698129-13698189)
[»] chr5 (3 HSPs)
chr5 (40-203)||(31610025-31610199)
chr5 (54-109)||(11888191-11888246)
chr5 (57-108)||(33417438-33417489)
[»] chr7 (4 HSPs)
chr7 (60-108)||(8425057-8425105)
chr7 (48-202)||(30559269-30559434)
chr7 (57-108)||(49094557-49094608)
chr7 (57-108)||(38836146-38836197)
[»] chr6 (1 HSPs)
chr6 (57-109)||(6982841-6982893)
[»] chr4 (3 HSPs)
chr4 (57-108)||(2048991-2049042)
chr4 (57-108)||(39735820-39735871)
chr4 (59-108)||(3958957-3959006)
[»] scaffold0141 (1 HSPs)
scaffold0141 (60-108)||(16545-16593)
[»] chr8 (1 HSPs)
chr8 (62-107)||(19168189-19168234)
[»] chr3 (1 HSPs)
chr3 (48-108)||(3830691-3830751)


Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 20 - 209
Target Start/End: Original strand, 18438563 - 18438749
Alignment:
Q  20 gaagagtaaaggaggcagtcataagaagcaaaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatctgactgtcttg 119  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18438563 gaagagtaaaggaggcagtcataagaatcaaaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatctgactgtcttg 18438662  T
Q  120 ttgaaagttccatatcttgcagttgttgttcttatttgagttcaacttctgttattttagatggttgctgaatctatcttagtgggatag 209  Q
    |||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18438663 ttgaaagttccatatcttgca---gttgttcttatttgagttcaacttctgttattttagatggttgctgaatctatcttagtgggatag 18438749  T

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Target: chr1; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 20 - 209
Target Start/End: Original strand, 18449421 - 18449607
Alignment:
Q  20 gaagagtaaaggaggcagtcataagaagcaaaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatctgactgtcttg 119  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18449421 gaagagtaaaggaggcagtcataagaatcaaaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatctgactgtcttg 18449520  T
Q  120 ttgaaagttccatatcttgcagttgttgttcttatttgagttcaacttctgttattttagatggttgctgaatctatcttagtgggatag 209  Q
    |||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18449521 ttgaaagttccatatcttgca---gttgttcttatttgagttcaacttctgttattttagatggttgctgaatctatcttagtgggatag 18449607  T

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Target: chr1; HSP #3
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 20 - 209
Target Start/End: Original strand, 18454514 - 18454700
Alignment:
Q  20 gaagagtaaaggaggcagtcataagaagcaaaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatctgactgtcttg 119  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18454514 gaagagtaaaggaggcagtcataagaatcaaaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatctgactgtcttg 18454613  T
Q  120 ttgaaagttccatatcttgcagttgttgttcttatttgagttcaacttctgttattttagatggttgctgaatctatcttagtgggatag 209  Q
    |||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18454614 ttgaaagttccatatcttgca---gttgttcttatttgagttcaacttctgttattttagatggttgctgaatctatcttagtgggatag 18454700  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 108
Target Start/End: Complemental strand, 42080754 - 42080703
Alignment:
Q  57 agtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 108  Q
    |||||||||||||| ||||  ||||||||||||||||| |||||||||||||    
T  42080754 agtagtgagcacatccaaactcgttccaaaaagggtgtaatcaaaagcaatc 42080703  T

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Target: chr2 (Bit Score: 119; Significance: 6e-61; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 20 - 209
Target Start/End: Original strand, 31320217 - 31320417
Alignment:
Q  20 gaagagtaaaggaggcagtcataagaagcaaaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc----------- 108  Q
    |||||||||| ||||||| ||| |||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||               
T  31320217 gaagagtaaaagaggcagacatcagaagcaatacactagtagtgagctcatacaaacgcgttccaaaaagggtgtgatcaaaagcaatcccaaatatatg 31320316  T
Q  109 tgactgtcttgttgaaagttccatatcttgcagttgttgttcttatttgagttcaacttctgttattttagatggttgctgaatctatcttagtgggata 208  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||| ||||||||||||||||||||||||||||||||    
T  31320317 tgattgtcttgttgaaagttccatatcttgcagttgttgttcttatttgggttcatcttctgctattctagatggttgctgaatctatcttagtgggata 31320416  T
Q  209 g 209  Q
    |    
T  31320417 g 31320417  T

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Target: chr2; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 47 - 201
Target Start/End: Original strand, 9446963 - 9447128
Alignment:
Q  47 gcaaaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc-----------tgactgtcttgttgaaagttccatatc 135  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||    
T  9446963 gcaaaacactagtagtgagcacacacaaacgcgttccaaaaagggtgtgatcaaaagcaatcccaaatatatgtgactgtcttgttgaaagttccatatc 9447062  T
Q  136 ttgcagttgttgttcttatttgagttcaacttctgttattttagatggttgctgaatctatcttag 201  Q
    ||||||||||||||||||| || ||||||||||||||||||| |||||| ||||||||||||||||    
T  9447063 ttgcagttgttgttcttatgtgggttcaacttctgttattttggatggtggctgaatctatcttag 9447128  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 21949967 - 21949909
Alignment:
Q  50 aaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 108  Q
    ||||||||||||||||||||||||||  ||||| ||||||||||| |||||||||||||    
T  21949967 aaacactagtagtgagcacatacaaactcgttctaaaaagggtgtaatcaaaagcaatc 21949909  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 14555896 - 14555944
Alignment:
Q  60 agtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 108  Q
    ||||| || |||||||  |||||||||||||||||||||||||||||||    
T  14555896 agtgatcatatacaaactcgttccaaaaagggtgtgatcaaaagcaatc 14555944  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 209
Target Start/End: Complemental strand, 38346657 - 38346614
Alignment:
Q  166 ttctgttattttagatggttgctgaatctatcttagtgggatag 209  Q
    |||||||||||| | ||||||||||||||||||| |||||||||    
T  38346657 ttctgttattttggttggttgctgaatctatcttggtgggatag 38346614  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 13698129 - 13698189
Alignment:
Q  48 caaaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 108  Q
    |||| ||| |||||||||||||| ||||   ||||||  ||||||||||||||||||||||    
T  13698129 caaagcacaagtagtgagcacattcaaactggttccatgaagggtgtgatcaaaagcaatc 13698189  T

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Target: chr5 (Bit Score: 109; Significance: 6e-55; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 40 - 203
Target Start/End: Original strand, 31610025 - 31610199
Alignment:
Q  40 ataagaagcaaaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatct-----------gactgtcttgttgaaagtt 128  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||            |||||||||||||||||||    
T  31610025 ataagaagcaaaacactagtagtgagcacatacaaacgcgttctaaaaagggtgtgatcaaaagcaatcccaaatatatgcgactgtcttgttgaaagtt 31610124  T
Q  129 ccatatcttgcagttgttgttcttatttgagttcaacttctgttattttagatggttgctgaatctatcttagtg 203  Q
    |||||| ||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  31610125 ccatattttgtagttgttgttcttatttgggttcaacttctgatattttagatggttgctgaatctatcttagtg 31610199  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 54 - 109
Target Start/End: Complemental strand, 11888246 - 11888191
Alignment:
Q  54 actagtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatct 109  Q
    |||||||||||||| |||||||  |||||||| |||||||||||||||||||||||    
T  11888246 actagtagtgagcatatacaaattcgttccaagaagggtgtgatcaaaagcaatct 11888191  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 33417438 - 33417489
Alignment:
Q  57 agtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 108  Q
    |||||||||||||||||||  ||||| ||||||||||| |||||||| ||||    
T  33417438 agtagtgagcacatacaaattcgttctaaaaagggtgtaatcaaaagtaatc 33417489  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 8425057 - 8425105
Alignment:
Q  60 agtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 108  Q
    ||||||||||||||||  |||||||| ||||||||||||||||||||||    
T  8425057 agtgagcacatacaaactcgttccaagaagggtgtgatcaaaagcaatc 8425105  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 202
Target Start/End: Complemental strand, 30559434 - 30559269
Alignment:
Q  48 caaaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc-----------tgactgtcttgttgaaagttccatatct 136  Q
    |||| ||| ||| ||||||||||| |||   |||||||||||||||| |||||||||||||           |||| ||| |||||| |||||  |||      
T  30559434 caaagcacaagtcgtgagcacatagaaacttgttccaaaaagggtgttatcaaaagcaatcccaaagatttgtgacggtcatgttgacagttctgtattc 30559335  T
Q  137 tgcagttgttgttcttatttgagttcaacttctgttattttagatggttgctgaatctatcttagt 202  Q
    |||||||| ||||| ||||||  |||  ||||||||||||| | ||||||||||||||||||||||    
T  30559334 tgcagttgctgttcatatttggtttcggcttctgttattttgggtggttgctgaatctatcttagt 30559269  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 108
Target Start/End: Complemental strand, 49094608 - 49094557
Alignment:
Q  57 agtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 108  Q
    |||||||||||||||||||  ||||||||||| ||||| |||||||||||||    
T  49094608 agtagtgagcacatacaaacacgttccaaaaaaggtgttatcaaaagcaatc 49094557  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 38836146 - 38836197
Alignment:
Q  57 agtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 108  Q
    ||||||||||| |||||||  ||||||||||| ||||| |||||||||||||    
T  38836146 agtagtgagcatatacaaactcgttccaaaaatggtgttatcaaaagcaatc 38836197  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 109
Target Start/End: Original strand, 6982841 - 6982893
Alignment:
Q  57 agtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatct 109  Q
    |||||||||||||||||||  ||||| ||||||||||| ||||||||||||||    
T  6982841 agtagtgagcacatacaaactcgttcaaaaaagggtgtaatcaaaagcaatct 6982893  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 2048991 - 2049042
Alignment:
Q  57 agtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 108  Q
    ||||||||||| |||||||  ||||||||||||||||| |||||||||||||    
T  2048991 agtagtgagcatatacaaactcgttccaaaaagggtgttatcaaaagcaatc 2049042  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 39735820 - 39735871
Alignment:
Q  57 agtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 108  Q
    |||||||||||||||||||  |||||||| |||||||| |||||||||||||    
T  39735820 agtagtgagcacatacaaactcgttccaagaagggtgtaatcaaaagcaatc 39735871  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 3959006 - 3958957
Alignment:
Q  59 tagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 108  Q
    |||||||||||||||||  ||||| ||||||||||| |||||||||||||    
T  3959006 tagtgagcacatacaaactcgttctaaaaagggtgtcatcaaaagcaatc 3958957  T

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Target: scaffold0141 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 108
Target Start/End: Complemental strand, 16593 - 16545
Alignment:
Q  60 agtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 108  Q
    |||||||||||| |||  |||||||| ||||||||||||||||||||||    
T  16593 agtgagcacatataaactcgttccaagaagggtgtgatcaaaagcaatc 16545  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 107
Target Start/End: Original strand, 19168189 - 19168234
Alignment:
Q  62 tgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaat 107  Q
    ||||||||||||||  ||||| ||||||||||| ||||||||||||    
T  19168189 tgagcacatacaaactcgttctaaaaagggtgtcatcaaaagcaat 19168234  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 3830751 - 3830691
Alignment:
Q  48 caaaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 108  Q
    |||| ||| |||||||||||||| ||||  |||||||  ||| ||||||||||||||||||    
T  3830751 caaagcacaagtagtgagcacattcaaactcgttccatgaagagtgtgatcaaaagcaatc 3830691  T

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