View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_618 (Length: 229)

Name: NF10145A_low_618
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_618
NF10145A_low_618
[»] chr4 (1 HSPs)
chr4 (1-224)||(33147897-33148120)


Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 33148120 - 33147897
Alignment:
Q  1 taaagaatttcaacattctaattactaaaaagacaaatattcaaaatttacttgtgtcacaaaaagtaaaatataaatgcatatcaagctcaggatgttg 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33148120 taaagaatttcaacatcctaattactaaaaagacaaatattcaaaatttacttgtgtcacaaaaagtaaaatataaatgcatatcaagctcaggatgttg 33148021  T
Q  101 gataccatgtcaatagtcaatgcctcatcccattatcaaattcaaacatggctaactttttgggcttaatctaacaagcacaggtgccataggtctttca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33148020 gataccatgtcaatagtcaatgcctcatcccattatcaaattcaaacatggctaactttttgggcttaatctaacaagcacaggtgccataggtctttca 33147921  T
Q  201 tgtgcacaagtactcatttaccac 224  Q
    || |||||||||||||||||||||    
T  33147920 tgcgcacaagtactcatttaccac 33147897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University