View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_619 (Length: 229)
Name: NF10145A_low_619
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_619 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 2042193 - 2041964
Alignment:
| Q |
1 |
gtttgatattctgaattttggacttcatcttcattgggtgactcttcgacacatagggtgtgaaacttgtattatcagcagcattctcttcggaattttt |
100 |
Q |
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| T |
2042193 |
gtttgatattctgaattttgaacttcatcttcattcggtaactctttgacacattgggtgtgaaacttgtattatcagcagcattctctttggaatttct |
2042094 |
T |
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| Q |
101 |
agagtcaaaa-cttactgggtaattgcaagatctttttgagcaacgctacttaaaattggatctgttggtgatacttccaacaatgtctttgaaacaatg |
199 |
Q |
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| T |
2042093 |
agagtcaaaaacttattgggtaattgcaagatctttttgagcaacgctacttaaaattggatctgttgatgatacttccaacgatgtctttgaaacaatg |
2041994 |
T |
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| Q |
200 |
ctcaatatcattagaaacattacaacctga |
229 |
Q |
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| T |
2041993 |
ctcaatatcattagaaacattacaacctga |
2041964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 14 - 177
Target Start/End: Complemental strand, 3117168 - 3117004
Alignment:
| Q |
14 |
aattttggacttcatcttcattgggtgactcttcgacacatagggtgtgaaacttgtattatcagcagcattctcttc-ggaatttttagagtcaaaa-c |
111 |
Q |
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| T |
3117168 |
aattttggacttcatcttcttttggtaacttttcaaaacataaggtgtaaaacttgtattctcaaca---ttctattcaggactttctagagtcaaaaac |
3117072 |
T |
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| Q |
112 |
ttactgggtaattgcaagatctttttgagcaacgctacttaaaattggatctgt--tggtgatacttc |
177 |
Q |
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| T |
3117071 |
ttcttgaataattgtaagatctttttgagcaacgctacttaaaattagatgtgttatggtgatacttc |
3117004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 2 - 175
Target Start/End: Original strand, 22977671 - 22977845
Alignment:
| Q |
2 |
tttgatattctgaattttggactt----catcttcattgggtgactcttcgacacatagggtgtgaaacttgtattatcagcagcattctcttcggaatt |
97 |
Q |
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| T |
22977671 |
tttgatattttcaattttggacttaattcatcttctttttgtgactctttgacacctaaggagtgaaacttatattatcaaca---ttttcttcggcatt |
22977767 |
T |
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| Q |
98 |
tttagagtcaaaa-cttactgggtaattgcaagatctttttgagcaacgctacttaaaattggatctgttggtgatact |
175 |
Q |
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| T |
22977768 |
tctagagtcaaaaactttctaa-taattgcaagatcatttttagcaacgctactcaaaattggatgtgatggttatact |
22977845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 125 - 179
Target Start/End: Original strand, 31138080 - 31138134
Alignment:
| Q |
125 |
gcaagatctttttgagcaacgctacttaaaattggatctgttggtgatacttcca |
179 |
Q |
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| T |
31138080 |
gcaagagctttttgagaaacgctgcttaaaattagatgtgttggtgatacttcca |
31138134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 198
Target Start/End: Complemental strand, 31150370 - 31150232
Alignment:
| Q |
58 |
gtgtgaaacttgtattatcagcagcattctcttcggaatttttagagtcaaaacttactggg-taattgcaagatctttttgagcaacgctacttaaaat |
156 |
Q |
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| T |
31150370 |
gtgtgaaacttgtattattaaca---ttctcttcggcatttctaaagtcaaaaaccacttgaataattgcaagttcttttttagcaatgctactcaaagt |
31150274 |
T |
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| Q |
157 |
tggatctgttggtgatacttccaacaatgtctttgaaacaat |
198 |
Q |
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| T |
31150273 |
tgaatgtgttggtgatactttcagcgatttctctgaaacaat |
31150232 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 3769785 - 3769842
Alignment:
| Q |
120 |
taattgcaagatctttttgagcaacgctact-taaaattggatctgttggtgatactt |
176 |
Q |
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| T |
3769785 |
taatttcaagatcttcttgagcaacgctactgaaaaattgtatgtgttggtgatactt |
3769842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 7816611 - 7816648
Alignment:
| Q |
40 |
gactcttcgacacatagggtgtgaaacttgtattatca |
77 |
Q |
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| T |
7816611 |
gactcttcgaaacataaggtgtgaaacttgtattatca |
7816648 |
T |
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