View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_622 (Length: 229)
Name: NF10145A_low_622
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_622 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 3 - 229
Target Start/End: Complemental strand, 17107002 - 17106767
Alignment:
| Q |
3 |
ataaaaacgtaccaatgagtacagaaacatgcattatgagaaaggttctaaaagcaaatgaaattgaacacacatacgtacgaacacat------gcatc |
96 |
Q |
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| T |
17107002 |
ataaaaacgtacgaatgagtacagaaacatgcattatgagaaaggttctaaaagcaaatgaaattgaacacacatacgtaagaacacattgagatgcatc |
17106903 |
T |
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| Q |
97 |
aagccttgatgatgttataacattacaagatgacaagatcataaccagatgaaatgttaactcggcaaatgactccttcagcctgtgtaaccatctctcg |
196 |
Q |
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| T |
17106902 |
aagccttgatgatgttataacattacaagatgacaagatcataacaagatgaaatgttaactcggc-aatgactcatgcagcctgtgtaaccatctctcg |
17106804 |
T |
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| Q |
197 |
ggcaagtta----taaatcaagaaaatagtgtctttg |
229 |
Q |
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||||||||| ||||||||||||||||||| |||| |
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| T |
17106803 |
ggcaagttaaagttaaatcaagaaaatagtgtgtttg |
17106767 |
T |
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