View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_626 (Length: 229)

Name: NF10145A_low_626
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_626
NF10145A_low_626
[»] chr7 (2 HSPs)
chr7 (7-225)||(33790971-33791189)
chr7 (33-147)||(33764098-33764212)


Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 7 - 225
Target Start/End: Complemental strand, 33791189 - 33790971
Alignment:
Q  7 agatggacatcattaacagttgatactaatccatcacgtcttcctgtaggaacattgtaacgtggtccacctgctaagacaactgaatctcttgttgcta 106  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  33791189 agatgtacatcattaacagttgatactaatccatcacgtcttcctgtaggaacattgtaacttggtccacctgctaagacaacagaatctcttgttgcta 33791090  T
Q  107 atgatattatgtctgcacatgaaactgttgatggacatgcattttctaggattcttttgatttcatctatgagggtatatcctcttacagtaaggtttgc 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  33791089 atgatattatgtctgcacatgaaactgttgatggacatgcattttctaggattcttttgatttcatctatgaggttatatcctcttacagtaaggtttgc 33790990  T
Q  207 tcttgctgctttctatgat 225  Q
    |||||||||||||| ||||    
T  33790989 tcttgctgctttctctgat 33790971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 147
Target Start/End: Original strand, 33764098 - 33764212
Alignment:
Q  33 taatccatcacgtcttcctgtaggaacattgtaacgtggtccacctgctaagacaactgaatctcttgttgctaatgatattatgtctgcacatgaaact 132  Q
    |||||| ||||||||||||||||||| ||||||   |||||| || | |||| | || | ||||||||| || | || ||  |||||||||||||||||     
T  33764098 taatccgtcacgtcttcctgtaggaatattgtattttggtcctccagataaggccacagcatctcttgtagcaagtgctacgatgtctgcacatgaaacc 33764197  T
Q  133 gttgatggacatgca 147  Q
    |||||||||||||||    
T  33764198 gttgatggacatgca 33764212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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