View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_630 (Length: 229)
Name: NF10145A_low_630
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_630 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 2 - 227
Target Start/End: Complemental strand, 19176493 - 19176278
Alignment:
| Q |
2 |
gttggtacaatgttccctcttctgtcatatgataatttcatggattccgttgaaactccaaaaacagttgcactacatatgtgaaaaatcaaaacaaaag |
101 |
Q |
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| T |
19176493 |
gttggtacaatgttccctcttctgtcatatgatagtttcatggattccgttgaaactccaaaaacagttgcactacatatgtgaaaaatcaaaacaaaag |
19176394 |
T |
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| Q |
102 |
aatgtaccaaaaatcacacattcaattaaactattaacaac-aaatattgtacaaagctctcagaaagctctcagaactttgaaatttcaaagcaaaacc |
200 |
Q |
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| T |
19176393 |
aatttaccaaaattcacacattccattaaattattaacaacaaaatattgtac-----------aaagctctcagagctttggaatttcaaagcaaaacc |
19176305 |
T |
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| Q |
201 |
tagttgtgcattataacatttgcaagt |
227 |
Q |
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| T |
19176304 |
taattgtgcattataacatttgcaagt |
19176278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 2 - 141
Target Start/End: Complemental strand, 27035389 - 27035251
Alignment:
| Q |
2 |
gttggtacaatgttccctcttctgtcatatgataatttcatggattccgttgaaactccaaaaacagttgcactacatatgtgaaaaatcaaaacaaaag |
101 |
Q |
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| T |
27035389 |
gttggtacaatgttccctcttctgtcatatgataatttcatggattctgttgaaactccaaaaacagtcgcactacatgtgtgaaaaatcaaaacaaaag |
27035290 |
T |
|
| Q |
102 |
aatgtaccaaaaatcacacattcaattaaactattaacaa |
141 |
Q |
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| T |
27035289 |
aatttagc-aaaatcacacattccatgaagttattaacaa |
27035251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 36406467 - 36406389
Alignment:
| Q |
1 |
tgttggtacaatgttccctcttctgtcatatgataatttcatggattccgttgaaactccaaaaacagttgcactacat |
79 |
Q |
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|||||| ||| ||||||||||| ||||| ||||| | ||||||||| |||||||||||||||||||||||||||||| |
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| T |
36406467 |
tgttggcacactgttccctcttgaatcataagataactgcatggattctgttgaaactccaaaaacagttgcactacat |
36406389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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