View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_632 (Length: 229)
Name: NF10145A_low_632
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_632 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 3e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 29104336 - 29104552
Alignment:
| Q |
1 |
tacatatcaagcaatcgaaaaatcttctccggctttgatttctttgtttttgcaacgacttcaggaaatctgaaaagcaaaatagctccattcttagaaa |
100 |
Q |
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| T |
29104336 |
tacatatcaagcaagcgaaaaatcttctccggctttgatttctttgtttttgcaacgacttcaggaaatcttaaaagtaaaatagctccatccttagaaa |
29104435 |
T |
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| Q |
101 |
tctcagcaaaacaagcttctttgatggaattattgatggaattcgaagcgaagattcgatcgcagaggttcctctctccggcgaagagcgtcctcactga |
200 |
Q |
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| T |
29104436 |
tctcagcaaaacaagcttct------------ttgatggaattcgaagcgaagattcgatcgcagaggttcctctctccggcgaagagcgtcctcactga |
29104523 |
T |
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| Q |
201 |
gatcttaaccgcttctaaccaactgttga |
229 |
Q |
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| T |
29104524 |
gatcttaaccgcctctaaccaactgttga |
29104552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 29090075 - 29090291
Alignment:
| Q |
1 |
tacatatcaagcaatcgaaaaatcttctccggctttgatttctttgtttttgcaacgacttcaggaaatctgaaaagcaaaatagctccat-tcttagaa |
99 |
Q |
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|||||||||||||| || |||||||||||||| | ||||||||||||| ||||||| ||||||||||| || || | | ||||||||| |||| ||| |
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| T |
29090075 |
tacatatcaagcaaacggaaaatcttctccggtgtccatttctttgttttcgcaacgaattcaggaaatcgtaagagaagagtagctccatctctt-gaa |
29090173 |
T |
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| Q |
100 |
atctcagcaaaacaagcttctttgatggaattattgatggaattcgaagcgaagattcgatcgcagaggttcctctctccggcgaagagcgtcctcactg |
199 |
Q |
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|| ||| |||||||||||||| |||| ||||||||||||||| ||||| ||||||||||| |||||||| | ||||| || ||||||| |
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| T |
29090174 |
atttcaccaaaacaagcttctctgat------------ggaattcgaagcgaaaattcgttcgcagaggtttctctctccagaaaagagtgttctcactg |
29090261 |
T |
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| Q |
200 |
agatcttaaccgcttctaaccaactgttga |
229 |
Q |
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| T |
29090262 |
agatcttaactgcctctaaccaacagttga |
29090291 |
T |
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