View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10145A_low_633 (Length: 229)
Name: NF10145A_low_633
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_633 |
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| [»] chr2 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0416 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 5 - 229
Target Start/End: Complemental strand, 44394905 - 44394681
Alignment:
| Q |
5 |
cgccttaaaggaggagaaatccaacccaacgcgcagctgagaacaaagccaactccaaagcgtcaccacaaacttacaacgaaggaacaaatgatccgaa |
104 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44394905 |
cgccttaaaggaggagaaatccagcccaacgcgcagctgagaacaaagccaactccaaagcgtcaccacaaacttacaacgaaggaacaaatgatccgaa |
44394806 |
T |
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| Q |
105 |
gtttcgacttgctccaaacaaaagctacacatcgaaaccaaagcacacccacgtgaagagaggttatcatccgtgggtaatctatcatgagccagcctcc |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44394805 |
gtttcgacttgctccaaacaaaagctacacatcgaaaccaaagcacacccacgtgaagagaggttatcatccgtgggtaatctatcatgagccagcctcc |
44394706 |
T |
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| Q |
205 |
aacaaataaaagaatgagaaggagg |
229 |
Q |
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| T |
44394705 |
aacaaataaaagaatgagaaggagg |
44394681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 5 - 229
Target Start/End: Complemental strand, 44379325 - 44379101
Alignment:
| Q |
5 |
cgccttaaaggaggagaaatccaacccaacgcgcagctgagaacaaagccaactccaaagcgtcaccacaaacttacaacgaaggaacaaatgatccgaa |
104 |
Q |
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||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44379325 |
cgccttaaaggaggagaaatccagcccaacgagcagctgagaacaaagccaactccaaagcgtcaccacaaacttacaacgaaggaacaaatgatccgaa |
44379226 |
T |
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| Q |
105 |
gtttcgacttgctccaaacaaaagctacacatcgaaaccaaagcacacccacgtgaagagaggttatcatccgtgggtaatctatcatgagccagcctcc |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44379225 |
gtttcgacttgctccaaacaaaagctacacatcgaaaccaaagcacacccacgtgaagagaggttatcatccgtgggtaatctatcatgagccagcctcc |
44379126 |
T |
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| Q |
205 |
aacaaataaaagaatgagaaggagg |
229 |
Q |
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||||||||||||||||||||||||| |
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| T |
44379125 |
aacaaataaaagaatgagaaggagg |
44379101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 7794312 - 7794540
Alignment:
| Q |
1 |
tcagcgccttaaaggaggagaaatccaacccaacgcgcagctgagaacaaagccaactccaaagcgtcaccacaaacttacaacgaaggaacaaatgatc |
100 |
Q |
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|||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7794312 |
tcagcgccttaatggaggagaaatccagcccaacgtgcagctgagaacaaagccaactccaaagcgtcaccacaaacttacagcgaaggaacaaatgatc |
7794411 |
T |
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| Q |
101 |
cgaagtttcgacttgctccaaacaaaagctacacatcgaaaccaaagcacacccacgtgaagagaggttatcatccgtgggtaatctatcatgagccagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7794412 |
cgaagtttcgacttgctccaaacaaaagctacacatcgaaaccaaagcacacccacgtgaagagaggttatcatccgtgggtaatctatcatgagccagc |
7794511 |
T |
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| Q |
201 |
ctccaacaaataaaagaatgagaaggagg |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
7794512 |
ctccaacaaataaaagaatgagaaggagg |
7794540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0416 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: scaffold0416
Description:
Target: scaffold0416; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 2 - 229
Target Start/End: Complemental strand, 13935 - 13708
Alignment:
| Q |
2 |
cagcgccttaaaggaggagaaatccaacccaacgcgcagctgagaacaaagccaactccaaagcgtcaccacaaacttacaacgaaggaacaaatgatcc |
101 |
Q |
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||||||||||| |||||||||||||| ||||| | ||||||| |||| |||||| ||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
13935 |
cagcgccttaatggaggagaaatccagcccaatgtgcagctgtaaacagagccaattccaaagcgccaccacaaacttacaacgaagaaacaaatgatca |
13836 |
T |
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| Q |
102 |
gaagtttcgacttgctccaaacaaaagctacacatcgaaaccaaagcacacccacgtgaagagaggttatcatccgtgggtaatctatcatgagccagcc |
201 |
Q |
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||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||| ||||| |||||| ||||||||||||||||||| |||| |
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| T |
13835 |
gaagtttcgacttgctccaaacaaaggctacatatcgaaaccaatgcacacccacgtgaagaaaggttgtcatccatgggtaatctatcatgagcaagcc |
13736 |
T |
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| Q |
202 |
tccaacaaataaaagaatgagaaggagg |
229 |
Q |
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||||| |||||||||||||||| ||||| |
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| T |
13735 |
tccaaaaaataaaagaatgagatggagg |
13708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 2 - 229
Target Start/End: Original strand, 31553359 - 31553586
Alignment:
| Q |
2 |
cagcgccttaaaggaggagaaatccaacccaacgcgcagctgagaacaaagccaactccaaagcgtcaccacaaacttacaacgaaggaacaaatgatcc |
101 |
Q |
| |
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|||||||| || ||| |||||||||| ||||| | ||| ||| ||||||||||| |||||| | |||||| |||||||| || || |||||||||| |
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| T |
31553359 |
cagcgcctgaatggaagagaaatccagcccaatgtgcaactgtaaacaaagccaattccaaatagccaccacgaacttacatcgtagaaacaaatgatta |
31553458 |
T |
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| Q |
102 |
gaagtttcgacttgctccaaacaaaagctacacatcgaaaccaaagcacacccacgtgaagagaggttatcatccgtgggtaatctatcatgagccagcc |
201 |
Q |
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||||||||||| |||||||||||||||||||||||||| |||| ||||||||||| ||||| || || ||||| |||||||||||||||||||| |||| |
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| T |
31553459 |
gaagtttcgacatgctccaaacaaaagctacacatcgataccattgcacacccacgggaagaaagattgtcatcagtgggtaatctatcatgagcaagcc |
31553558 |
T |
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| Q |
202 |
tccaacaaataaaagaatgagaaggagg |
229 |
Q |
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||||| |||||||||||||||| ||||| |
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| T |
31553559 |
tccaaaaaataaaagaatgagatggagg |
31553586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 90 - 181
Target Start/End: Complemental strand, 19179488 - 19179397
Alignment:
| Q |
90 |
aacaaatgatccgaagtttcgacttgctccaaacaaaagctacacatcgaaaccaaagcacacccacgtgaagagaggttatcatccgtggg |
181 |
Q |
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|||||||||||||| |||||||| | | |||||||||||||||||| ||||| | ||||||||||| |||||||| || ||||||||||| |
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| T |
19179488 |
aacaaatgatccgatgtttcgacatttttcaaacaaaagctacacattgaaacaattgcacacccacgggaagagagattgtcatccgtggg |
19179397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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