View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_638 (Length: 228)
Name: NF10145A_low_638
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_638 |
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| [»] chr6 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 10157633 - 10157406
Alignment:
| Q |
1 |
tagacaaatgagaaaatgtgcagattttgannnnnnn-gaaaatccaaaatactaagcatgaaatttggattgtttgatcttgatccaacgtttacccat |
99 |
Q |
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| T |
10157633 |
tagacaaatgataaaatgtgcagattttgattttttttgaaaatccaaaatactaagcatgaaatttggattgtttgatcttgatccaacgtttacccat |
10157534 |
T |
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| Q |
100 |
atccagtgactgcatgaattcagggcctcccatctacatagaatcttgatttgtctggtgtctaacatgtaccggtgctggacacacgtggttacattaa |
199 |
Q |
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| T |
10157533 |
atccagtgactgcatgaattcagggcctcccatctacatagaatcttgatttgtctggtgtctaacatgtatcggtgctggacacacgtggttacattaa |
10157434 |
T |
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| Q |
200 |
atcaattcattttttcaaattattactga |
228 |
Q |
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| T |
10157433 |
atcaattcattttttc-aattattactga |
10157406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 228
Target Start/End: Original strand, 28524489 - 28524539
Alignment:
| Q |
178 |
tggacacacgtggttacattaaatcaattcattttttcaaattattactga |
228 |
Q |
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| T |
28524489 |
tggacacatgtgattacattctatcatttcattttttcaaattattactga |
28524539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 43328519 - 43328475
Alignment:
| Q |
180 |
gacacacgtggttacattaaatcaattcattttttcaaattatta |
224 |
Q |
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| T |
43328519 |
gacacatgtggttacattaaattatttcattttctcaaattatta |
43328475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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