View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_64 (Length: 405)
Name: NF10145A_low_64
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_64 |
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Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 14 - 403
Target Start/End: Complemental strand, 28527216 - 28526828
Alignment:
| Q |
14 |
atggacatcactttcccttaatgaaatgttgtcaaggagaaatagaaagcaacaaccaacagtgtagagtacaggggatatactactggaannnnnnnat |
113 |
Q |
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| T |
28527216 |
atggacatcactttcccttaatgaaatgttgtcaaggagaaatagaaagcaacaaccaacagtgtagagtacaggggatatactactggaatttttt-at |
28527118 |
T |
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| Q |
114 |
cagtaaagatttaagtcaaaagtatcttagaacaagacctagagctgcctaaccctatcctctgaaaagagtttaacaaaaaagacaaagcatccgagag |
213 |
Q |
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| T |
28527117 |
cagtaaagatttaagtcaaaagtatcttagaacaagacctagagctgcctaaccctatcctctgaaaagagtttaacaaaaaagacaaagcatccgagag |
28527018 |
T |
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| Q |
214 |
aaggagtgtttctctcaataaattaaaccaatggatatcagaaccctacattcttaacttagctaaattaatcctcacttgttcatttgtatttgaaatt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28527017 |
aaggagtgtttctctcaataaattaaaccaatggatatcagaaccctacattcttaacttagctaaattaatcctcacttgttcatttgtatttgaaatt |
28526918 |
T |
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| Q |
314 |
tcaaaataagtttctgccctagtaatccacccataggatcatctcaattgaaggatggaaaatacaacttaaatgtcaaacagtatccat |
403 |
Q |
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| T |
28526917 |
tcaaaataagtttctgccctagtaatccacccataggatcatctcaattgaaggatggaaaatacaacttaaatgtcaaacagtatccat |
28526828 |
T |
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