View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_640 (Length: 228)

Name: NF10145A_low_640
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_640
NF10145A_low_640
[»] chr7 (12 HSPs)
chr7 (1-228)||(35938989-35939216)
chr7 (115-228)||(35981672-35981785)
chr7 (115-228)||(36003084-36003197)
chr7 (115-228)||(36217907-36218020)
chr7 (118-223)||(35957656-35957761)
chr7 (115-223)||(35946448-35946556)
chr7 (138-228)||(36221921-36222011)
chr7 (144-228)||(35952082-35952166)
chr7 (115-220)||(35977114-35977219)
chr7 (115-220)||(35998526-35998631)
chr7 (124-223)||(32727234-32727333)
chr7 (17-70)||(35957809-35957862)
[»] chr1 (2 HSPs)
chr1 (3-208)||(18117738-18117943)
chr1 (1-228)||(18125371-18125598)


Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 35939216 - 35938989
Alignment:
Q  1 taaaagttggcacagtaggatgcaaaatcattgtgacaacacgcagtaaatcgattgcttcaatgacgggcactgttccctcgtatctattacatggcct 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35939216 taaaagttggcacagtagaatgcaaaatcattgtgacaacacgcagtaaatcgattgcttcaatgacgggcactgttccctcgtatctattacatggcct 35939117  T
Q  101 ttctaaagagaacagtttatctctgtttgtcaagtcagcatttaaggaaggtgaagaagaaaaatatccaaatcttgtgaagattgcaaaggaaattgtg 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35939116 ttctaaagagaacagtttatctctgtttgtcaaatcagcatttaaggaaggtgaagaagaaaaatatccaaatcttgtgaagattgcaaaggaaattgtg 35939017  T
Q  201 aaaaaatgtcaaggagttccactggctg 228  Q
    ||||||||||||||||||||||||||||    
T  35939016 aaaaaatgtcaaggagttccactggctg 35938989  T

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Target: chr7; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 115 - 228
Target Start/End: Complemental strand, 35981785 - 35981672
Alignment:
Q  115 gtttatctctgtttgtcaagtcagcatttaaggaaggtgaagaagaaaaatatccaaatcttgtgaagattgcaaaggaaattgtgaaaaaatgtcaagg 214  Q
    ||||||||||||||||||| |  |||||||||||||||||||||  ||||||||||||||| ||| | || | ||| ||||||||||||||||||| |||    
T  35981785 gtttatctctgtttgtcaaatgggcatttaaggaaggtgaagaaacaaaatatccaaatctagtggatatcggaaaagaaattgtgaaaaaatgtcgagg 35981686  T
Q  215 agttccactggctg 228  Q
    ||||||||| ||||    
T  35981685 agttccactagctg 35981672  T

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Target: chr7; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 115 - 228
Target Start/End: Complemental strand, 36003197 - 36003084
Alignment:
Q  115 gtttatctctgtttgtcaagtcagcatttaaggaaggtgaagaagaaaaatatccaaatcttgtgaagattgcaaaggaaattgtgaaaaaatgtcaagg 214  Q
    ||||||||||||||||||| |  |||||||||||||||||||||  ||||||||||||||| ||| | || | ||| ||||||||||||||||||| |||    
T  36003197 gtttatctctgtttgtcaaatgggcatttaaggaaggtgaagaaacaaaatatccaaatctagtggatatcggaaaagaaattgtgaaaaaatgtcgagg 36003098  T
Q  215 agttccactggctg 228  Q
    ||||||||| ||||    
T  36003097 agttccactagctg 36003084  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 115 - 228
Target Start/End: Original strand, 36217907 - 36218020
Alignment:
Q  115 gtttatctctgtttgtcaagtcagcatttaaggaaggtgaagaagaaaaatatccaaatcttgtgaagattgcaaaggaaattgtgaaaaaatgtcaagg 214  Q
    |||| ||||||||||| || |  ||||| ||||| || ||||||||||||||||||||||| ||| |||||| ||| ||||||||||||||||||   ||    
T  36217907 gtttgtctctgtttgtgaaatgggcattcaaggatggagaagaagaaaaatatccaaatctagtggagattggaaaagaaattgtgaaaaaatgtgctgg 36218006  T
Q  215 agttccactggctg 228  Q
    |||||| |||||||    
T  36218007 agttccgctggctg 36218020  T

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Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 118 - 223
Target Start/End: Complemental strand, 35957761 - 35957656
Alignment:
Q  118 tatctctgtttgtcaagtcagcatttaaggaaggtgaagaagaaaaatatccaaatcttgtgaagattgcaaaggaaattgtgaaaaaatgtcaaggagt 217  Q
    |||||||||||||||| |  ||||| |||||||| |||||| |||| ||||||||||  ||  |||||| ||| ||||||||||||||||| ||||| ||    
T  35957761 tatctctgtttgtcaaatgggcattcaaggaaggcgaagaaaaaaattatccaaatcaagtagagattggaaaagaaattgtgaaaaaatgccaaggggt 35957662  T
Q  218 tccact 223  Q
    ||||||    
T  35957661 tccact 35957656  T

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Target: chr7; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 115 - 223
Target Start/End: Complemental strand, 35946556 - 35946448
Alignment:
Q  115 gtttatctctgtttgtcaagtcagcatttaaggaaggtgaagaagaaaaatatccaaatcttgtgaagattgcaaaggaaattgtgaaaaaatgtcaagg 214  Q
    |||| |||||||||||||| |  ||||| ||||||||||||||| |||| ||||||||||| ||   ||| | ||| ||||||||||||||||| |||||    
T  35946556 gtttgtctctgtttgtcaaatgggcattcaaggaaggtgaagaaaaaaagtatccaaatctagtagcgataggaaaagaaattgtgaaaaaatgccaagg 35946457  T
Q  215 agttccact 223  Q
     ||||||||    
T  35946456 ggttccact 35946448  T

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Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 228
Target Start/End: Original strand, 36221921 - 36222011
Alignment:
Q  138 gcatttaaggaaggtgaagaagaaaaatatccaaatcttgtgaagattgcaaaggaaattgtgaaaaaatgtcaaggagttccactggctg 228  Q
    |||||||| || || ||||||||||||||| ||||||| ||| |||||| ||| ||||||||||||||||||   |||||||| |||||||    
T  36221921 gcatttaaagacggagaagaagaaaaatattcaaatctagtggagattggaaaagaaattgtgaaaaaatgtgctggagttccgctggctg 36222011  T

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Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 228
Target Start/End: Complemental strand, 35952166 - 35952082
Alignment:
Q  144 aaggaaggtgaagaagaaaaatatccaaatcttgtgaagattgcaaaggaaattgtgaaaaaatgtcaaggagttccactggctg 228  Q
    ||||| || |||||| |||||||||||||||| ||  |||||| ||| || | |||||||||||||||||| |||||||||||||    
T  35952166 aaggatggcgaagaaaaaaaatatccaaatctagtagagattggaaaagatactgtgaaaaaatgtcaaggggttccactggctg 35952082  T

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Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 220
Target Start/End: Complemental strand, 35977219 - 35977114
Alignment:
Q  115 gtttatctctgtttgtcaagtcagcatttaaggaaggtgaagaagaaaaatatccaaatcttgtgaagattgcaaaggaaattgtgaaaaaatgtcaagg 214  Q
    ||||||||||||||||||| |  || || |||||||| |||||| |||||||||||||||| ||  |||| | ||| |||||||| ||||| || |||||    
T  35977219 gtttatctctgtttgtcaaatgggcgttcaaggaaggcgaagaaaaaaaatatccaaatctagtagagatcggaaaagaaattgtaaaaaagtgccaagg 35977120  T
Q  215 agttcc 220  Q
     |||||    
T  35977119 ggttcc 35977114  T

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Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 220
Target Start/End: Complemental strand, 35998631 - 35998526
Alignment:
Q  115 gtttatctctgtttgtcaagtcagcatttaaggaaggtgaagaagaaaaatatccaaatcttgtgaagattgcaaaggaaattgtgaaaaaatgtcaagg 214  Q
    ||||||||||||||||||| |  || || |||||||| |||||| |||||||||||||||| ||  |||| | ||| |||||||| ||||| || |||||    
T  35998631 gtttatctctgtttgtcaaatgggcgttcaaggaaggcgaagaaaaaaaatatccaaatctagtagagatcggaaaagaaattgtaaaaaagtgccaagg 35998532  T
Q  215 agttcc 220  Q
     |||||    
T  35998531 ggttcc 35998526  T

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Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 223
Target Start/End: Complemental strand, 32727333 - 32727234
Alignment:
Q  124 tgtttgtcaagtcagcatttaaggaaggtgaagaagaaaaatatccaaatcttgtgaagattgcaaaggaaattgtgaaaaaatgtcaaggagttccact 223  Q
    |||||||||| |  ||||||||||||||||||| ||  ||||||||| |||| ||| | ||||  || ||||||||||||||||||  ||| ||||||||    
T  32727333 tgtttgtcaaatgggcatttaaggaaggtgaagtagttaaatatccagatctcgtgcatattggcaaagaaattgtgaaaaaatgtgcaggggttccact 32727234  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 35957862 - 35957809
Alignment:
Q  17 aggatgcaaaatcattgtgacaacacgcagtaaatcgattgcttcaatgacggg 70  Q
    |||| ||||||| || ||||||||||||||||| || ||||||||||||| |||    
T  35957862 aggaagcaaaattatcgtgacaacacgcagtaactcaattgcttcaatgatggg 35957809  T

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Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 208
Target Start/End: Complemental strand, 18117943 - 18117738
Alignment:
Q  3 aaagttggcacagtaggatgcaaaatcattgtgacaacacgcagtaaatcgattgcttcaatgacgggcactgttccctcgtatctattacatggccttt 102  Q
    |||||||||||||||||| ||||| |||| | |||||||||||| || || ||||| || |||| ||| ||||||||||| ||| | ||| | |||||||    
T  18117943 aaagttggcacagtaggaagcaaagtcatggcgacaacacgcagcaactcaattgcatcgatgatgggtactgttccctcctatgttttaaaaggccttt 18117844  T
Q  103 ctaaagagaacagtttatctctgtttgtcaagtcagcatttaaggaaggtgaagaagaaaaatatccaaatcttgtgaagattgcaaaggaaattgtgaa 202  Q
    |||  || ||| |||||||| ||||||| || |  ||||| |||||||| |||||||| |||||||||||||| ||  |||| | ||| |||||||||||    
T  18117843 ctattgaaaactgtttatctttgtttgtgaaatgggcattcaaggaaggcgaagaagacaaatatccaaatctagttgagataggaaaagaaattgtgaa 18117744  T
Q  203 aaaatg 208  Q
     |||||    
T  18117743 gaaatg 18117738  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 18125598 - 18125371
Alignment:
Q  1 taaaagttggcacagtaggatgcaaaatcattgtgacaacacgcagtaaatcgattgcttcaatgacgggcactgttccctcgtatctattacatggcct 100  Q
    ||||||||||||||  |||| ||||||| || ||||||||||| | ||| || |||||||| |||| ||| | ||||||||| ||| | || || || ||    
T  18125598 taaaagttggcacaagaggaagcaaaattatggtgacaacacgtaataactcaattgcttcgatgatgggtaatgttccctcatatgttttgcaaggtct 18125499  T
Q  101 ttctaaagagaacagtttatctctgtttgtcaagtcagcatttaaggaaggtgaagaagaaaaatatccaaatcttgtgaagattgcaaaggaaattgtg 200  Q
    ||||    || |  |||||||||| |||||||| |  ||||| |||||||| ||||||||||||||||||||||| ||  |||| | ||| || ||||||    
T  18125498 ttctttgaaggattgtttatctctatttgtcaaatgggcattcaaggaaggcgaagaagaaaaatatccaaatctagtagagataggaaaagagattgtg 18125399  T
Q  201 aaaaaatgtcaaggagttccactggctg 228  Q
    |||||||| ||||| |||||||| ||||    
T  18125398 aaaaaatgccaaggggttccactagctg 18125371  T

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