View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_644 (Length: 227)

Name: NF10145A_low_644
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_644
NF10145A_low_644
[»] chr2 (12 HSPs)
chr2 (1-227)||(27619226-27619452)
chr2 (1-227)||(113167-113393)
chr2 (1-227)||(22049000-22049226)
chr2 (1-227)||(24799669-24799895)
chr2 (1-227)||(27623253-27623479)
chr2 (1-227)||(16771307-16771533)
chr2 (33-227)||(23013569-23013763)
chr2 (30-207)||(22289896-22290073)
chr2 (18-218)||(25137463-25137663)
chr2 (29-227)||(18992672-18992867)
chr2 (29-194)||(24173834-24174001)
chr2 (182-215)||(21515054-21515087)
[»] scaffold0112 (1 HSPs)
scaffold0112 (1-227)||(6958-7184)
[»] chr8 (12 HSPs)
chr8 (1-227)||(22037849-22038075)
chr8 (1-227)||(22094901-22095127)
chr8 (1-227)||(21823033-21823259)
chr8 (1-227)||(21951728-21951954)
chr8 (1-227)||(8327181-8327407)
chr8 (1-227)||(8310128-8310354)
chr8 (29-227)||(18400950-18401148)
chr8 (18-218)||(25468970-25469170)
chr8 (18-227)||(22827572-22827781)
chr8 (29-200)||(22286692-22286863)
chr8 (29-196)||(22359097-22359264)
chr8 (67-161)||(19291738-19291832)
[»] chr5 (10 HSPs)
chr5 (1-227)||(30767460-30767686)
chr5 (1-227)||(20442533-20442759)
chr5 (1-227)||(20617821-20618047)
chr5 (1-227)||(24967530-24967756)
chr5 (29-213)||(22321817-22322001)
chr5 (19-218)||(21274957-21275156)
chr5 (29-218)||(25120556-25120745)
chr5 (29-218)||(25179647-25179836)
chr5 (19-218)||(21276504-21276703)
chr5 (23-213)||(21383947-21384137)
[»] chr3 (14 HSPs)
chr3 (1-227)||(13510693-13510919)
chr3 (1-227)||(15640734-15640960)
chr3 (1-227)||(15633243-15633469)
chr3 (1-227)||(13191725-13191951)
chr3 (1-227)||(12191158-12191384)
chr3 (1-227)||(12197802-12198028)
chr3 (1-227)||(11878673-11878899)
chr3 (1-227)||(13140509-13140735)
chr3 (1-227)||(10142718-10142944)
chr3 (1-227)||(10164511-10164737)
chr3 (18-227)||(14069907-14070116)
chr3 (33-207)||(13201044-13201218)
chr3 (19-218)||(14455355-14455552)
chr3 (1-82)||(11867294-11867375)
[»] chr7 (11 HSPs)
chr7 (2-227)||(18275684-18275909)
chr7 (5-227)||(16469842-16470064)
chr7 (1-227)||(13669496-13669722)
chr7 (1-227)||(18597653-18597879)
chr7 (18-227)||(12737315-12737524)
chr7 (29-218)||(16527676-16527865)
chr7 (19-218)||(13373124-13373323)
chr7 (29-218)||(13653673-13653859)
chr7 (29-218)||(11966444-11966634)
chr7 (19-160)||(12387641-12387781)
chr7 (23-110)||(16765373-16765460)
[»] scaffold0164 (1 HSPs)
scaffold0164 (1-227)||(35133-35359)
[»] chr4 (8 HSPs)
chr4 (1-227)||(15264423-15264649)
chr4 (1-227)||(22106620-22106847)
chr4 (1-227)||(1475-1701)
chr4 (1-227)||(15249992-15250218)
chr4 (16-218)||(5873-6075)
chr4 (1-121)||(15303757-15303877)
chr4 (155-227)||(15303687-15303759)
chr4 (19-103)||(15857892-15857976)
[»] chr1 (9 HSPs)
chr1 (1-227)||(21803033-21803259)
chr1 (1-217)||(20233189-20233405)
chr1 (1-227)||(22843382-22843608)
chr1 (2-218)||(8951764-8951983)
chr1 (29-218)||(22467343-22467532)
chr1 (29-218)||(52952169-52952358)
chr1 (18-198)||(8647397-8647577)
chr1 (152-227)||(19786602-19786677)
chr1 (18-93)||(19786507-19786582)
[»] chr6 (13 HSPs)
chr6 (1-227)||(24859575-24859801)
chr6 (1-227)||(20165858-20166084)
chr6 (1-227)||(22771468-22771694)
chr6 (1-227)||(8728330-8728556)
chr6 (29-227)||(2652542-2652740)
chr6 (64-218)||(23613190-23613344)
chr6 (29-218)||(11206828-11207017)
chr6 (19-218)||(18007516-18007715)
chr6 (29-182)||(11215670-11215823)
chr6 (29-213)||(19562120-19562305)
chr6 (29-213)||(22597475-22597659)
chr6 (23-211)||(25776502-25776690)
chr6 (152-227)||(20020617-20020692)
[»] scaffold0078 (1 HSPs)
scaffold0078 (2-227)||(26160-26385)
[»] scaffold0634 (1 HSPs)
scaffold0634 (29-218)||(1005-1194)
[»] scaffold0075 (1 HSPs)
scaffold0075 (16-218)||(45454-45656)
[»] scaffold0020 (1 HSPs)
scaffold0020 (19-227)||(116612-116820)
[»] scaffold0042 (1 HSPs)
scaffold0042 (18-218)||(54925-55125)
[»] scaffold0556 (2 HSPs)
scaffold0556 (107-227)||(59-179)
scaffold0556 (1-73)||(176-248)
[»] scaffold0012 (1 HSPs)
scaffold0012 (37-218)||(187883-188064)
[»] scaffold0004 (1 HSPs)
scaffold0004 (19-218)||(367712-367911)
[»] scaffold0759 (1 HSPs)
scaffold0759 (29-218)||(592-781)
[»] scaffold0117 (1 HSPs)
scaffold0117 (24-213)||(44349-44538)
[»] scaffold1589 (1 HSPs)
scaffold1589 (19-227)||(920-1129)
[»] scaffold0396 (1 HSPs)
scaffold0396 (29-218)||(5763-5952)
[»] scaffold0346 (2 HSPs)
scaffold0346 (34-207)||(692-865)
scaffold0346 (109-227)||(18070-18188)
[»] scaffold0326 (1 HSPs)
scaffold0326 (19-168)||(17040-17189)
[»] scaffold0750 (1 HSPs)
scaffold0750 (29-213)||(1922-2105)
[»] scaffold1058 (1 HSPs)
scaffold1058 (23-213)||(1298-1487)
[»] scaffold0031 (1 HSPs)
scaffold0031 (23-227)||(25500-25704)
[»] scaffold1092 (1 HSPs)
scaffold1092 (117-213)||(15-110)
[»] scaffold0023 (1 HSPs)
scaffold0023 (1-51)||(119213-119263)
[»] scaffold0213 (1 HSPs)
scaffold0213 (29-207)||(23265-23443)
[»] scaffold0506 (1 HSPs)
scaffold0506 (30-82)||(6439-6491)


Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 27619452 - 27619226
Alignment:
Q  1 gtaattcagttgctcaatattggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaa 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  27619452 gtaattcagttgctcaatattggcagcactacctaactgacaatcaacacctatatgaccggatataccacagatttcacaaggaggggatgcagaagaa 27619353  T
Q  101 ggtgcgacagcattagcattaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 200  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27619352 ggtgcgacagcattaacattaagtttttcaaatttttgggttaatgcctcaaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 27619253  T
Q  201 cttttttagagggagtaggagtggtga 227  Q
    |||| ||||||||||||||||||||||    
T  27619252 ctttcttagagggagtaggagtggtga 27619226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 113393 - 113167
Alignment:
Q  1 gtaattcagttgctcaatattggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaa 100  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  113393 gtaattcagttgctcaatattggcaacactacctaactgacaatcaacacctatatgaccggatataccacagacttcacaaggagggggtgcagaagaa 113294  T
Q  101 ggtgcgacagcattagcattaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 200  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  113293 ggtgtgacagcattaacattaagtttttcaaatttttgggttaatgcctcaaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 113194  T
Q  201 cttttttagagggagtaggagtggtga 227  Q
    |||| ||||||||||||||||||||||    
T  113193 ctttcttagagggagtaggagtggtga 113167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 22049000 - 22049226
Alignment:
Q  1 gtaattcagttgctcaatattggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaa 100  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  22049000 gtaattcagttgctcaatgttggcagcactacctaactgacaatcaacacctatatgaccagttataccacagatttcacaaggaggggatgcagaagaa 22049099  T
Q  101 ggtgcgacagcattagcattaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 200  Q
    |||| |||||||||| ||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  22049100 ggtgggacagcattaacattaagtttttcaattttttgtgttaatgcctcaaccttagcagcaaggtggttatattcagagacttcgtgtatacctgcct 22049199  T
Q  201 cttttttagagggagtaggagtggtga 227  Q
    |||| ||||||||||||||||||||||    
T  22049200 ctttcttagagggagtaggagtggtga 22049226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 24799669 - 24799895
Alignment:
Q  1 gtaattcagttgctcaatattggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaa 100  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  24799669 gtaattcagttgctcaatgttggcagcactacctaactgacaatcaacacctatatgaccagttataccacagatttcacaaggaggggatgcagaagaa 24799768  T
Q  101 ggtgcgacagcattagcattaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 200  Q
    |||| |||||||||| ||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  24799769 ggtgggacagcattaacattaagtttttcaattttttgtgttaatgcctcaaccttagcagcaaggtggttatattcagagacttcgtgtatacctgcct 24799868  T
Q  201 cttttttagagggagtaggagtggtga 227  Q
    |||| ||||||||||||||||||||||    
T  24799869 ctttcttagagggagtaggagtggtga 24799895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 27623479 - 27623253
Alignment:
Q  1 gtaattcagttgctcaatattggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaa 100  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  27623479 gtaattcagttgctcaatgttggcagcactacctaactgacaatcaacacctatatgaccagttataccacagatttcacaaggaggggatgcagaagaa 27623380  T
Q  101 ggtgcgacagcattagcattaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 200  Q
    |||| |||||||||| ||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  27623379 ggtgggacagcattaacattaagtttttcaattttttgtgttaatgcctcaaccttagcagcaaggtggttatattcagagacttcgtgtatacctgcct 27623280  T
Q  201 cttttttagagggagtaggagtggtga 227  Q
    |||| ||||||||||||||||||||||    
T  27623279 ctttcttagagggagtaggagtggtga 27623253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 16771533 - 16771307
Alignment:
Q  1 gtaattcagttgctcaatattggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaa 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||  |||    
T  16771533 gtaattcagttgctcaatattggcagcactacctaactgacaatcaacacctgtatgaccagttataccacagacttcacaagtaggggatgcaggggaa 16771434  T
Q  101 ggtgcgacagcattagcattaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 200  Q
    |||  | |||||||| ||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  16771433 ggttgggcagcattaacattaagtttttcaattttttgtgttaatgcctcaaccttagcagcaaggtggttatattcatagacttcgtgtatacctgcct 16771334  T
Q  201 cttttttagagggagtaggagtggtga 227  Q
    |||| ||||||||||||||||||||||    
T  16771333 ctttcttagagggagtaggagtggtga 16771307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 33 - 227
Target Start/End: Complemental strand, 23013763 - 23013569
Alignment:
Q  33 ctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaaggtgcgacagcattagcattaagtttttcaaa 132  Q
    ||||||||||||||||||| ||||||||   ||||| ||||| |||||||||||| |||  || || ||||| ||||||| || ||||||||||||||||    
T  23013763 ctaactgacaatcaacaccaatatgaccaaatatactacagatttcacaaggaggagatataggagtaggtgtgacagcactaacattaagtttttcaaa 23013664  T
Q  133 tttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcctcttttttagagggagtaggagtggtga 227  Q
    ||||||||||| ||| || ||||||||||||||||| | ||| |||||||||||||| ||||||| ||||||| ||||||| |||| ||| ||||    
T  23013663 tttttgggttagtgcatccaccttagcagcaaggtgatcatagtcagagacttcgtacatacctgactcttttctagagggtgtagaagtcgtga 23013569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 30 - 207
Target Start/End: Complemental strand, 22290073 - 22289896
Alignment:
Q  30 tacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaaggtgcgacagcattagcattaagtttttc 129  Q
    |||||||||||||||||||||| ||||||||  |||||||||||| |||||||||||| |||| || ||||||||||||||||||| ||||||  || ||    
T  22290073 tacctaactgacaatcaacaccaatatgaccaattataccacagatttcacaaggaggagatgtaggagaaggtgcgacagcattaacattaaacttatc 22289974  T
Q  130 aaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcctctttttt 207  Q
    ||||||||| ||||| || || ||||||||||| ||||| | ||| | |||||||||||| ||||||||||| |||||    
T  22289973 aaatttttgagttaaagcatcaaccttagcagctaggtgatcatagttagagacttcgtacatacctgcctccttttt 22289896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 25137463 - 25137663
Alignment:
Q  18 tattggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaaggtgcgacagcattagc 117  Q
    |||| ||||| ||||||||||||||||||||||| ||||||||   ||||||||| |  ||||||||||| ||||||| || ||||| || |||| || |    
T  25137463 tattagcagcactacctaactgacaatcaacaccaatatgaccaaatataccacaaatgtcacaaggaggagatgcaggagtaggtgtgatagcactaac 25137562  T
Q  118 attaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcctcttttttagagggagta 217  Q
    ||| |||||||||||||||||||||| ||| || |||||| |||||||||| | ||| ||||||||||| || |||||||||||||| |||||||| |||    
T  25137563 atttagtttttcaaatttttgggttagtgcatcaaccttaccagcaaggtgatcatagtcagagacttcatacatacctgcctctttcttagagggtgta 25137662  T
Q  218 g 218  Q
    |    
T  25137663 g 25137663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 29 - 227
Target Start/End: Original strand, 18992672 - 18992867
Alignment:
Q  29 ctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaaggtgcgacagcattagcattaagttttt 128  Q
    |||||||||| |||||||||||| ||||||||   ||||||||| | |||||||||||   ||| || || ||| | |||| ||||| ||||||||||||    
T  18992672 ctacctaactaacaatcaacaccaatatgaccaaatataccacaaatttcacaaggag---atgtaggagtaggggtgacaacattaacattaagttttt 18992768  T
Q  129 caaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcctcttttttagagggagtaggagtggtga 227  Q
    |||||||| || ||| ||| || ||||||||||||||||| | ||| ||| |||||||||| ||||||||||||||||||||||| |||| ||| ||||    
T  18992769 caaattttcggtttagtgcatccaccttagcagcaaggtgatcataatcaaagacttcgtacatacctgcctcttttttagagggtgtagaagtagtga 18992867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 29 - 194
Target Start/End: Original strand, 24173834 - 24174001
Alignment:
Q  29 ctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaaggtgcgacagcattagcattaagttttt 128  Q
    |||||||||||  |||||||||| ||||||||   ||||||||| | |||||||||| | ||||||  || ||||| ||||||| || |||| |||||||    
T  24173834 ctacctaactggaaatcaacaccaatatgaccaaatataccacaaatttcacaaggaagagatgcaagagtaggtgtgacagcactaacatttagttttt 24173933  T
Q  129 caaatttttgggttaat--gcctcgaccttagcagcaaggtggttatattcagagacttcgtatatac 194  Q
    ||||||||||||||| |  || || |||||||||||||| || | ||| | |||||||||||| ||||    
T  24173934 caaatttttgggttagtgcgcatcaaccttagcagcaagatgatcatagttagagacttcgtacatac 24174001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 215
Target Start/End: Original strand, 21515054 - 21515087
Alignment:
Q  182 acttcgtatatacctgcctcttttttagagggag 215  Q
    ||||| ||||||||||||||||||||||||||||    
T  21515054 acttcatatatacctgcctcttttttagagggag 21515087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 7184 - 6958
Alignment:
Q  1 gtaattcagttgctcaatattggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaa 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7184 gtaattcagttgctcaatattggcagcactacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaa 7085  T
Q  101 ggtgcgacagcattagcattaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 200  Q
    |||| |||||||||| ||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  7084 ggtgggacagcattaacattaagtttttcaattttttgtgttaatgcctcaaccttagcagcaaggtggttatattcagagacttcgtgtatacctgcct 6985  T
Q  201 cttttttagagggagtaggagtggtga 227  Q
    |||| ||||||||||||||||||||||    
T  6984 ctttcttagagggagtaggagtggtga 6958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 22037849 - 22038075
Alignment:
Q  1 gtaattcagttgctcaatattggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaa 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||    
T  22037849 gtaattcagttgctcaatattggcagcactacctaactgacaatcaacaccgatatgaccggatataccacagatttcacaaggaggggatgcagaagaa 22037948  T
Q  101 ggtgcgacagcattagcattaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 200  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  22037949 ggtgtgacagcattaacattaagtttttcaaatttttgggttaatgcctcaaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 22038048  T
Q  201 cttttttagagggagtaggagtggtga 227  Q
    |||| |||||||||||||||| |||||    
T  22038049 ctttcttagagggagtaggagcggtga 22038075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 22095127 - 22094901
Alignment:
Q  1 gtaattcagttgctcaatattggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaa 100  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  22095127 gtaattcagttgctcaatattggcagcactacttaactgacaatcaacacctatatgaccggatataccacagacttcacaaggaggggatgcagaagaa 22095028  T
Q  101 ggtgcgacagcattagcattaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 200  Q
    |||| |||| ||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  22095027 ggtgtgacaacattaacgttaagtttttcaaatttttgggttaatgcctcaaccttagcagcaaggtgattatattcagagactttgtatatacctgcct 22094928  T
Q  201 cttttttagagggagtaggagtggtga 227  Q
    |||| ||||||||||||||||||||||    
T  22094927 ctttcttagagggagtaggagtggtga 22094901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 21823259 - 21823033
Alignment:
Q  1 gtaattcagttgctcaatattggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaa 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||    
T  21823259 gtaattcagttgctcaatattggcagcactacctaactgacaatcaacaccgatatgaccggatataccacagatttcacaaggaggggatgcagaagaa 21823160  T
Q  101 ggtgcgacagcattagcattaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 200  Q
    | || |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  21823159 gttgtgacagcattaacattaagtttttcaaatttttgggttaatgcctcaaccttagcagcaaggtgattatattcagagacttcgtgtatacctgcct 21823060  T
Q  201 cttttttagagggagtaggagtggtga 227  Q
    |||| |||||||||||||||| |||||    
T  21823059 ctttcttagagggagtaggagcggtga 21823033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 21951954 - 21951728
Alignment:
Q  1 gtaattcagttgctcaatattggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaa 100  Q
    |||||||||||||||| |||||||||| |||||||  |||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||    
T  21951954 gtaattcagttgctcagtattggcagcactacctatttgacaatcaacaccgatatgaccggatataccacagatttcacaaggaggggatgcagaagaa 21951855  T
Q  101 ggtgcgacagcattagcattaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 200  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  21951854 ggtgcgacaacattaacattaagtttttcaaatttttgggttaatgcctcaaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 21951755  T
Q  201 cttttttagagggagtaggagtggtga 227  Q
    |||| |||||||||||||||| |||||    
T  21951754 ctttcttagagggagtaggagcggtga 21951728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 8327181 - 8327407
Alignment:
Q  1 gtaattcagttgctcaatattggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaa 100  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||| ||||    
T  8327181 gtaatttagttgctcaatattggcagcactacctaactgacaatcaacacctgtatgaccagttataccacagacttcacaagtaggggatgcaggagaa 8327280  T
Q  101 ggtgcgacagcattagcattaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 200  Q
    |||| | |||||||| ||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8327281 ggtggggcagcattaacattaagtttttcaattttttgtgttaatgcctcaaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 8327380  T
Q  201 cttttttagagggagtaggagtggtga 227  Q
    |||| ||||||||||||||||||||||    
T  8327381 ctttcttagagggagtaggagtggtga 8327407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 8310354 - 8310128
Alignment:
Q  1 gtaattcagttgctcaatattggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaa 100  Q
    |||||||||||||||||| || ||| | |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||    
T  8310354 gtaattcagttgctcaatgtttgcaacactacctaactgacaatcaacacctatatgaccagttataccacagatttcacaaggacgggatgcagaagaa 8310255  T
Q  101 ggtgcgacagcattagcattaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 200  Q
    |||| |||||||||| ||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  8310254 ggtgggacagcattaacattaagtttttcaattttttgtgttaatgcctcaaccttagcagcaaggtggttatattcagagacttcgtgtatacctgcct 8310155  T
Q  201 cttttttagagggagtaggagtggtga 227  Q
    |||| ||||||||||||||||||||||    
T  8310154 ctttcttagagggagtaggagtggtga 8310128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 29 - 227
Target Start/End: Complemental strand, 18401148 - 18400950
Alignment:
Q  29 ctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaaggtgcgacagcattagcattaagttttt 128  Q
    ||||||||||||||||||||||| ||||||||   ||||||||||| ||| |||||||| |||| || |||||||  |||||||||| ||||||||||||    
T  18401148 ctacctaactgacaatcaacaccaatatgaccaaatataccacagatttcgcaaggaggagatgtaggagaaggtatgacagcattaacattaagttttt 18401049  T
Q  129 caaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcctcttttttagagggagtaggagtggtga 227  Q
    |||||||||||||||| || || || |||||||||||||| |  || ||||||||||||||||||||| |||| ||||| ||||| |||| || |||||    
T  18401048 caaatttttgggttaaagcatcaactttagcagcaaggtgatcgtaatcagagacttcgtatatacctacctcctttttggagggtgtagaagcggtga 18400950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 25469170 - 25468970
Alignment:
Q  18 tattggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaaggtgcgacagcattagc 117  Q
    |||||||| | ||||||||||||||||||||||||||||||||   || |||||| | |||||||||||| |||| || |||||||  |||| ||||| |    
T  25469170 tattggcaacactacctaactgacaatcaacacctatatgaccaaatacaccacaaatttcacaaggaggagatgtagtagaaggtatgacaacattaac 25469071  T
Q  118 attaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcctcttttttagagggagta 217  Q
    ||||||||||||||||||||| ||||| || || ||||||||||||||||| | ||| |||||||| || || |||||| |||| ||||||||||| |||    
T  25469070 attaagtttttcaaatttttgagttaaggcatcaaccttagcagcaaggtgatcataatcagagacctcatacataccttcctcctttttagagggtgta 25468971  T
Q  218 g 218  Q
    |    
T  25468970 g 25468970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 22827781 - 22827572
Alignment:
Q  18 tattggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaaggtgcgacagcattagc 117  Q
    |||| ||||| |||||||| |||||||||||||  | ||||||   ||||||||||| |||||||||||| |||| || || ||||| ||||||| || |    
T  22827781 tattagcagcactacctaattgacaatcaacactaacatgaccaaatataccacagatttcacaaggaggagatgtaggagtaggtgtgacagcactaac 22827682  T
Q  118 attaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcctcttttttagagggagta 217  Q
    ||||||||||  |||| ||||||||||||| || ||||||| ||||||||| | ||| |||||||||||||| ||| ||||||||||||||||||| |||    
T  22827681 attaagttttgaaaatctttgggttaatgcatcaaccttagtagcaaggtgatcatagtcagagacttcgtacatatctgcctcttttttagagggtgta 22827582  T
Q  218 ggagtggtga 227  Q
    | || |||||    
T  22827581 gaagcggtga 22827572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 29 - 200
Target Start/End: Complemental strand, 22286863 - 22286692
Alignment:
Q  29 ctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaaggtgcgacagcattagcattaagttttt 128  Q
    |||||||| |||||||||||||| ||||| ||   ||||||||||| ||||||| |||| ||||||| || |||||||| |||| || |||| |||||||    
T  22286863 ctacctaaatgacaatcaacaccaatatgcccaaatataccacagatttcacaaagaggagatgcaggagtaggtgcgatagcactaacatttagttttt 22286764  T
Q  129 caaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 200  Q
    ||||||||||||||| ||| || ||||||||||||||||| | ||| |||||||||||||| ||||||||||    
T  22286763 caaatttttgggttagtgcatcaaccttagcagcaaggtgatcatagtcagagacttcgtacatacctgcct 22286692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 29 - 196
Target Start/End: Complemental strand, 22359264 - 22359097
Alignment:
Q  29 ctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaaggtgcgacagcattagcattaagttttt 128  Q
    ||||||||||||||||||||||||||||||||    | |||||||| |||||||||||| |||| || |||||||| |||||||||| |||| |||||||    
T  22359264 ctacctaactgacaatcaacacctatatgaccaaaaacaccacagatttcacaaggaggagatgtagtagaaggtgtgacagcattaacattgagttttt 22359165  T
Q  129 caaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacct 196  Q
    |||||||||| ||||| || || ||||||||||||||||| |  || |||||||| ||||| ||||||    
T  22359164 caaatttttgagttaaggcatcaaccttagcagcaaggtgatcgtaatcagagacctcgtacatacct 22359097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 161
Target Start/End: Original strand, 19291738 - 19291832
Alignment:
Q  67 accacagacttcacaaggaggggatgcagaagaaggtgcgacagcattagcattaagtttttcaaatttttgggttaatgcctcgaccttagcag 161  Q
    |||||| |||||||||||||| ||| ||| || ||||| ||||||| ||| ||| | | | ||||||||||| |||| ||| || ||||||||||    
T  19291738 accacaaacttcacaaggaggtgatacaggagcaggtgtgacagcactagtattcattgtatcaaatttttgtgttagtgcgtcaaccttagcag 19291832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 30767460 - 30767686
Alignment:
Q  1 gtaattcagttgctcaatattggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaa 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||    
T  30767460 gtaattcagttgctcaatattggcagcactacctaactgacaatcaacaccgatatgaccggatataccacagatttcacaaggaggggatgcagaagaa 30767559  T
Q  101 ggtgcgacagcattagcattaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 200  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30767560 ggtgtgacagcattaacattaagtttttcaaatttttgggttaatgcctcaaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 30767659  T
Q  201 cttttttagagggagtaggagtggtga 227  Q
    |||| |||||||||||||||| |||||    
T  30767660 ctttcttagagggagtaggagcggtga 30767686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 20442533 - 20442759
Alignment:
Q  1 gtaattcagttgctcaatattggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaa 100  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||| |||||| |||||||    
T  20442533 gtaattcagttgctcaatattgacagcactacctaactgacaatcaacaccgatatgaccggatataccacagatttcacaaggaagggatgtagaagaa 20442632  T
Q  101 ggtgcgacagcattagcattaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 200  Q
    |||| |||| ||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  20442633 ggtgtgacaacattaacattaagtttttcaaatttttgggtcaatgcctcaaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 20442732  T
Q  201 cttttttagagggagtaggagtggtga 227  Q
    |||| ||||||||||||| || |||||    
T  20442733 ctttcttagagggagtagaagcggtga 20442759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 20618047 - 20617821
Alignment:
Q  1 gtaattcagttgctcaatattggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaa 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||  |||    
T  20618047 gtaattcagttgctcaatattggcagcactacctaactgacaatcaacacctgtatgaccagttataccacagacttcacaagtaggggatgcaggggaa 20617948  T
Q  101 ggtgcgacagcattagcattaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 200  Q
    |||  | |||||||| ||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  20617947 ggttgggcagcattaacattaagtttttcaattttttgtgttaatgcctcaaccttagcagcaaggtggttatattcagagacttcgtgtatacctgcct 20617848  T
Q  201 cttttttagagggagtaggagtggtga 227  Q
    |||| ||||||||||||||||||||||    
T  20617847 ctttcttagagggagtaggagtggtga 20617821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 24967530 - 24967756
Alignment:
Q  1 gtaattcagttgctcaatattggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaa 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||  |||    
T  24967530 gtaattcagttgctcaatattggcagcactacctaactgacaatcaacacctgtatgaccagttataccacagacttcacaagtaggggatgcaggggaa 24967629  T
Q  101 ggtgcgacagcattagcattaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 200  Q
    |||  | |||||||| ||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  24967630 ggttgggcagcattaacattaagtttttcaattttttgtgttaatgcctcaaccttagcagcaaggtggttatattcagagacttcgtgtatacctgcct 24967729  T
Q  201 cttttttagagggagtaggagtggtga 227  Q
    |||| ||||||||||||||||||||||    
T  24967730 ctttcttagagggagtaggagtggtga 24967756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 29 - 213
Target Start/End: Original strand, 22321817 - 22322001
Alignment:
Q  29 ctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaaggtgcgacagcattagcattaagttttt 128  Q
    ||||||||||||||||||||||| ||||||||   ||||||||||| |||||||||||| |||| || |||||||| |||||||||| ||||||||||||    
T  22321817 ctacctaactgacaatcaacaccgatatgaccaaatataccacagatttcacaaggaggagatgtaggagaaggtgtgacagcattaacattaagttttt 22321916  T
Q  129 caaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcctcttttttagaggg 213  Q
    |||||||||| ||||| || || ||||||| ||||||||| | ||| |||||||| ||||| ||||||||||| ||||| |||||    
T  22321917 caaatttttgagttaaggcatcaaccttagaagcaaggtgatcataatcagagacctcgtacatacctgcctcctttttggaggg 22322001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 21274957 - 21275156
Alignment:
Q  19 attggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaaggtgcgacagcattagca 118  Q
    ||||||||| ||||||||||||||||||||||||||||||||    | |||||| | |||||||||||| |||| || |||||||  |||| ||||| ||    
T  21274957 attggcagcactacctaactgacaatcaacacctatatgaccaaaaacaccacaaatttcacaaggaggagatgtagtagaaggtatgacaacattaaca 21275056  T
Q  119 ttaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcctcttttttagagggagtag 218  Q
    |||||||||||||||||||| ||||| || || |||||||||| |||||||| | | | |||||| ||||| ||||||||||| ||||| ||||| ||||    
T  21275057 ttaagtttttcaaatttttgagttaaggcatcaaccttagcagtaaggtggtcacaattagagacctcgtaaatacctgcctcctttttggagggtgtag 21275156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 29 - 218
Target Start/End: Original strand, 25120556 - 25120745
Alignment:
Q  29 ctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaaggtgcgacagcattagcattaagttttt 128  Q
    ||||||||||||||||||||||| ||||||||   ||||||||||| |||||||||||| |||| || |||||||| |||  ||||| ||||||||||||    
T  25120556 ctacctaactgacaatcaacaccaatatgaccaaatataccacagatttcacaaggaggagatgtaggagaaggtgtgactacattaacattaagttttt 25120655  T
Q  129 caaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcctcttttttagagggagtag 218  Q
    |||||||||  ||||| || || ||||||||||| ||||| | ||| || ||||| ||||| ||||||||||| ||||| ||||| ||||    
T  25120656 caaatttttcagttaaggcatcaaccttagcagcgaggtgatcataatcggagacctcgtacatacctgcctcctttttggagggtgtag 25120745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 29 - 218
Target Start/End: Original strand, 25179647 - 25179836
Alignment:
Q  29 ctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaaggtgcgacagcattagcattaagttttt 128  Q
    ||||||||||||||||||||||| ||||||||   ||||||||||| |||||||||||| |||| || |||||||| |||  ||||| ||||||||||||    
T  25179647 ctacctaactgacaatcaacaccaatatgaccaaatataccacagatttcacaaggaggagatgtaggagaaggtgtgactacattaacattaagttttt 25179746  T
Q  129 caaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcctcttttttagagggagtag 218  Q
    |||||||||  ||||| || || ||||||||||| ||||| | ||| || ||||| ||||| ||||||||||| ||||| ||||| ||||    
T  25179747 caaatttttcagttaaggcatcaaccttagcagcgaggtgatcataatcggagacctcgtacatacctgcctcctttttggagggtgtag 25179836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 21276504 - 21276703
Alignment:
Q  19 attggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaaggtgcgacagcattagca 118  Q
    ||||||||| ||||||||||||||||||||||||||||||||    | |||||| | |||||||||||| |||| || |||||||  |||| ||||| ||    
T  21276504 attggcagcactacctaactgacaatcaacacctatatgaccaaaaacaccacaaatttcacaaggaggagatgtagtagaaggtatgacaacattaaca 21276603  T
Q  119 ttaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcctcttttttagagggagtag 218  Q
    |||||||||| ||||||||| ||||| || || | ||||||||||||||| | ||| |||||||| ||| | ||| ||||||| ||||| ||||| ||||    
T  21276604 ttaagttttttaaatttttgagttaaggcatcaaacttagcagcaaggtgatcataatcagagacctcgaacatatctgcctcctttttggagggtgtag 21276703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 23 - 213
Target Start/End: Complemental strand, 21384137 - 21383947
Alignment:
Q  23 gcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaaggtgcgacagcattagcattaa 122  Q
    ||||| ||||||| ||| ||||| ||||| ||||||||     ||||||| | ||||||||||||  |||||| || ||| | ||||||| || |||| |    
T  21384137 gcagcactacctagctggcaatctacaccaatatgaccaaaattaccacaaatttcacaaggaggatatgcaggagtaggagtgacagcactaacattta 21384038  T
Q  123 gtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcctcttttttagaggg 213  Q
    ||||||||||||||||||||| ||| || || ||||||||||| || | ||  | |||||||||||| |||||| ||||||||||||||||    
T  21384037 gtttttcaaatttttgggttagtgcatcaactttagcagcaagatgatcatggttagagacttcgtacatacctccctcttttttagaggg 21383947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 13510693 - 13510919
Alignment:
Q  1 gtaattcagttgctcaatattggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaa 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||    
T  13510693 gtaattcagttgctcaatattggcagcactacctaactgacaatcaacacctatatgaccggatataccacagatttcacaaggagggggtgcagaagaa 13510792  T
Q  101 ggtgcgacagcattagcattaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 200  Q
    |||| || ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13510793 ggtgtgatagcattaacattaagtttttcaaatttttgggttaatgcctcaaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 13510892  T
Q  201 cttttttagagggagtaggagtggtga 227  Q
    |||| ||||||||||||||||||||||    
T  13510893 ctttcttagagggagtaggagtggtga 13510919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 15640960 - 15640734
Alignment:
Q  1 gtaattcagttgctcaatattggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaa 100  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  15640960 gtaattcagttgctcaatgttggcagcactacctaactgacaatcaacacctatatgaccagttataccacagatttcacaaggaggggatgcagaagaa 15640861  T
Q  101 ggtgcgacagcattagcattaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 200  Q
    |||| |||||||||| ||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  15640860 ggtgggacagcattaacattaagtttttcaattttttgtgttaatgcctcaaccttagcagcaaggtggttatattcagagacttcgtgtatacctgcct 15640761  T
Q  201 cttttttagagggagtaggagtggtga 227  Q
    |||| ||||||||||||||||||||||    
T  15640760 ctttcttagagggagtaggagtggtga 15640734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 15633243 - 15633469
Alignment:
Q  1 gtaattcagttgctcaatattggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaa 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  15633243 gtaattcagttgctcaatattggcagcactacctaactgacaatcaacacctatatgaccggatataccacagatttcacaaggaggggatgcagaagaa 15633342  T
Q  101 ggtgcgacagcattagcattaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 200  Q
    ||||  ||||||||| |||||||||||||||  |||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||    
T  15633343 ggtgtaacagcattaacattaagtttttcaatcttttgggttaatgcctcatccttagcagcaaggtggttatattcagagacttcatatatacctgcct 15633442  T
Q  201 cttttttagagggagtaggagtggtga 227  Q
    |||| ||||||||||||||||||||||    
T  15633443 ctttcttagagggagtaggagtggtga 15633469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 13191725 - 13191951
Alignment:
Q  1 gtaattcagttgctcaatattggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaa 100  Q
    |||||| |||||||||||||||||||| |||| ||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||| ||||    
T  13191725 gtaatttagttgctcaatattggcagcactacttaactgacaatcaacacctgtatgaccagttataccacagacttcacaagtaggggatgcaggagaa 13191824  T
Q  101 ggtgcgacagcattagcattaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 200  Q
    |||| |||||||||| ||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13191825 ggtgggacagcattaacattaagtttttcaattttttgtgttaatgcctcaaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 13191924  T
Q  201 cttttttagagggagtaggagtggtga 227  Q
    |||| ||||||||||||||||||||||    
T  13191925 ctttcttagagggagtaggagtggtga 13191951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 12191158 - 12191384
Alignment:
Q  1 gtaattcagttgctcaatattggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaa 100  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||||  ||||||| |||||||||||||||||||||| ||||||||||| ||||    
T  12191158 gtaatttagttgctcaatattggcagcactacctaactgacaatcaacaccagtatgaccagttataccacagacttcacaagtaggggatgcaggagaa 12191257  T
Q  101 ggtgcgacagcattagcattaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 200  Q
    |||| | |||||||| ||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12191258 ggtggggcagcattaacattaagtttttcaattttttgtgttaatgcctcaaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 12191357  T
Q  201 cttttttagagggagtaggagtggtga 227  Q
    |||| ||||||||||||||||||||||    
T  12191358 ctttcttagagggagtaggagtggtga 12191384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 12197802 - 12198028
Alignment:
Q  1 gtaattcagttgctcaatattggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaa 100  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||| ||||    
T  12197802 gtaatttagttgctcaatattggcagcactacctaactgacaatcaacacctgtatgaccagttataccacagacttcacaagtaggggatgcaggagaa 12197901  T
Q  101 ggtgcgacagcattagcattaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 200  Q
     ||| | |||||||| ||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12197902 tgtggggcagcattaacattaagtttttcaattttttgtgttaatgcctcaaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 12198001  T
Q  201 cttttttagagggagtaggagtggtga 227  Q
    |||| ||||||||||||||||||||||    
T  12198002 ctttcttagagggagtaggagtggtga 12198028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 11878673 - 11878899
Alignment:
Q  1 gtaattcagttgctcaatattggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaa 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||  |||    
T  11878673 gtaattcagttgctcaatattggcagcactacctaactgacaatcaacacctgtatgaccagttataccacagacttcacaagtaggggatgcaggggaa 11878772  T
Q  101 ggtgcgacagcattagcattaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 200  Q
    |||  | |||||||| ||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11878773 ggttgggcagcattaacattaagtttttcaattttttgtgttaatgcctcaaccttagcagcaaggtggttatattcagagacttcgtgtatacctgcct 11878872  T
Q  201 cttttttagagggagtaggagtggtga 227  Q
    |||| ||||||||||||||||||||||    
T  11878873 ctttcttagagggagtaggagtggtga 11878899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 13140509 - 13140735
Alignment:
Q  1 gtaattcagttgctcaatattggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaa 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| || ||||||||||| ||||||||||||||||||||| |||    
T  13140509 gtaattcagttgctcaatattggcagcactacctaactgacaatcaacacctatgtgactggatataccacagatttcacaaggaggggatgcagaggaa 13140608  T
Q  101 ggtgcgacagcattagcattaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 200  Q
    ||||  ||| ||||| |||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  13140609 ggtgtaacatcattaacattaagtttttcaatcttttgggttaatgcctcaaccttagcagcaaggtggttatattcagagacttcatatatacctgcct 13140708  T
Q  201 cttttttagagggagtaggagtggtga 227  Q
    |||| ||||||||||||||||||||||    
T  13140709 ctttcttagagggagtaggagtggtga 13140735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 10142944 - 10142718
Alignment:
Q  1 gtaattcagttgctcaatattggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaa 100  Q
    |||||| | |||||||||||||||||| ||||||||||||||||| |||||| ||||||| |||||||||||||||||||||| ||||||||||| || |    
T  10142944 gtaatttaattgctcaatattggcagcactacctaactgacaatcgacacctgtatgaccagttataccacagacttcacaagtaggggatgcaggagga 10142845  T
Q  101 ggtgcgacagcattagcattaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 200  Q
    |||| | |||||||| ||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  10142844 ggtggggcagcattaacattaagtttttcaattttttgtgttaatgcctcaaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 10142745  T
Q  201 cttttttagagggagtaggagtggtga 227  Q
    |||| ||||||||||||||||| ||||    
T  10142744 ctttcttagagggagtaggagttgtga 10142718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 10164511 - 10164737
Alignment:
Q  1 gtaattcagttgctcaatattggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaa 100  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||| ||||    
T  10164511 gtaatttagttgctcaatattggcagcactacctaactgacaatcaacacctgtatgaccagttataccacagacttcacaagtaggggatgcaggagaa 10164610  T
Q  101 ggtgcgacagcattagcattaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 200  Q
    |||| | ||| |||| ||||||||||||| | |||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||    
T  10164611 ggtgaggcagtattaacattaagtttttctattttttgtgttaatgcctcaactttagcagcaaggtggttatattcagagacttcgtatatatctgcct 10164710  T
Q  201 cttttttagagggagtaggagtggtga 227  Q
    |||| ||||||||||||||||||||||    
T  10164711 ctttcttagagggagtaggagtggtga 10164737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 14069907 - 14070116
Alignment:
Q  18 tattggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaaggtgcgacagcattagc 117  Q
    |||| ||||| ||||||||||||||||||||||| ||||||||   ||||||||||| |||||||||||| |||| || || ||||| ||||||| || |    
T  14069907 tattagcagcactacctaactgacaatcaacaccaatatgaccaaatataccacagatttcacaaggaggagatgtaggagtaggtgtgacagcactaac 14070006  T
Q  118 attaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcctcttttttagagggagta 217  Q
    |||||||||||||||| ||||||||||||| || ||||||||||||||||| | ||| |||||||||||||| |||||| |||||||||||||||| |||    
T  14070007 attaagtttttcaaatctttgggttaatgcgtcaaccttagcagcaaggtgatcatagtcagagacttcgtacataccttcctcttttttagagggtgta 14070106  T
Q  218 ggagtggtga 227  Q
    | || |||||    
T  14070107 gaagcggtga 14070116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 33 - 207
Target Start/End: Original strand, 13201044 - 13201218
Alignment:
Q  33 ctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaaggtgcgacagcattagcattaagtttttcaaa 132  Q
    ||||||| ||||||||||| ||||||||   ||||||||||| |||||||||||| |||| ||  ||||||| |||||||||| ||||||||||||||||    
T  13201044 ctaactgtcaatcaacaccaatatgaccaaatataccacagatttcacaaggaggagatgtaggtgaaggtgtgacagcattaacattaagtttttcaaa 13201143  T
Q  133 tttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcctctttttt 207  Q
    |||||| ||||| || || ||||||||||| ||||| | ||| || |||| |||||| ||||||||||| |||||    
T  13201144 tttttgagttaaggcatcaaccttagcagcgaggtgatcataatcggagaattcgtacatacctgcctccttttt 13201218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 14455355 - 14455552
Alignment:
Q  19 attggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaaggtgcgacagcattagca 118  Q
    ||||||||| ||||||||||||||||||||||||||||||||   || |||||| | |||||||||||| |||| || |||||||  |||||| ||| ||    
T  14455355 attggcagcactacctaactgacaatcaacacctatatgaccaaatacaccacaaatttcacaaggaggagatgtagtagaaggtatgacagctttaaca 14455454  T
Q  119 ttaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcctcttttttagagggagtag 218  Q
    |||||||||| |||  |||| ||||| || || ||||||||||||||||| | ||| |||||||| ||||| ||| ||||||| ||||| ||||| ||||    
T  14455455 ttaagtttttaaaa--tttgagttaaggcatcaaccttagcagcaaggtgatcataatcagagacctcgtacatatctgcctcctttttggagggtgtag 14455552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 11867294 - 11867375
Alignment:
Q  1 gtaattcagttgctcaatattggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaa 82  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  11867294 gtaatttagttgctcaatattggcagcactacctaactgacaatcaacacctgtatgaccagttataccacagacttcacaa 11867375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 2 - 227
Target Start/End: Complemental strand, 18275909 - 18275684
Alignment:
Q  2 taattcagttgctcaatattggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaag 101  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  18275909 taattcagttgctcaatattcgcagcactacctaactgacaatcaacacctatatgaccggttataccacaaacttcacaaggaggggatgcagaagaag 18275810  T
Q  102 gtgcgacagcattagcattaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcctc 201  Q
    ||| |||||| ||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18275809 gtgggacagctttaacattaagtttttcaattttttgggttaatgcctcaaccttagcagcaaggtggttatattcagagacttcgtatatacctgcctc 18275710  T
Q  202 ttttttagagggagtaggagtggtga 227  Q
    ||| ||| ||||||||||||||||||    
T  18275709 tttcttaaagggagtaggagtggtga 18275684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 5 - 227
Target Start/End: Original strand, 16469842 - 16470064
Alignment:
Q  5 ttcagttgctcaatattggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaaggtg 104  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||| | |||||||||||||||||||||||||||||    
T  16469842 ttcagttgctcaatattggcagcactacctaactgacaatcaacaccgatatgaccggatataccacatatttcacaaggaggggatgcagaagaaggtg 16469941  T
Q  105 cgacagcattagcattaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcctcttt 204  Q
     |||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16469942 tgacagcattaacattaagtttttcaaatttttgggttaatgcttcaaccttagcagcaaggtggttatattcagagacttcgtatatacctgcctcttt 16470041  T
Q  205 tttagagggagtaggagtggtga 227  Q
     |||||||||||||||| |||||    
T  16470042 cttagagggagtaggagcggtga 16470064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 13669722 - 13669496
Alignment:
Q  1 gtaattcagttgctcaatattggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaa 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||  |||    
T  13669722 gtaattcagttgctcaatattggcagcactacctaactgacaatcaacacctgtatgaccagttataccacagacttcacaagtaggggatgcaggggaa 13669623  T
Q  101 ggtgcgacagcattagcattaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 200  Q
    |||  | |||||||| ||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  13669622 ggttgggcagcattaacattaagtttttcaattttttgtgttaatgcctcaaccttagcagcaaggtggttatattcagagacttcgtgtatacctgcct 13669523  T
Q  201 cttttttagagggagtaggagtggtga 227  Q
    |||| ||||||||||||||||||||||    
T  13669522 ctttcttagagggagtaggagtggtga 13669496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 18597653 - 18597879
Alignment:
Q  1 gtaattcagttgctcaatattggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaa 100  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||| | ||||||||||| ||||    
T  18597653 gtaatttagttgctcaatattggcagcactacctaactgacaatcaacacctgtatgaccagttataccacagacttcacatgtaggggatgcaggagaa 18597752  T
Q  101 ggtgcgacagcattagcattaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 200  Q
    |||| | |||||||| ||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  18597753 ggtggggcagcattaacattaagtttttcaattttttgtgttaatgcctcaaccttagcagcaaggtggttatattcagagacttcgtgtatacctgcct 18597852  T
Q  201 cttttttagagggagtaggagtggtga 227  Q
    |||| ||||||||||||||||||||||    
T  18597853 ctttcttagagggagtaggagtggtga 18597879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 12737524 - 12737315
Alignment:
Q  18 tattggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaaggtgcgacagcattagc 117  Q
    |||| ||||| |||||||| ||| |||||||||  ||||||||   ||||||||||| |||||||||||| |||| || || ||||| ||||||| || |    
T  12737524 tattagcagcactacctaattgaaaatcaacacaaatatgaccaaatataccacagatttcacaaggaggagatgtaggagtaggtgagacagcactaac 12737425  T
Q  118 attaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcctcttttttagagggagta 217  Q
    |||| ||||||||||||||| ||||| ||| || ||||||||||||| ||| | ||| |||||||||||||| |||||||||||||||||||| || |||    
T  12737424 attatgtttttcaaatttttcggttagtgcatccaccttagcagcaatgtgatcataatcagagacttcgtacatacctgcctcttttttagaaggtgta 12737325  T
Q  218 ggagtggtga 227  Q
    | ||||||||    
T  12737324 gaagtggtga 12737315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 29 - 218
Target Start/End: Complemental strand, 16527865 - 16527676
Alignment:
Q  29 ctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaaggtgcgacagcattagcattaagttttt 128  Q
    ||||||||||||||||||||||| ||||||||   ||||||||||| |||||||||||| |||| || | |||||| |||||||||| ||||||||||||    
T  16527865 ctacctaactgacaatcaacaccaatatgaccaaatataccacagatttcacaaggaggagatgtaggaaaaggtgtgacagcattaacattaagttttt 16527766  T
Q  129 caaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcctcttttttagagggagtag 218  Q
    |||||||||| ||||| || || ||||||||||| ||||| | ||| |  ||||| ||||| ||||||||||| ||||| ||||||||||    
T  16527765 caaatttttgagttaaggcatcaaccttagcagcgaggtgatcataattggagacctcgtacatacctgcctcctttttggagggagtag 16527676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 13373124 - 13373323
Alignment:
Q  19 attggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaaggtgcgacagcattagca 118  Q
    ||||| ||| || |||| ||||||||||||||||||||||||    |||||| ||| |||||||||||| |||| || |||||||| |||| ||||| ||    
T  13373124 attggaagcactgcctagctgacaatcaacacctatatgaccaaaaataccatagatttcacaaggaggagatgtagtagaaggtgtgacaacattaaca 13373223  T
Q  119 ttaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcctcttttttagagggagtag 218  Q
    |||||||||||||||||||| ||||| || || ||||||||||||||||||| ||| |||||||  ||||| ||||||||||| ||||| ||||| ||||    
T  13373224 ttaagtttttcaaatttttgagttaaggcatcaaccttagcagcaaggtggtcataatcagagatctcgtaaatacctgcctcctttttggagggtgtag 13373323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 29 - 218
Target Start/End: Complemental strand, 13653859 - 13653673
Alignment:
Q  29 ctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaaggtgcgacagcattagcattaagttttt 128  Q
    ||||||||||||||||||||||| ||||||||   ||||||||||| |||||||||||   ||| || |||||||| |||||||||| |||| |||||||    
T  13653859 ctacctaactgacaatcaacaccaatatgaccaaatataccacagatttcacaaggag---atgtaggagaaggtgtgacagcattaacattgagttttt 13653763  T
Q  129 caaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcctcttttttagagggagtag 218  Q
    |||||||||| |||||||| |||||||||||||||||||| | ||| ||| |||| ||||| |||||||||||  |||| ||||| ||||    
T  13653762 caaatttttgagttaatgcatcgaccttagcagcaaggtgatcataatcaaagacctcgtaaatacctgcctcccttttggagggtgtag 13653673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 29 - 218
Target Start/End: Original strand, 11966444 - 11966634
Alignment:
Q  29 ctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaaggtgcgacagcattagcattaag-tttt 127  Q
    |||| |||||||||||||||||| ||||||||   ||||||||||| |||||||||||| |||| || |||||||| |||| ||||| ||||||| ||||    
T  11966444 ctacttaactgacaatcaacaccaatatgaccaaatataccacagatttcacaaggaggagatgtaggagaaggtgtgacatcattaacattaagttttt 11966543  T
Q  128 tcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcctcttttttagagggagtag 218  Q
    ||||||||||| ||||| || || ||||| ||| ||||||| | ||| | |||||| ||||| ||||||||||| ||||||||||| ||||    
T  11966544 tcaaatttttgagttaaggcatcaaccttggcaacaaggtgatcataattagagacctcgtacatacctgcctcctttttagagggtgtag 11966634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 19 - 160
Target Start/End: Original strand, 12387641 - 12387781
Alignment:
Q  19 attggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaaggtgcgacagcattagca 118  Q
    ||||||||| |||||||||| |||||||||||||||||||||    | |||||| | || ||||| ||| ||||||| |||||||| |||||||||| ||    
T  12387641 attggcagcactacctaactaacaatcaacacctatatgaccaaaaacaccacaaattt-acaagaaggagatgcagtagaaggtgtgacagcattaaca 12387739  T
Q  119 ttaagtttttcaaatttttgggttaatgcctcgaccttagca 160  Q
    |||||||||| ||||||||| ||||| || || |||||||||    
T  12387740 ttaagttttttaaatttttgagttaaggcatcaaccttagca 12387781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 16765373 - 16765460
Alignment:
Q  23 gcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaaggtgcgacag 110  Q
    ||||| ||||||| ||||||||||||||| ||||||||   ||||||||||| |||||||||||| |||| || |||||||| |||||    
T  16765373 gcagcactacctagctgacaatcaacaccaatatgaccaaatataccacagatttcacaaggaggagatgtaggagaaggtgtgacag 16765460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 35359 - 35133
Alignment:
Q  1 gtaattcagttgctcaatattggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaa 100  Q
    |||||||||||||||||| ||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35359 gtaattcagttgctcaattttttcagcactacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaa 35260  T
Q  101 ggtgcgacagcattagcattaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 200  Q
    |||| |||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  35259 ggtgggacaacattaacattaagtttttcaaatttttgggttaatgcctcaaccttagcagcaaggtggtgatattcagagacttcgtatatacctgcct 35160  T
Q  201 cttttttagagggagtaggagtggtga 227  Q
    |||| |||||||||||||||| |||||    
T  35159 ctttcttagagggagtaggagcggtga 35133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 179; Significance: 9e-97; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 15264423 - 15264649
Alignment:
Q  1 gtaattcagttgctcaatattggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaa 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||| ||||||||||    
T  15264423 gtaattcagttgctcaatattggcagcactacctaactgacaatcaacaccgatatgaccggatataccacagatttcacaaggagggggtgcagaagaa 15264522  T
Q  101 ggtgcgacagcattagcattaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 200  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||| |||||||||||    
T  15264523 ggtgtgacagcattaacattaagtttttcaaatttttgggttaatgcctcaatcttagcagcaaggtgattatattcagagacttcgtgtatacctgcct 15264622  T
Q  201 cttttttagagggagtaggagtggtga 227  Q
    ||||||||||||||||||||| |||||    
T  15264623 cttttttagagggagtaggagcggtga 15264649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 22106847 - 22106620
Alignment:
Q  1 gtaattcagttgctcaatattggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaa 100  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  22106847 gtaattcagttgctcaatgttggcagcactacctaactgacaatcaacacctatatgaccagttataccacagatttcacaaggaggggatgcagaagaa 22106748  T
Q  101 ggtgcgacagcattagcattaagtttttcaaatttttg-ggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcc 199  Q
    |||| |||||||||| ||||||||||||||| ||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  22106747 ggtgggacagcattaacattaagtttttcaattttttgttgttaatgcctcaaccttagcagcaaggtggttatattcagagacttcgtgtatacctgcc 22106648  T
Q  200 tcttttttagagggagtaggagtggtga 227  Q
    ||||| ||||||||||||||||||||||    
T  22106647 tctttcttagagggagtaggagtggtga 22106620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 1475 - 1701
Alignment:
Q  1 gtaattcagttgctcaatattggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaa 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||  |||    
T  1475 gtaattcagttgctcaatattggcagcactacctaactgacaatcaacacctgtatgaccagttataccacagacttcacaagtaggggatgcaggggaa 1574  T
Q  101 ggtgcgacagcattagcattaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 200  Q
    |||  | |||||||| ||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1575 ggttgggcagcattaacattaagtttttcaattttttgtgttaatgcctcaaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 1674  T
Q  201 cttttttagagggagtaggagtggtga 227  Q
    |||| ||||||||||||||||||||||    
T  1675 ctttcttagagggagtaggagtggtga 1701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 15250218 - 15249992
Alignment:
Q  1 gtaattcagttgctcaatattggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaa 100  Q
    |||||||||||||||||| || ||||| ||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||| |||||||    
T  15250218 gtaattcagttgctcaatgttagcagcactacctaactgacaatcaacaccgatatgaccggatataccacagatttcacaaggaggggatgtagaagaa 15250119  T
Q  101 ggtgcgacagcattagcattaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 200  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||| |||||||| ||    
T  15250118 ggtgtgacagcattaacattaagtttttcaaatttttgggttaatgcctcaaccttagcagcaaggtgattatcttcagagacttcgtgtatacctgtct 15250019  T
Q  201 cttttttagagggagtaggagtggtga 227  Q
    |||| |||||||||||||||| |||||    
T  15250018 ctttcttagagggagtaggagcggtga 15249992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 16 - 218
Target Start/End: Original strand, 5873 - 6075
Alignment:
Q  16 aatattggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaaggtgcgacagcatta 115  Q
    |||||| | ||| ||||||||||||||||||||||| |||||| |   ||||||||||| |||||||||||| || | || |||||||| ||||||||||    
T  5873 aatattagtagcactacctaactgacaatcaacaccaatatgatcaaatataccacagatttcacaaggaggagaagtaggagaaggtgtgacagcatta 5972  T
Q  116 gcattaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcctcttttttagagggag 215  Q
     |||| ||||||||||||||||| |||||||| |||||||||||||||||||| | ||| |||||||| ||||| ||||||||||| ||||| ||||| |    
T  5973 acattgagtttttcaaatttttgagttaatgcatcgaccttagcagcaaggtgatcataatcagagacctcgtaaatacctgcctcctttttggagggtg 6072  T
Q  216 tag 218  Q
    |||    
T  6073 tag 6075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 15303877 - 15303757
Alignment:
Q  1 gtaattcagttgctcaatattggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaa 100  Q
    |||||||||||||||||||||||| || ||||| ||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||    
T  15303877 gtaattcagttgctcaatattggcggcactacccaactgacaatcaacaccgatatgaccggatataccacagatttcacaaggaggggatgcagaagaa 15303778  T
Q  101 ggtgcgacagcattagcatta 121  Q
    |||| |||| ||||| |||||    
T  15303777 ggtgtgacaacattaacatta 15303757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 155 - 227
Target Start/End: Complemental strand, 15303759 - 15303687
Alignment:
Q  155 ttagcagcaaggtggttatattcagagacttcgtatatacctgcctcttttttagagggagtaggagtggtga 227  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  15303759 ttagcagcaaggtggttatatttagagacttcgtatatacctgcctctttcttagagggagtaggagtggtga 15303687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 15857976 - 15857892
Alignment:
Q  19 attggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaaggt 103  Q
    ||||||||| |||||||||||||||||||||||||||||||| |  | |||||| | |||||||||||| |||| || |||||||    
T  15857976 attggcagcactacctaactgacaatcaacacctatatgaccagaaacaccacaaatttcacaaggaggagatgtagtagaaggt 15857892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 179; Significance: 9e-97; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 21803033 - 21803259
Alignment:
Q  1 gtaattcagttgctcaatattggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaa 100  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  21803033 gtaattcagttgctcaatgttggcagcactacctaactgacaatcaacacctatatgaccagttataccacagatttcacaaggaggggatgcagaagaa 21803132  T
Q  101 ggtgcgacagcattagcattaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 200  Q
    |||| |||||||||| ||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||    
T  21803133 ggtgggacagcattaacattaagtttttcaattttttgtgttaatgcctcaaccttagcagcaaggtggttatattcagagacttcgtgtatacctacct 21803232  T
Q  201 cttttttagagggagtaggagtggtga 227  Q
    |||| ||||||||||||||||||||||    
T  21803233 ctttcttagagggagtaggagtggtga 21803259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 20233405 - 20233189
Alignment:
Q  1 gtaattcagttgctcaatattggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaa 100  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||| ||| ||||||||||| ||||||||||||||||||||||| |    
T  20233405 gtaatttagttgctcaatattggcagcactacctaactgacaatcaacaccgatatgatcggatataccacagatttcacaaggaggggatgcagaagga 20233306  T
Q  101 ggtgcgacagcattagcattaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 200  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  20233305 ggtgtgacagcattaacattaagtttttcaaatttttgggttaatgcctcaaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 20233206  T
Q  201 cttttttagagggagta 217  Q
    |||| ||||||||||||    
T  20233205 ctttcttagagggagta 20233189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 22843608 - 22843382
Alignment:
Q  1 gtaattcagttgctcaatattggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaa 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||  |||    
T  22843608 gtaattcagttgctcaatattggcagcactacctaactgacaatcaacacctgtatgaccagttataccacagacttcacaagtaggggatgcaggggaa 22843509  T
Q  101 ggtgcgacagcattagcattaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 200  Q
    |||  | |||||||| ||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  22843508 ggttgggcagcattaacattaagtttttcaattttttgtgttaatgcctcaaccttagcagcaaggtggttatattcagagacttcgtgtatacctgcct 22843409  T
Q  201 cttttttagagggagtaggagtggtga 227  Q
    |||| ||||||||||||||||||||||    
T  22843408 ctttcttagagggagtaggagtggtga 22843382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 2 - 218
Target Start/End: Original strand, 8951764 - 8951983
Alignment:
Q  2 taattcagttgctcaata---ttggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaag 98  Q
    ||||||| ||||||||||   || ||||| |||| ||||||||||||||||||||||| |||   ||||||||| | ||||||||||||  ||| || ||    
T  8951764 taattcatttgctcaatactattagcagcactacgtaactgacaatcaacacctatataaccaaatataccacaaatttcacaaggaggaaatgtaggag 8951863  T
Q  99 aaggtgcgacagcattagcattaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgc 198  Q
     ||||| |||| || || ||||||||||||||||||||||||||||||| || ||||| ||||||||||||| ||| |||||||||||||| ||||||||    
T  8951864 taggtgtgacaacactaacattaagtttttcaaatttttgggttaatgcatcaaccttggcagcaaggtggtcatagtcagagacttcgtacatacctgc 8951963  T
Q  199 ctcttttttagagggagtag 218  Q
    ||| ||||||||||| ||||    
T  8951964 ctcctttttagagggtgtag 8951983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 29 - 218
Target Start/End: Original strand, 22467343 - 22467532
Alignment:
Q  29 ctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaaggtgcgacagcattagcattaagttttt 128  Q
    ||||||||| ||||||||||||| ||||||||   ||||||||||| |||||||||||| ||||  | |||||||| ||| ||||||  |||||||||||    
T  22467343 ctacctaaccgacaatcaacaccaatatgaccaaatataccacagatttcacaaggaggagatgtgggagaaggtgtgactgcattaaaattaagttttt 22467442  T
Q  129 caaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcctcttttttagagggagtag 218  Q
    |||||||||| ||||| || || ||||||||||||||||| | ||| |||||||| ||||| ||||||||||| ||||| ||||| ||||    
T  22467443 caaatttttgagttaaggcatcaaccttagcagcaaggtgatcataatcagagacctcgtacatacctgcctcctttttggagggtgtag 22467532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 29 - 218
Target Start/End: Original strand, 52952169 - 52952358
Alignment:
Q  29 ctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaaggtgcgacagcattagcattaagttttt 128  Q
    ||||||||||||||||||||||| ||||||||   ||||||| ||| |||||  ||||| |||| || |||||||| |||||||||| ||||||||||||    
T  52952169 ctacctaactgacaatcaacaccaatatgaccaaatataccatagatttcacttggaggagatgtaggagaaggtgtgacagcattaacattaagttttt 52952268  T
Q  129 caaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcctcttttttagagggagtag 218  Q
    |||||||||| ||||| || || |||||||||| |||||| | ||| |||||||| ||||| |||||| |||| ||||| ||||| ||||    
T  52952269 caaatttttgagttaaggcatcaaccttagcagtaaggtgatcataatcagagacctcgtacatacctacctcctttttggagggcgtag 52952358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 8647577 - 8647397
Alignment:
Q  18 tattggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaaggtgcgacagcattagc 117  Q
    |||| ||||| ||||||||||||||||||||||  ||||||||   ||||||||||| |||||||||||| |||| || || ||||| ||||||| || |    
T  8647577 tattagcagcactacctaactgacaatcaacactaatatgaccaaatataccacagatttcacaaggaggagatgtaggagtaggtgtgacagcactaac 8647478  T
Q  118 attaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgc 198  Q
    ||||| ||||| |||||||||||| | ||| || ||||||||||||||||| | ||| |||||||||||||| ||||||||    
T  8647477 attaaattttttaaatttttgggtgagtgcatccaccttagcagcaaggtgatcataatcagagacttcgtacatacctgc 8647397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 152 - 227
Target Start/End: Original strand, 19786602 - 19786677
Alignment:
Q  152 accttagcagcaaggtggttatattcagagacttcgtatatacctgcctcttttttagagggagtaggagtggtga 227  Q
    ||||||| ||||||||  | ||| |||||||||||||| ||| ||||||||||||||||||| |||| ||||||||    
T  19786602 accttagaagcaaggttatcatagtcagagacttcgtacatagctgcctcttttttagagggtgtagaagtggtga 19786677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 19786507 - 19786582
Alignment:
Q  18 tattggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgc 93  Q
    |||| ||||| ||||||||| ||||||||||||| ||||||||   ||||||||| | |||||||||||| |||||    
T  19786507 tattagcagcactacctaacggacaatcaacaccaatatgaccaaatataccacatatttcacaaggaggagatgc 19786582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 175; Significance: 2e-94; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 24859575 - 24859801
Alignment:
Q  1 gtaattcagttgctcaatattggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaa 100  Q
    |||||||||||||||||| |||||||| || |||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  24859575 gtaattcagttgctcaatgttggcagcactgcctaactggcaatcaacacctatatgaccagttataccacagatttcacaaggaggggatgcagaagaa 24859674  T
Q  101 ggtgcgacagcattagcattaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 200  Q
    |||| |||||||||| ||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  24859675 ggtgggacagcattaacattaagtttttcaattttttgtgttaatgcctcaaccttagcagcaaggtggttatattcagagacttcgtgtatacctgcct 24859774  T
Q  201 cttttttagagggagtaggagtggtga 227  Q
    |||| ||||||||||||||||||||||    
T  24859775 ctttcttagagggagtaggagtggtga 24859801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 20166084 - 20165858
Alignment:
Q  1 gtaattcagttgctcaatattggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaa 100  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||| ||||    
T  20166084 gtaatttagttgctcaatattggcagcactacctaactgacaatcaacacctgtatgaccagttataccacagacttcacaagtaggggatgcaggagaa 20165985  T
Q  101 ggtgcgacagcattagcattaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 200  Q
    |||| | |||||||| ||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  20165984 ggtggggcagcattaacattaagtttttcaattttttgtgttaatgcctcaaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 20165885  T
Q  201 cttttttagagggagtaggagtggtga 227  Q
    |||| ||||||||||||||||| ||||    
T  20165884 ctttcttagagggagtaggagttgtga 20165858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 22771468 - 22771694
Alignment:
Q  1 gtaattcagttgctcaatattggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaa 100  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||| | ||||    
T  22771468 gtaatttagttgctcaatattggcagcactacctaactgacaatcaacacctgtatgaccagttataccacagacttcacaagtaggggatgcgggagaa 22771567  T
Q  101 ggtgcgacagcattagcattaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 200  Q
    |||| | |||||||| ||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  22771568 ggtgaggcagcattaacattaagtttttcaattttttgtgttaatgcctcaaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 22771667  T
Q  201 cttttttagagggagtaggagtggtga 227  Q
    |||| ||||||||||||||||||||||    
T  22771668 ctttcttagagggagtaggagtggtga 22771694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 8728330 - 8728556
Alignment:
Q  1 gtaattcagttgctcaatattggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaa 100  Q
    |||||| |||||||||||||||||||| |||||||  || ||||||||||| |||||||||| ||||||||| | |||| |  ||||||||| ||||||     
T  8728330 gtaattgagttgctcaatattggcagcactacctagttggcaatcaacaccgatatgaccggatataccacatatttcaaaccgaggggatgtagaagat 8728429  T
Q  101 ggtgcgacagcattagcattaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 200  Q
    |||| |||||||||| ||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8728430 ggtgtgacagcattaacattaagtttttcgaatttttgggttaacgcctcaaccttagcagcaaggtggttatattcagagacttcgtatatacctgcct 8728529  T
Q  201 cttttttagagggagtaggagtggtga 227  Q
    |||| ||||||||||||| || |||||    
T  8728530 ctttcttagagggagtagaagcggtga 8728556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 29 - 227
Target Start/End: Complemental strand, 2652740 - 2652542
Alignment:
Q  29 ctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaaggtgcgacagcattagcattaagttttt 128  Q
    |||||||||| |||||||||||| ||||||||   ||||||||| | |||||||||||| |||| || || ||||| |||| || || ||||||||||||    
T  2652740 ctacctaacttacaatcaacaccaatatgaccaaatataccacatatttcacaaggaggagatgtaggagtaggtgtgacaacactaacattaagttttt 2652641  T
Q  129 caaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcctcttttttagagggagtaggagtggtga 227  Q
    ||||||||||||||| ||| || ||||||| ||||||||| | ||| ||||||||||| || ||||||||||||||||||||||| |||| ||||||||    
T  2652640 caaatttttgggttagtgcatccaccttagtagcaaggtgatcataatcagagacttcatacatacctgcctcttttttagagggtgtagaagtggtga 2652542  T

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Target: chr6; HSP #6
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 64 - 218
Target Start/End: Original strand, 23613190 - 23613344
Alignment:
Q  64 tataccacagacttcacaaggaggggatgcagaagaaggtgcgacagcattagcattaagtttttcaaatttttgggttaatgcctcgaccttagcagca 163  Q
    ||||||||||| |||||||||||| |||| || |||||||| || ||||||| |||||||||||||||||||||| |||||||| |||||||||||||||    
T  23613190 tataccacagatttcacaaggaggagatgtaggagaaggtgtgatagcattaacattaagtttttcaaatttttgagttaatgcatcgaccttagcagca 23613289  T
Q  164 aggtggttatattcagagacttcgtatatacctgcctcttttttagagggagtag 218  Q
    ||||| |  || |||||||| ||||| ||||||||||| ||||||||||| ||||    
T  23613290 aggtgatcttaatcagagacctcgtaaatacctgcctcctttttagagggtgtag 23613344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 29 - 218
Target Start/End: Complemental strand, 11207017 - 11206828
Alignment:
Q  29 ctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaaggtgcgacagcattagcattaagttttt 128  Q
    |||||||| ||||||||||||||  |||||||   ||||||||||| |||||||||||| ||||  | |||||||| |||||||||| |||| |||||||    
T  11207017 ctacctaattgacaatcaacaccagtatgaccatatataccacagatttcacaaggaggagatgtcggagaaggtgtgacagcattaacattgagttttt 11206918  T
Q  129 caaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcctcttttttagagggagtag 218  Q
    |||||||||| ||||||||  ||||||||||| ||||||| | ||| |||||||| ||||| ||||||||||| ||||| ||||| ||||    
T  11206917 caaatttttgagttaatgcaacgaccttagcaacaaggtgatcataatcagagacctcgtaaatacctgcctcctttttggagggtgtag 11206828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 18007715 - 18007516
Alignment:
Q  19 attggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaaggtgcgacagcattagca 118  Q
    ||||||||| ||||||| ||||||||||||||||||||||||    | |||||||| ||||||||||||||||| || |||||||| ||||||||||  |    
T  18007715 attggcagcactacctagctgacaatcaacacctatatgaccaaaaacaccacagatttcacaaggaggggatgtagtagaaggtgtgacagcattaaga 18007616  T
Q  119 ttaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcctcttttttagagggagtag 218  Q
    |||||||||| ||||||||| ||||| || || |  |||||||||||||| | ||| |||||||  ||||| ||||||||||| ||||| ||||| ||||    
T  18007615 ttaagttttttaaatttttgagttaaggcatcaaaattagcagcaaggtgatcataatcagagatctcgtaaatacctgcctcctttttggagggtgtag 18007516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 29 - 182
Target Start/End: Complemental strand, 11215823 - 11215670
Alignment:
Q  29 ctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaaggtgcgacagcattagcattaagttttt 128  Q
    |||||||| ||||||||||||||  |||||||   ||||||||||| |||||||||||| ||||  | |||||||| |||||||||| |||| |||||||    
T  11215823 ctacctaattgacaatcaacaccagtatgaccatatataccacagatttcacaaggaggagatgtcggagaaggtgtgacagcattaacattgagttttt 11215724  T
Q  129 caaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagaga 182  Q
    |||||||||| |||||||| |||||||||||||||||||| | ||| |||||||    
T  11215723 caaatttttgagttaatgcatcgaccttagcagcaaggtgatcataatcagaga 11215670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 29 - 213
Target Start/End: Original strand, 19562120 - 19562305
Alignment:
Q  29 ctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaaggtgcgacagcattagcattaagttttt 128  Q
    ||||||||||||||||||||||| |||||||||  ||||||||||| ||||||| |||| |||| || || ||||| |||  || || |||||| |||||    
T  19562120 ctacctaactgacaatcaacaccaatatgaccgaatataccacagatttcacaatgaggagatgtaggagtaggtgtgactacactaacattaaattttt 19562219  T
Q  129 caaa-tttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcctcttttttagaggg 213  Q
    |||| ||||| ||||| ||| || ||||||||||||||||| | ||| |||||||||||||| ||| ||| |||||||||||||||    
T  19562220 caaatttttttggttagtgcatccaccttagcagcaaggtgatcataatcagagacttcgtacataactggctcttttttagaggg 19562305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 29 - 213
Target Start/End: Original strand, 22597475 - 22597659
Alignment:
Q  29 ctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaaggtgcgacagcattagcattaagttttt 128  Q
    ||||||||||| ||||||||||| ||||||||   ||||||||| | |||||||||||  ||||||| || ||||| |||| || || |||| |||||||    
T  22597475 ctacctaactggcaatcaacaccaatatgaccaaatataccacaaatttcacaaggagaagatgcaggagtaggtgtgacaacactaacatttagttttt 22597574  T
Q  129 caaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcctcttttttagaggg 213  Q
    |||||||||  |||| |||  | |||||||||||||| || | ||| | |||||||||||| ||| |||||||||||||||||||    
T  22597575 caaatttttaagttagtgcagcaaccttagcagcaagatgatcatagttagagacttcgtacatatctgcctcttttttagaggg 22597659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 211
Target Start/End: Complemental strand, 25776690 - 25776502
Alignment:
Q  23 gcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaaggtgcgacagcattagcattaa 122  Q
    ||||| |||||||||| | |||||||| | |||| |||   ||||||||| | |||||||||||| |||| || || ||||| ||||||| || ||||||    
T  25776690 gcagcactacctaacttaaaatcaacatcaatataaccaaatataccacaaatttcacaaggaggagatgtaggagtaggtgtgacagcactaacattaa 25776591  T
Q  123 gtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcctcttttttagag 211  Q
    |||||| |||| ||||||||||| | || |||||||||| | |||| | |||  ||||||||||||| |||||||||||||||| ||||    
T  25776590 gttttttaaatctttgggttaatacatcaaccttagcagaatggtgatcataggcagagacttcgtacatacctgcctctttttaagag 25776502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 152 - 227
Target Start/End: Original strand, 20020617 - 20020692
Alignment:
Q  152 accttagcagcaaggtggttatattcagagacttcgtatatacctgcctcttttttagagggagtaggagtggtga 227  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||    
T  20020617 accttagcagcaaggtggttatattcagagacttcgtgtatacctgcctctttcttagagggggtaggagtggtga 20020692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 2 - 227
Target Start/End: Complemental strand, 26385 - 26160
Alignment:
Q  2 taattcagttgctcaatattggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaag 101  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||| ||||||||    
T  26385 taattcaattgctcaatattggcagcactacctaactgacaatcaacaccgatatgaccggatataccacagatttcacaaggaggggatgtagaagaag 26286  T
Q  102 gtgcgacagcattagcattaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcctc 201  Q
    ||| |||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  26285 gtgtgacagcattaacattaagtttttcaaatttttgggtcaatgcctcaaccttagcagcaaggtggttatattcagagacttcgtatatgcctgcctc 26186  T
Q  202 ttttttagagggagtaggagtggtga 227  Q
    ||| ||||||||||||| || |||||    
T  26185 tttcttagagggagtagaagcggtga 26160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 29 - 218
Target Start/End: Original strand, 1005 - 1194
Alignment:
Q  29 ctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaaggtgcgacagcattagcattaagttttt 128  Q
    ||||||||||||||||||||||| ||||||||   ||||||||||| |||||||||||| |||| || |||||||| |||||||||| |||| |||||||    
T  1005 ctacctaactgacaatcaacaccaatatgaccaaatataccacagatttcacaaggaggagatgtaggagaaggtgtgacagcattaacattgagttttt 1104  T
Q  129 caaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcctcttttttagagggagtag 218  Q
    |||||||||| |||||||| |||||||||||||||||||| | ||| |||||||| ||||| ||||||||||| ||||| ||||| ||||    
T  1105 caaatttttgagttaatgcatcgaccttagcagcaaggtgatcataatcagagacctcgtaaatacctgcctcctttttggagggtgtag 1194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 16 - 218
Target Start/End: Original strand, 45454 - 45656
Alignment:
Q  16 aatattggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaaggtgcgacagcatta 115  Q
    |||||| | ||| ||||||||||||||||||||||| |||||| |   ||||||||||| |||||||||||| || | || |||||||| ||||||||||    
T  45454 aatattagtagcactacctaactgacaatcaacaccaatatgatcaaatataccacagatttcacaaggaggagaagtaggagaaggtgtgacagcatta 45553  T
Q  116 gcattaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcctcttttttagagggag 215  Q
     |||| ||||||||||||||||| |||||||| |||||||||||||||||||| | ||| |||||||| ||||| ||||||||||| ||||| ||||| |    
T  45554 acattgagtttttcaaatttttgagttaatgcatcgaccttagcagcaaggtgatcataatcagagacctcgtaaatacctgcctcctttttggagggtg 45653  T
Q  216 tag 218  Q
    |||    
T  45654 tag 45656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 19 - 227
Target Start/End: Complemental strand, 116820 - 116612
Alignment:
Q  19 attggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaaggtgcgacagcattagca 118  Q
    ||||||||| ||||||| ||||||||||||||||||||||||    |||||||||| |||||||||| | |||| || |||||||| |||||||||| ||    
T  116820 attggcagcactacctagctgacaatcaacacctatatgaccaaaaataccacagatttcacaaggatgagatgtagtagaaggtgtgacagcattaaca 116721  T
Q  119 ttaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcctcttttttagagggagtag 218  Q
    |||||||||||||||||||| ||||| || || ||||||| ||||||||| | ||| |||||||| ||||| ||||||||||| ||||| ||||| ||||    
T  116720 ttaagtttttcaaatttttgagttaaggcatcaaccttagaagcaaggtgatcataatcagagacctcgtacatacctgcctcctttttggagggtgtag 116621  T
Q  219 gagtggtga 227  Q
      |||||||    
T  116620 aggtggtga 116612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 54925 - 55125
Alignment:
Q  18 tattggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaaggtgcgacagcattagc 117  Q
    |||| ||||| ||||||||||| ||||||||||||||||||||   ||||||||| | || ||||||||| |||| || || ||||| ||||||| || |    
T  54925 tattagcagcactacctaactggcaatcaacacctatatgaccaaatataccacaaattttacaaggaggagatgtaggagtaggtgtgacagcactaac 55024  T
Q  118 attaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcctcttttttagagggagta 217  Q
    |||| ||||||||||||||||||||| ||| |||||||||||||||||||| | ||| | |||||| ||||| ||||||||||||||| ||||||| |||    
T  55025 attatgtttttcaaatttttgggttagtgcatcgaccttagcagcaaggtgatcataataagagacctcgtacatacctgcctcttttctagagggtgta 55124  T
Q  218 g 218  Q
    |    
T  55125 g 55125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0556 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: scaffold0556
Description:

Target: scaffold0556; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 179 - 59
Alignment:
Q  107 acagcattagcattaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcctcttttt 206  Q
    ||||||||| |||||||||||||||||||||  |||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |    
T  179 acagcattaacattaagtttttcaaatttttatgttaatgcttcaaccttagcagcaaggtggttataatcagagacttcgtatatacctgcctctttct 80  T
Q  207 tagagggagtaggagtggtga 227  Q
    ||||||||||||||| |||||    
T  79 tagagggagtaggagcggtga 59  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0556; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 248 - 176
Alignment:
Q  1 gtaattcagttgctcaatattggcagccctacctaactgacaatcaacacctatatgaccggttataccacag 73  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||| ||||    
T  248 gtaatttagttgctcaatattggcagcactacctaactgacaatcaacaccgatatgaccggatatactacag 176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 37 - 218
Target Start/End: Complemental strand, 188064 - 187883
Alignment:
Q  37 ctgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaaggtgcgacagcattagcattaagtttttcaaatttt 136  Q
    ||||||||||||||| ||||||||   ||||||||||| |||||||||||| |||| || |||||||| |||||||||| ||||||||||||| ||||||    
T  188064 ctgacaatcaacaccaatatgaccaaatataccacagatttcacaaggaggagatgtaggagaaggtgtgacagcattaacattaagtttttctaatttt 187965  T
Q  137 tgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcctcttttttagagggagtag 218  Q
    || ||||| || || ||||||||||| ||||| | ||| |||||||| ||||| ||||||||||| ||||| ||||| ||||    
T  187964 tgagttaaggcatcaaccttagcagcgaggtgatcatagtcagagacctcgtacatacctgcctcctttttggagggtgtag 187883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 367712 - 367911
Alignment:
Q  19 attggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaaggtgcgacagcattagca 118  Q
    ||||||||| ||||||| |||||||||||||||||| |||||    |||||||||| |||||||||||| |||| || |||||||| |||||||||| ||    
T  367712 attggcagcactacctagctgacaatcaacacctatttgaccaaaaataccacagatttcacaaggaggagatgtagtagaaggtgtgacagcattaaca 367811  T
Q  119 ttaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcctcttttttagagggagtag 218  Q
    || ||||||| ||||||||  ||||| || || ||||||||||||||||| | | | |||||||| ||||| ||||||||||| ||||| ||||| ||||    
T  367812 ttgagttttttaaattttttagttaaggcatcaaccttagcagcaaggtgatcaaaatcagagacctcgtacatacctgcctcctttttggagggcgtag 367911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0759 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: scaffold0759
Description:

Target: scaffold0759; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 29 - 218
Target Start/End: Original strand, 592 - 781
Alignment:
Q  29 ctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaaggtgcgacagcattagcattaagttttt 128  Q
    ||||||||||||||||||||||| ||||||||   ||||||||||| |||||||||| | |||| || |||||||| |||| ||||| ||||||||||||    
T  592 ctacctaactgacaatcaacaccaatatgaccaaatataccacagatttcacaaggaagagatgtagcagaaggtgtgacaacattaacattaagttttt 691  T
Q  129 caaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcctcttttttagagggagtag 218  Q
    |||||||||  ||||| || || ||||||||||| ||||| | ||| || ||||| ||||| ||||||||||| ||||| || |||||||    
T  692 caaattttttagttaaggcatcaaccttagcagcgaggtgatcataatcggagacctcgtacatacctgcctcctttttggatggagtag 781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 24 - 213
Target Start/End: Original strand, 44349 - 44538
Alignment:
Q  24 cagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaaggtgcgacagcattagcattaag 123  Q
    |||| |||||||||||| ||||| |||| |||||||    ||||||||||| |||||| ||||| |||| || || ||||| ||||||| || |||| ||    
T  44349 cagcactacctaactgataatcagcaccaatatgactaaatataccacagatttcacagggaggagatgtaggagtaggtgtgacagcactaacatttag 44448  T
Q  124 tttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcctcttttttagaggg 213  Q
    |||||||||||||||||||| ||| || |||||||||||||| || | ||| | |||||||||||| |||||||||||||||||||||||    
T  44449 tttttcaaatttttgggttagtgcatcaaccttagcagcaagttgatcatagttagagacttcgtacatacctgcctcttttttagaggg 44538  T

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Target: scaffold1589 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold1589
Description:

Target: scaffold1589; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 920 - 1129
Alignment:
Q  19 attggcagccctacctaactgacaatc-aacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaaggtgcgacagcattagc 117  Q
    ||||||||| ||||||||||||||||| |||||||||||||||    | |||||| | |||||||| ||| |||| || |||||||| ||||| ||||      
T  920 attggcagcactacctaactgacaatctaacacctatatgaccaaaaacaccacaaatttcacaagaaggagatgtagtagaaggtgtgacagtattaaa 1019  T
Q  118 attaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcctcttttttagagggagta 217  Q
    ||||||||||||||||||||| ||||| || || ||||||| ||||||||| | ||| |||||||| ||||| ||||||||||| ||||| ||||| |||    
T  1020 attaagtttttcaaatttttgagttaaggcatcaaccttaggagcaaggtgatcataatcagagacctcgtacatacctgcctcctttttggagggtgta 1119  T
Q  218 ggagtggtga 227  Q
    | || |||||    
T  1120 gaagcggtga 1129  T

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Target: scaffold0396 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0396
Description:

Target: scaffold0396; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 29 - 218
Target Start/End: Complemental strand, 5952 - 5763
Alignment:
Q  29 ctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaaggtgcgacagcattagcattaagttttt 128  Q
    ||||||||||||||||||||||| ||||||||   ||||||||||| |||||||||||| |||| || |||||||| |||||| ||  | ||||||||||    
T  5952 ctacctaactgacaatcaacaccaatatgaccaaatataccacagatttcacaaggaggagatgtaggagaaggtgtgacagcttttactttaagttttt 5853  T
Q  129 caaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcctcttttttagagggagtag 218  Q
    |||||||||| ||||  || || ||||||||||| ||||| | ||| || ||||| ||||| ||||||||||| ||||| ||||| ||||    
T  5852 caaatttttgagttatggcatcaaccttagcagcgaggtgatcataatcggagacctcgtacatacctgcctcctttttggagggtgtag 5763  T

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Target: scaffold0346 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: scaffold0346
Description:

Target: scaffold0346; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 34 - 207
Target Start/End: Original strand, 692 - 865
Alignment:
Q  34 taactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaaggtgcgacagcattagcattaagtttttcaaat 133  Q
    |||||||||||||||||| ||||||||   ||||||||| | ||||||||||||  ||| || |||||||| |||||||||| |||||||||||||||||    
T  692 taactgacaatcaacaccaatatgaccaaatataccacaaatttcacaaggaggatatgtaggagaaggtgtgacagcattaacattaagtttttcaaat 791  T
Q  134 ttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcctctttttt 207  Q
    ||||| || || || || ||||||||||||||||| | ||| |||||||| || || ||||||||||| |||||    
T  792 ttttgagtcaaggcatcaaccttagcagcaaggtgatcataatcagagacctcatacatacctgcctccttttt 865  T

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Target: scaffold0346; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 109 - 227
Target Start/End: Original strand, 18070 - 18188
Alignment:
Q  109 agcattagcattaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcctctttttta 208  Q
    ||||||| |||||||||||||||||||||| |||||||| || ||||| ||||||||||| | ||| |  ||||| ||||| ||||||||||| |||||     
T  18070 agcattaacattaagtttttcaaatttttgagttaatgcatcaaccttggcagcaaggtgatcatagttggagacctcgtacatacctgcctcctttttg 18169  T
Q  209 gagggagtaggagtggtga 227  Q
    ||||| ||||  |||||||    
T  18170 gagggcgtagaggtggtga 18188  T

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Target: scaffold0326 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0326
Description:

Target: scaffold0326; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 168
Target Start/End: Complemental strand, 17189 - 17040
Alignment:
Q  19 attggcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaaggtgcgacagcattagca 118  Q
    ||||||||| ||||||||||||||||||||||||||||||||    | |||||| | |||||||| ||| |||| || |||||||| |||||||||| ||    
T  17189 attggcagcactacctaactgacaatcaacacctatatgaccaaaaacaccacaaatttcacaagaaggagatgtagtagaaggtgtgacagcattaaca 17090  T
Q  119 ttaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtg 168  Q
    |||||||||||||||||||| ||||| || || |||||||||||||||||    
T  17089 ttaagtttttcaaatttttgagttaaggcatcaaccttagcagcaaggtg 17040  T

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Target: scaffold0750 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: scaffold0750
Description:

Target: scaffold0750; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 29 - 213
Target Start/End: Complemental strand, 2105 - 1922
Alignment:
Q  29 ctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaaggtgcgacagcattagcattaagttttt 128  Q
    |||||||| |||||||||||||| | ||||||   ||||||||||| |||||||||||| |||| || |||||||| ||||| |||| |||| |||||||    
T  2105 ctacctaattgacaatcaacaccaaaatgaccaaatataccacagatttcacaaggaggagatgtaggagaaggtgtgacagtattaacatttagttttt 2006  T
Q  129 caaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcctcttttttagaggg 213  Q
    |||||||||| ||||| || || ||||||||||||||||| | |||  ||||||| ||||| ||||||||||| ||||| |||||    
T  2005 caaatttttgagttaaggcatcaaccttagcagcaaggtgatcata-acagagacctcgtacatacctgcctcctttttggaggg 1922  T

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Target: scaffold1058 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold1058
Description:

Target: scaffold1058; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 23 - 213
Target Start/End: Original strand, 1298 - 1487
Alignment:
Q  23 gcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaaggtgcgacagcattagcattaa 122  Q
    ||||| ||||||| |||  |||||||||| ||||||||   ||||||| | | |||||||||||||||||||| || ||||| |||| || || |||| |    
T  1298 gcagcactacctagctgggaatcaacaccaatatgaccaaatataccataaatttcacaaggaggggatgcaggagtaggtgtgacaacactaacattta 1397  T
Q  123 gtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcctcttttttagaggg 213  Q
    |||||||||||||| |||||| ||| || |||||||||||||| || | ||| | |||||||||||| |||||||||||||||||||||||    
T  1398 gtttttcaaatttt-gggttagtgcatcaaccttagcagcaagatgatcatagttagagacttcgtacatacctgcctcttttttagaggg 1487  T

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Target: scaffold0031 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 227
Target Start/End: Complemental strand, 25704 - 25500
Alignment:
Q  23 gcagccctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaaggtgcgacagcattagcattaa 122  Q
    ||||| ||||||||||||||||||||||| ||||||||   ||||||||| | |||||||||||| |||| |  || |||||  | ||||  | ||||||    
T  25704 gcagcactacctaactgacaatcaacaccaatatgaccaaatataccacatatttcacaaggaggagatgtaagagtaggtgtaatagcaccaacattaa 25605  T
Q  123 gtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcctcttttttagagggagtaggagt 222  Q
    ||||||||||||||| |||||  |  |  ||||||||||||||||| | | | | |||||||||||| ||||||||||||||||||||||| |||| |||    
T  25604 gtttttcaaatttttcggttagcgtattcaccttagcagcaaggtgatcaaaataagagacttcgtacatacctgcctcttttttagagggtgtagaagt 25505  T
Q  223 ggtga 227  Q
    |||||    
T  25504 ggtga 25500  T

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Target: scaffold1092 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold1092
Description:

Target: scaffold1092; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 117 - 213
Target Start/End: Original strand, 15 - 110
Alignment:
Q  117 cattaagtttttcaaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcctcttttttagaggg 213  Q
    |||| ||||||||||||||| |||||| ||| || |||||||||||||| || | ||| | |||||||||||| |||||||||||||||||||||||    
T  15 catttagtttttcaaatttt-gggttagtgcatcaaccttagcagcaagatgatcatagttagagacttcgtacatacctgcctcttttttagaggg 110  T

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Target: scaffold0023 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 119263 - 119213
Alignment:
Q  1 gtaattcagttgctcaatattggcagccctacctaactgacaatcaacacc 51  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  119263 gtaattcagttgctcaatattggcagcactacctaactgacaatcaacacc 119213  T

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Target: scaffold0213 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 207
Target Start/End: Complemental strand, 23443 - 23265
Alignment:
Q  29 ctacctaactgacaatcaacacctatatgaccggttataccacagacttcacaaggaggggatgcagaagaaggtgcgacagcattagcattaagttttt 128  Q
    ||||||| ||| ||||||||||| ||||| ||   || |||||| | |||||||||||  ||| ||  ||  |||| |||||||||| |||| | |||||    
T  23443 ctacctagctggcaatcaacaccaatatgtccaaatacaccacaaatttcacaaggagatgatacaagagttggtgtgacagcattaacattcatttttt 23344  T
Q  129 caaatttttgggttaatgcctcgaccttagcagcaaggtggttatattcagagacttcgtatatacctgcctctttttt 207  Q
    |||| |||||||| | ||| || |||||||||||||| || | |     |||||||||||| |||||||||||||||||    
T  23343 caaacttttgggtgagtgcgtcaaccttagcagcaagatgatcaagggtagagacttcgtacatacctgcctctttttt 23265  T

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Target: scaffold0506 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0506
Description:

Target: scaffold0506; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 6439 - 6491
Alignment:
Q  30 tacctaactgacaatcaacacctatatgaccggttataccacagacttcacaa 82  Q
    |||||||||||||||||||||| ||||||||   ||||||||| | |||||||    
T  6439 tacctaactgacaatcaacaccaatatgaccaaatataccacatatttcacaa 6491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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