View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10145A_low_645 (Length: 227)
Name: NF10145A_low_645
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_645 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 13219522 - 13219746
Alignment:
| Q |
1 |
gcacaagactttactactcaagctgcgttatatactcatcatcaatacattgcaggctttattatgacaggggcttttgctcatggagcgatatttttta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13219522 |
gcacaagactttactactcaagctgcgttatatactcatcatcaatacattgcaggatttattatgacaggggcttttgctcatggagcgatatttttta |
13219621 |
T |
|
| Q |
101 |
ttcgcgattataatcccgaacagaatgaggataatgtattggcaagaatgttagagcacaaagaagctatcatatcccatttaagttgggccagcctatt |
200 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13219622 |
ttcgggattacaatcccgaacagaatgaggataatgtattggcaagaatgttagagcacaaagaagctatcatatcccatttaagttgggccagcctatt |
13219721 |
T |
|
| Q |
201 |
tctggggttccatactttgggactt |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
13219722 |
tctggggttccatactttgggactt |
13219746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 47842098 - 47842150
Alignment:
| Q |
4 |
caagactttactactcaagctgcgttatatactcatcatcaatacattgcagg |
56 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
47842098 |
caagactttactactcaaactgcgttatatactcatcatcaatacattgcagg |
47842150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 47842176 - 47842226
Alignment:
| Q |
1 |
gcacaagactttactactcaagctgcgttatatactcatcatcaatacatt |
51 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47842176 |
gcacaggattttactactcaagctgcgttatatactcatcatcaatacatt |
47842226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 132
Target Start/End: Original strand, 47842228 - 47842288
Alignment:
| Q |
72 |
ggcttttgctcatggagcgatattttttattcgcgattataatcccgaacagaatgaggat |
132 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||| |||| ||||||||| ||||||||||| |
|
|
| T |
47842228 |
ggcttttgcttatggagcgatattctttattcgagattgcaatcccgaatagaatgaggat |
47842288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 4 - 225
Target Start/End: Original strand, 10996438 - 10996656
Alignment:
| Q |
4 |
caagactttactactcaagctgcgttatatactcatcatcaatacattgcaggctttattatgacaggggcttttgctcatggagcgatattttttattc |
103 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||| ||||||||| |||||||||||| | ||||||||||||||| |||||||||| ||| |
|
|
| T |
10996438 |
caagactttacagctcaagctgcggtatatactcatcatcaattcattgcaggatttattatgacatgagcttttgctcatggaacgatattttt-attt |
10996536 |
T |
|
| Q |
104 |
gcgattataatcccgaacagaatgaggataatgtattggcaagaatgttagagcacaaagaagctatcatatcccatttaagttgggccagcctatttct |
203 |
Q |
| |
|
| ||||| ||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
10996537 |
gagattacaatcccgaacataatgagaataatgtattggcag--atgttagagcacaaagaagctatcatatcccatttaagttgagccatcctatttct |
10996634 |
T |
|
| Q |
204 |
ggggttccatactttgggactt |
225 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
10996635 |
agggttccatactttgggactt |
10996656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 3065837 - 3065875
Alignment:
| Q |
15 |
tactcaagctgcgttatatactcatcatcaatacattgc |
53 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
3065837 |
tactcaagctgccttatatagtcatcatcaatacattgc |
3065875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 238187 - 237967
Alignment:
| Q |
1 |
gcacaagactttactactcaagctgcgttatatactcatcatcaatacattgcaggctttattatgacaggggcttttgctcatggagcgatatttttta |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| ||||| ||||| || || || |||||||||||||||||||||||||| || ||||| | |
|
|
| T |
238187 |
gcacaagactttactactcaagctgctttatatactcatcaccaatatattgcggggttcatcatgacaggggcttttgctcatggagctatttttttca |
238088 |
T |
|
| Q |
101 |
ttcgcgattataatcccgaacagaatgaggataatgtattggcaagaatgttagagcacaaagaagctatcatatcccatttaagttgggccagcctatt |
200 |
Q |
| |
|
|| | ||||| ||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||| ||||| || |
|
|
| T |
238087 |
ttagggattacaatccggaacagaatgaggataatgtattggcaagaatgttagaccataaagaagctatcatatctcatttaagttgggctagcctctt |
237988 |
T |
|
| Q |
201 |
tctggggttccatactttggg |
221 |
Q |
| |
|
||| || |||||||| ||||| |
|
|
| T |
237987 |
tctaggattccataccttggg |
237967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 18013484 - 18013446
Alignment:
| Q |
15 |
tactcaagctgcgttatatactcatcatcaatacattgc |
53 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
18013484 |
tactcaagctgccttatatagtcatcatcaatacattgc |
18013446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University