View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_649 (Length: 226)

Name: NF10145A_low_649
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_649
NF10145A_low_649
[»] chr4 (7 HSPs)
chr4 (25-226)||(49158918-49159124)
chr4 (24-86)||(14043948-14044010)
chr4 (32-88)||(17115920-17115976)
chr4 (33-85)||(18862402-18862454)
chr4 (30-83)||(43148556-43148609)
chr4 (30-88)||(542284-542341)
chr4 (30-86)||(4787072-4787128)
[»] chr7 (7 HSPs)
chr7 (25-88)||(1295576-1295639)
chr7 (16-89)||(16984321-16984393)
chr7 (30-86)||(2847151-2847207)
chr7 (56-90)||(145674-145708)
chr7 (52-85)||(28065608-28065641)
chr7 (27-84)||(37586524-37586581)
chr7 (55-87)||(11827916-11827948)
[»] chr2 (5 HSPs)
chr2 (25-86)||(34608775-34608836)
chr2 (31-86)||(25770409-25770464)
chr2 (30-86)||(25780903-25780959)
chr2 (30-86)||(26170176-26170232)
chr2 (30-86)||(41101147-41101203)
[»] chr8 (3 HSPs)
chr8 (30-89)||(15892033-15892092)
chr8 (30-86)||(32158709-32158765)
chr8 (51-87)||(32035747-32035783)
[»] chr1 (3 HSPs)
chr1 (25-86)||(5270142-5270203)
chr1 (33-87)||(2093635-2093689)
chr1 (45-86)||(47542948-47542989)
[»] chr6 (6 HSPs)
chr6 (31-87)||(24359195-24359251)
chr6 (29-77)||(3442804-3442851)
chr6 (33-86)||(2038318-2038371)
chr6 (30-78)||(10378723-10378771)
chr6 (40-88)||(14469142-14469190)
chr6 (55-87)||(35018821-35018853)
[»] chr5 (2 HSPs)
chr5 (33-87)||(22858539-22858593)
chr5 (57-89)||(2598536-2598568)
[»] chr3 (1 HSPs)
chr3 (30-86)||(44893611-44893667)


Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 25 - 226
Target Start/End: Complemental strand, 49159124 - 49158918
Alignment:
Q  25 agggatatttttggaatttcagtttggaatgagcaaaatgtgttgggtaaagagcagaattctttgaacaatatttaaaggaaa-----ttgtgcagttt 119  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||    
T  49159124 aggggtatttttggaattttagtttggaatgagcaaaatgtgttgggtaaagagcagaattctttgaacaatatttaaaggaaaggaaattgtgcagttt 49159025  T
Q  120 tgtgtcattttcacaagtcagaaacttggtctccacttcaatttctcttcttcatcgctaccagttactgccaaggttccattttttctctattcatttt 219  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49159024 tctgtcattttcacaagtcagaaacttggtctccacttcaatttctcttcttcatcgctaccagttactgccaaggttccattttttctctattcatttt 49158925  T
Q  220 cactcta 226  Q
    |||||||    
T  49158924 cactcta 49158918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 14044010 - 14043948
Alignment:
Q  24 tagggatatttttggaatttcagtttggaatgagcaaaatgtgttgggtaaagagcagaattc 86  Q
    |||||| ||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  14044010 tagggacattttaggaatttcagttgggaatgagcaaaatgtgtttggtaaagagcagaattc 14043948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 17115920 - 17115976
Alignment:
Q  32 tttttggaatttcagtttggaatgagcaaaatgtgttgggtaaagagcagaattctt 88  Q
    ||||| |||||||||||  |||||||||||||||||| |||||||||||||||||||    
T  17115920 ttttttgaatttcagttgagaatgagcaaaatgtgttaggtaaagagcagaattctt 17115976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 18862402 - 18862454
Alignment:
Q  33 ttttggaatttcagtttggaatgagcaaaatgtgttgggtaaagagcagaatt 85  Q
    ||||| |||||||||| ||||||||||||||||||| ||| ||||||||||||    
T  18862402 ttttgaaatttcagttgggaatgagcaaaatgtgttaggttaagagcagaatt 18862454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 43148609 - 43148556
Alignment:
Q  30 tatttttggaatttcagtttggaatgagcaaaatgtgttgggtaaagagcagaa 83  Q
    |||||||  ||||| |||| |||||||||||||||| |||||||||||||||||    
T  43148609 tatttttaaaattttagttgggaatgagcaaaatgtattgggtaaagagcagaa 43148556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 542341 - 542284
Alignment:
Q  30 tatttttggaatttcagtttggaatgagcaaaatgtgttgggtaaagagcagaattctt 88  Q
    |||||||||||||||||||  ||| ||||||||| |||||||||| ||||| |||||||    
T  542341 tatttttggaatttcagttgagaa-gagcaaaatatgttgggtaatgagcaaaattctt 542284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 4787128 - 4787072
Alignment:
Q  30 tatttttggaatttcagtttggaatgagcaaaatgtgttgggtaaagagcagaattc 86  Q
    |||||||| |||| || ||  ||||||||||||| |||| |||||||||||||||||    
T  4787128 tatttttgaaattgcacttgagaatgagcaaaatatgttcggtaaagagcagaattc 4787072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 1295576 - 1295639
Alignment:
Q  25 agggatatttttggaatttcagtttggaatgagcaaaatgtgttgggtaaagagcagaattctt 88  Q
    |||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  1295576 aggggtatttttgaaatttcagttaggaatgagcaaaatgtgttgggtaaagagcagaattctt 1295639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 16984393 - 16984321
Alignment:
Q  16 aactcagatagggatatttttggaatttcagtttggaatgagcaaaatgtgttgggtaaagagcagaattcttt 89  Q
    |||||| | ||||||| ||||||||||| |||| |||||||||||||||||||||||  |||||||||||||||    
T  16984393 aactcacacagggataattttggaattttagttgggaatgagcaaaatgtgttgggt-tagagcagaattcttt 16984321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 2847207 - 2847151
Alignment:
Q  30 tatttttggaatttcagtttggaatgagcaaaatgtgttgggtaaagagcagaattc 86  Q
    ||||||| ||||||||||| |||||||||||||  |||| |||||||||||||||||    
T  2847207 tatttttagaatttcagttgggaatgagcaaaacatgttaggtaaagagcagaattc 2847151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 90
Target Start/End: Complemental strand, 145708 - 145674
Alignment:
Q  56 agcaaaatgtgttgggtaaagagcagaattctttg 90  Q
    ||||||| |||||||||||||||||||||||||||    
T  145708 agcaaaaagtgttgggtaaagagcagaattctttg 145674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 85
Target Start/End: Complemental strand, 28065641 - 28065608
Alignment:
Q  52 aatgagcaaaatgtgttgggtaaagagcagaatt 85  Q
    |||||| |||||||||||||||||||||||||||    
T  28065641 aatgagtaaaatgtgttgggtaaagagcagaatt 28065608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 37586524 - 37586581
Alignment:
Q  27 ggatatttttggaatttcagtttggaatgagcaaaatgtgttgggtaaagagcagaat 84  Q
    |||||||||||||||||||||| |||  ||||||  | |||||| |||||||||||||    
T  37586524 ggatatttttggaatttcagttgggagcgagcaatttctgttggataaagagcagaat 37586581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 87
Target Start/End: Original strand, 11827916 - 11827948
Alignment:
Q  55 gagcaaaatgtgttgggtaaagagcagaattct 87  Q
    |||||||| ||||||||||||||||||||||||    
T  11827916 gagcaaaaagtgttgggtaaagagcagaattct 11827948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 34608775 - 34608836
Alignment:
Q  25 agggatatttttggaatttcagtttggaatgagcaaaatgtgttgggtaaagagcagaattc 86  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||    
T  34608775 agggatatttttggaatttcagttgggaataagcaaaatgtgttgggtaaagagcaaaattc 34608836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 31 - 86
Target Start/End: Original strand, 25770409 - 25770464
Alignment:
Q  31 atttttggaatttcagtttggaatgagcaaaatgtgttgggtaaagagcagaattc 86  Q
    |||||| |||||||||||   |||||||||||||||||||||||||||||||||||    
T  25770409 atttttagaatttcagttgaaaatgagcaaaatgtgttgggtaaagagcagaattc 25770464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 25780903 - 25780959
Alignment:
Q  30 tatttttggaatttcagtttggaatgagcaaaatgtgttgggtaaagagcagaattc 86  Q
    |||||||| |||||||||| | |||||||||||||||||||||||| |||| |||||    
T  25780903 tatttttgaaatttcagttggaaatgagcaaaatgtgttgggtaaatagcacaattc 25780959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 26170232 - 26170176
Alignment:
Q  30 tatttttggaatttcagtttggaatgagcaaaatgtgttgggtaaagagcagaattc 86  Q
    ||||||||||||||||||| ||   ||||||| ||||||| ||||||||||||||||    
T  26170232 tatttttggaatttcagttgggcgcgagcaaattgtgttgagtaaagagcagaattc 26170176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 41101203 - 41101147
Alignment:
Q  30 tatttttggaatttcagtttggaatgagcaaaatgtgttgggtaaagagcagaattc 86  Q
    ||||||| |||||||| || | || ||||||||||||||||||||| |||| |||||    
T  41101203 tatttttagaatttcaattggaaacgagcaaaatgtgttgggtaaatagcataattc 41101147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 15892092 - 15892033
Alignment:
Q  30 tatttttggaatttcagtttggaatgagcaaaatgtgttgggtaaagagcagaattcttt 89  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||| || ||||||||    
T  15892092 tatttttggaatttcagttgggaatgagcataatgtgttgggtaaagaacataattcttt 15892033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 32158709 - 32158765
Alignment:
Q  30 tatttttggaatttcagtttggaatgagcaaaatgtgttgggtaaagagcagaattc 86  Q
    ||||||||||||||| ||| | |||||||||||||||||||||||||||| ||||||    
T  32158709 tatttttggaatttcggttggcaatgagcaaaatgtgttgggtaaagagcggaattc 32158765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 32035783 - 32035747
Alignment:
Q  51 gaatgagcaaaatgtgttgggtaaagagcagaattct 87  Q
    ||||||||||||| |||||| ||||||||||||||||    
T  32035783 gaatgagcaaaatatgttggataaagagcagaattct 32035747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 5270142 - 5270203
Alignment:
Q  25 agggatatttttggaatttcagtttggaatgagcaaaatgtgttgggtaaagagcagaattc 86  Q
    |||| ||||||||||||||||||| | ||||| ||||||||||||||||||||||| |||||    
T  5270142 aggggtatttttggaatttcagttggaaatgaacaaaatgtgttgggtaaagagcaaaattc 5270203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 87
Target Start/End: Original strand, 2093635 - 2093689
Alignment:
Q  33 ttttggaatttcagtttggaatgagcaaaatgtgttgggtaaagagcagaattct 87  Q
    |||||||| ||||||| |||||||  ||| |||||||||||||||||||||||||    
T  2093635 ttttggaacttcagttgggaatgattaaattgtgttgggtaaagagcagaattct 2093689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 47542989 - 47542948
Alignment:
Q  45 agtttggaatgagcaaaatgtgttgggtaaagagcagaattc 86  Q
    |||| |||||||||||||||||||||| ||||||||||||||    
T  47542989 agttgggaatgagcaaaatgtgttggggaaagagcagaattc 47542948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 24359195 - 24359251
Alignment:
Q  31 atttttggaatttcagtttggaatgagcaaaatgtgttgggtaaagagcagaattct 87  Q
    ||||||||||||||||||   |||||| |||||||||||||||||||||||||||||    
T  24359195 atttttggaatttcagttgaaaatgagaaaaatgtgttgggtaaagagcagaattct 24359251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 3442804 - 3442851
Alignment:
Q  29 atatttttggaatttcagtttggaatgagcaaaatgtgttgggtaaaga 77  Q
    |||||||| ||||||||||| ||||||||| ||||||||||||||||||    
T  3442804 atatttttagaatttcagtt-ggaatgagcgaaatgtgttgggtaaaga 3442851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 2038371 - 2038318
Alignment:
Q  33 ttttggaatttcagtttggaatgagcaaaatgtgttgggtaaagagcagaattc 86  Q
    ||||||||||||||||  |||| || ||||| |||| |||||||||||||||||    
T  2038371 ttttggaatttcagttgagaattagtaaaatatgtttggtaaagagcagaattc 2038318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 10378771 - 10378723
Alignment:
Q  30 tatttttggaatttcagtttggaatgagcaaaatgtgttgggtaaagag 78  Q
    |||||||| ||||||| ||  |||||||||||||||||||| |||||||    
T  10378771 tatttttgaaatttcaattgtgaatgagcaaaatgtgttggataaagag 10378723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 14469190 - 14469142
Alignment:
Q  40 atttcagtttggaatgagcaaaatgtgttgggtaaagagcagaattctt 88  Q
    ||||||||| | |||||||||||  |||| |||||||||||||||||||    
T  14469190 atttcagttggaaatgagcaaaaactgttaggtaaagagcagaattctt 14469142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 87
Target Start/End: Original strand, 35018821 - 35018853
Alignment:
Q  55 gagcaaaatgtgttgggtaaagagcagaattct 87  Q
    |||||||||||||||||| ||||||||||||||    
T  35018821 gagcaaaatgtgttgggtgaagagcagaattct 35018853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 87
Target Start/End: Original strand, 22858539 - 22858593
Alignment:
Q  33 ttttggaatttcagtttggaatgagcaaaatgtgttgggtaaagagcagaattct 87  Q
    |||||| ||||||||| ||||||| ||||| ||||||||||||||||| ||||||    
T  22858539 ttttgggatttcagttgggaatgaacaaaacgtgttgggtaaagagcataattct 22858593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 89
Target Start/End: Complemental strand, 2598568 - 2598536
Alignment:
Q  57 gcaaaatgtgttgggtaaagagcagaattcttt 89  Q
    |||||||||||||||||||||||||||||||||    
T  2598568 gcaaaatgtgttgggtaaagagcagaattcttt 2598536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 44893611 - 44893667
Alignment:
Q  30 tatttttggaatttcagtttggaatgagcaaaatgtgttgggtaaagagcagaattc 86  Q
    |||||||| |||||||||| |||||||||||||| | ||  ||||||||||||||||    
T  44893611 tatttttgaaatttcagttgggaatgagcaaaatatattatgtaaagagcagaattc 44893667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University