View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_65 (Length: 405)
Name: NF10145A_low_65
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_65 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 16 - 403
Target Start/End: Original strand, 30007153 - 30007523
Alignment:
| Q |
16 |
tggacatcagaagaggacagaatattggtgaatcacattaagaaacatggccatggaagttggagagcacttccaaagctagcaggattgaacagatgtg |
115 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30007153 |
tggacaccagaagaggacagaatattggtgaatcacattaagaaacatggccatggaagttggagagcacttccaaagctagcaggattgaacagatgtg |
30007252 |
T |
|
| Q |
116 |
ggaaaagttgcagactaaggaggactaactatttaagacctgatatcaaaagaggacaattcccagatgaagaagagaaaacaatcatcaatttgcatgc |
215 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
30007253 |
ggaaaagttgcagactaaggtggactaactatttaagacctgatatcaaaagaggacaattcacagatgaagaagagaaaacaatcatcaatttgcatgc |
30007352 |
T |
|
| Q |
216 |
tgttcttgggaataagtaagtcattaattcatctcctaatttaatattaatattcattcattttcactacttctaaaaatactacatgtatacttggatg |
315 |
Q |
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| T |
30007353 |
tgttcttgggaataagtaagtca-----------------ttaatattaatattcattcattttcactacttctaaaaatactacatgtatacttggatg |
30007435 |
T |
|
| Q |
316 |
gtggtgagtttggcaaaaccgcgatgaccctgattttgttgaagctctgaagtgtaacttttgacaaaatcgcaaagttcaccgtgat |
403 |
Q |
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| T |
30007436 |
atggtgagtttggcaaaaccgcgatgaccctgattttgttgaagctctgaagtgtaacttttgacaaaatcgcagagttcaccgtgat |
30007523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 388
Target Start/End: Complemental strand, 19413408 - 19413368
Alignment:
| Q |
348 |
attttgttgaagctctgaagtgtaacttttgacaaaatcgc |
388 |
Q |
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| T |
19413408 |
attttgttgaagctccaaagtgtaacttttgtcaaaatcgc |
19413368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 5e-38; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 23 - 235
Target Start/End: Complemental strand, 1319471 - 1319259
Alignment:
| Q |
23 |
cagaagaggacagaatattggtgaatcacattaagaaacatggccatggaagttggagagcacttccaaagctagcaggattgaacagatgtgggaaaag |
122 |
Q |
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||||||| || | |||||| ||| |||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||| || || |
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| T |
1319471 |
cagaagaagataaaatattagtggatcacattcagaaacatggccatggaagttggagagctcttccaaagcttgcaggattgaatagatgtggaaagag |
1319372 |
T |
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| Q |
123 |
ttgcagactaaggaggactaactatttaagacctgatatcaaaagaggacaattcccagatgaagaagagaaaacaatcatcaatttgcatgctgttctt |
222 |
Q |
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||| ||||| || ||| ||| ||| |||| |||||||| | ||||||| ||||| | ||||||||||| || ||||||||||| ||| | |||||| |
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| T |
1319371 |
ttgtagacttagatggaataattatctaaggcctgatattagaagaggaaaattctctgatgaagaagaaaatctcatcatcaatttacattcagttctt |
1319272 |
T |
|
| Q |
223 |
gggaataagtaag |
235 |
Q |
| |
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|| |||||||||| |
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| T |
1319271 |
ggaaataagtaag |
1319259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 22 - 235
Target Start/End: Original strand, 1281246 - 1281459
Alignment:
| Q |
22 |
tcagaagaggacagaatattggtgaatcacattaagaaacatggccatggaagttggagagcacttccaaagctagcaggattgaacagatgtgggaaaa |
121 |
Q |
| |
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||||||||||| | || ||| ||| |||||||| |||||||||| | |||| ||||||||| ||||||| || |||||||| ||||||||||| || | |
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| T |
1281246 |
tcagaagaggataaaaaattagtggatcacattcagaaacatggtcctggacgttggagagatcttccaaggcgtgcaggattaaacagatgtggaaaga |
1281345 |
T |
|
| Q |
122 |
gttgcagactaaggaggactaactatttaagacctgatatcaaaagaggacaattcccagatgaagaagagaaaacaatcatcaatttgcatgctgttct |
221 |
Q |
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|||| || |||| |||| || |||||||| |||||||| |||||||| |||| | |||||||||||| || ||||||||||| ||| | ||||| |
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| T |
1281346 |
gttgtaggttaagatggacaaattatttaagtcctgatattaaaagagggaaattttctgatgaagaagaggaactcatcatcaatttacattcagttct |
1281445 |
T |
|
| Q |
222 |
tgggaataagtaag |
235 |
Q |
| |
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||| |||||||||| |
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| T |
1281446 |
tggaaataagtaag |
1281459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 58 - 191
Target Start/End: Original strand, 12551924 - 12552057
Alignment:
| Q |
58 |
aaacatggccatggaagttggagagcacttccaaagctagcaggattgaacagatgtgggaaaagttgcagactaaggaggactaactatttaagacctg |
157 |
Q |
| |
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|||||||||||||||| |||| || ||||| |||| | || || ||||| || |||||||| ||||| || ||||| |||| || ||||| || |||| |
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| T |
12551924 |
aaacatggccatggaaattggggaacactttcaaaacgtgctggtttgaataggtgtgggaagagttgtaggttaaggtggacaaattatttgaggcctg |
12552023 |
T |
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| Q |
158 |
atatcaaaagaggacaattcccagatgaagaaga |
191 |
Q |
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||||||| ||||| ||||| | ||||||||||| |
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| T |
12552024 |
atatcaagagagggaaattcactgatgaagaaga |
12552057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 386
Target Start/End: Complemental strand, 6507919 - 6507879
Alignment:
| Q |
346 |
tgattttgttgaagctctgaagtgtaacttttgacaaaatc |
386 |
Q |
| |
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|||||||||||||||||||||||||| |||| |||||||| |
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| T |
6507919 |
tgattttgttgaagctctgaagtgtagtttttaacaaaatc |
6507879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 33695180 - 33695229
Alignment:
| Q |
49 |
cacattaagaaacatggccatggaagttggagagcacttccaaagctagc |
98 |
Q |
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| T |
33695180 |
cacattcagcaacatggccatggaagttggagagcactccctaagctagc |
33695229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 390
Target Start/End: Original strand, 23186895 - 23186939
Alignment:
| Q |
346 |
tgattttgttgaagctctgaagtgtaacttttgacaaaatcgcaa |
390 |
Q |
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|||||||||||||||||| |||||||||||||| |||||| |||| |
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| T |
23186895 |
tgattttgttgaagctctaaagtgtaacttttggcaaaattgcaa |
23186939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 386
Target Start/End: Original strand, 30007497 - 30007537
Alignment:
| Q |
346 |
tgattttgttgaagctctgaagtgtaacttttgacaaaatc |
386 |
Q |
| |
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||||||||||||||||| |||||||||||||| ||||||| |
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| T |
30007497 |
tgattttgttgaagctcgaaagtgtaacttttgtcaaaatc |
30007537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 192
Target Start/End: Complemental strand, 33732264 - 33732184
Alignment:
| Q |
112 |
tgtgggaaaagttgcagactaaggaggactaactatttaagacctgatatcaaaagaggacaattcccagatgaagaagag |
192 |
Q |
| |
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||||| ||||| |||||||| ||| ||| ||||||||| ||||| ||||| || |||||| | ||| || ||||||||||| |
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| T |
33732264 |
tgtggaaaaagctgcagacttaggtggattaactatttgagaccagatattaagagaggaaatttcacaaatgaagaagag |
33732184 |
T |
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