View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_650 (Length: 226)
Name: NF10145A_low_650
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_650 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 43239055 - 43238834
Alignment:
| Q |
1 |
aaaagttaaaacataatttaactgagaata-gagtaatatacctttgtcaatagtatgagcagtggaaagatcataagaatcatttgagatattcttgtc |
99 |
Q |
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|||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
43239055 |
aaaagttaaaacataatttagctgagaataagagtaatatacctttgtcaatagtatgagcagtggaaaggtcataagaatcatttgagatattcttgtc |
43238956 |
T |
|
| Q |
100 |
ttcttgaccatgttctaggttgagagtgagagagttatcattgcttgctctaccttcaacctccatggtgaatatgttaactcattccaatttccaaaaa |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43238955 |
ttcttgaccatgttctaggttgagagtgagagagttatcattgcttgctctaccttcaacctccatggtgaatatgttaactcattccaatttccaaaaa |
43238856 |
T |
|
| Q |
200 |
cgcaaga-tttggtacacatat |
220 |
Q |
| |
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||||||| |||||||||||||| |
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| T |
43238855 |
cgcaagagtttggtacacatat |
43238834 |
T |
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