View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_654 (Length: 226)
Name: NF10145A_low_654
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_654 |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 22467105 - 22466951
Alignment:
| Q |
1 |
ttagttgtaactattttgcttaagtttagggaagttagttatgattgaatgatataaggatcacaatagtttataatcatccttcactgaattgctataa |
100 |
Q |
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| T |
22467105 |
ttagttgtaactattttgcttaagtttaagtgagttagttatgattgaatgatgtaaggatcacaatagtttataatcatccttcactgaattgctataa |
22467006 |
T |
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| Q |
101 |
atatatgtaattgcttttattgcaagttaaaatgaaataatggttcattgaacta |
155 |
Q |
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| T |
22467005 |
atacatgtaattgcttttattgcaagttaaaatgaaataatggttcattgaacta |
22466951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 150
Target Start/End: Complemental strand, 4537942 - 4537795
Alignment:
| Q |
4 |
gttgtaactattttgcttaagtttagggaagttagttatgattgaatgatataaggatcacaatagtttataatcatccttcactgaattgctataaata |
103 |
Q |
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| T |
4537942 |
gttgtgactacttttcttaagtttaggaaagttagttatgattgagtgaggcgaagatcacggtagtttatgccgatctatcactgaaatacaataaata |
4537843 |
T |
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| Q |
104 |
tatgtaattgcttttattgcaagttaaaatg-aaataatggttcattg |
150 |
Q |
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| T |
4537842 |
cttgtaattacttctattgcaagttacgatgaaaataatggttcattg |
4537795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 155
Target Start/End: Complemental strand, 27908678 - 27908549
Alignment:
| Q |
25 |
tttagggaagttagttatgattgaatgatataaggatcacaatagtttataatcatccttcactgaattgctataaatatatgtaattgcttttattgca |
124 |
Q |
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| T |
27908678 |
tttagggaagttagttatgatagagtgaagcaaggatcacaatagtt-ataatagtccttcactgaaaagctataaatacatgtaattgcttctattgca |
27908580 |
T |
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| Q |
125 |
agttaaaatgaaataatggttcattgaacta |
155 |
Q |
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| T |
27908579 |
aattaatgtgaaaaaatggttcattgaacta |
27908549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 10 - 153
Target Start/End: Original strand, 29997619 - 29997762
Alignment:
| Q |
10 |
actattttgcttaagtttagggaagttagttatgattgaatgatataaggatcacaatagtttataatcatccttcactgaattgctataaatatatgta |
109 |
Q |
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| T |
29997619 |
actactttgctcatgtttaggaaagttagttatgatacagtgaggtgaagatcacagtagtttatgctgatctatcactgaaataccataagtacatgta |
29997718 |
T |
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| Q |
110 |
attgcttttattgcaagttaaaatgaaataatggttcattgaac |
153 |
Q |
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| T |
29997719 |
attgcttctattacaagttaatgtgaaataatggttcattgaac |
29997762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 4368904 - 4368973
Alignment:
| Q |
5 |
ttgtaactattttgcttaagtttagggaagttagttatgattgaatgatataaggatcacaatagtttat |
74 |
Q |
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| T |
4368904 |
ttgtaactactttgcttatgtttatggaagttagttatgattgagtgagatgaagatcacaatagcttat |
4368973 |
T |
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